Pistacia vera (pistachio): 116117266
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Entry
116117266 CDS
T07386
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116117266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116117266
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116117266
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116117266
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
NOT1_connector
CNOT1_HEAT
ARM_TANGO6
Motif
Other DBs
NCBI-GeneID:
116117266
NCBI-ProteinID:
XP_031259158
LinkDB
All DBs
Position
Unknown
AA seq
2604 aa
AA seq
DB search
MVTFSLLVSDQIRFLLESLNDSNFDVVLNELLHFVEYGTEGSILLLRTCLDHVNFDREDI
QKLQLRPDILAAIFRYLLDQPNFGTVFAESLGSMVISEKFLGGLCDALHLSVFEKIALGL
ALADINNAEMRTIRQNFSMGQIEELCGNPASIGSAEKIQNIIIFLYRSEGLAKHVDSFMQ
MLSLMDPKERTPLILAPLLSSNLQEARSLGNLDTFYGCSESEFDAILAEMESETSMADIM
RELGYGCTFNSSHCKEVLSLFSPLTEVTLSRILSTIARTFVGLEENQNSYSTFCSAIGST
ASSDLNGFSSWNVDVLVNSIKELAPRTNWVHVMEHLDHEGFFIPNNSAFSFFMSTYAHAC
QDPFPLHAVCGSVWKNADGQLSFLRYAVSAPPEIFTFDHSVKKLAYNEVLYGYEHPDGPG
NHAWLSLDLLEVLCQLAERGHMGSVRAMLEYPLKHTPGILLLGIAQINTAYSLLQCEVVS
TVFPLIVASSMKSVILHLWHSNPKLVTCGFIDMIRIDQGNMLKIVDICQELKILQLLLEQ
SPFSFGIRLAVLASQKEYINLETWLNDNLTVYKDIFLAECLKFLKEMTFDAADDVSANLF
EHSGAVVNLQTETNLTILKVLQDNSKQFASDHLAEELKRMQETSLHVGPRLQNVGASDAS
ASEGYADDIEDEVNSYFQKIFSGQVPVDTIVQMLARFKESYEQREQLIFRCMIHNLFEEY
SFFLQYPEKQLKIAAVLFGSLIKHRLVTHLELGIALRGVLDALRKPIDSKIFSFGTKALE
QFLDCLVELPQYCNHILQISHLRGTHPELVALVERALARASSGYSELNRANGGPTDPHNG
SPATLENVEVPDSSQLLGSRNTQPGQQISSPIQMQQGYQLFLRDRHKESTTSNSYAKPLL
SLSTHPSVISSDTASYQNSSQILSSQNTASVQAALSSSSSFLHSSRGITSTRFGSALNIE
TLIVAAERRDTAIKAPASEVQDKILFMINNISTLNIDAKAKDFTEILSEQYYSWFAQYMV
MKRASIEPNFHDLYLKFLDKVNSKALNKEIVKAAYENCKVLLRSELIKSSSEERSLLKNL
GSWLGKFTIGRNQVLRASEIDPKSLIIEAYQKGLMIAVIPFTSKILEPCQSSLAYQPPNP
WTMAILGLLTEIYLMPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDCVRAVEGNPDFS
NKDIGASQPQVVTEVNSGIIPTLNLVDLNPEIVNSSHPGGRLKVIPQYVGGLHLASGPLV
EDEKIAGLGLPDRLPSAQVAPSQQPYSVGQLPSPIHNIGNHIILNQKLSALGLHYFQRVV
PSAMELAIKEVMLPIVQRSVAIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLA
HVTCKEPLRISISNQLRSSFQGSNISNELLEQAVPLVMNDNLDLGCAVIEQAATEKALQT
IDADITAQLSLRRKHREGIGPSFYNASVYTQRHLGVIPEALRPRPGHLSHSQQRVYEDFV
RFPWQNQSGQSSNTVLSGPHTPSGVSVSSGLSRTYVSSAGQLNPGFYSAGLGTIGLSAVT
QPSDVEEMEPSSAQFLSGSSTRIGAIDGVIPHGSKINSVASFSQLPLHLKCSVGTFNAAK
VRNCHINILSFHLISALGFLKGIGNFSRHTYDSTSGHLGSGTLESSSSVADVLEKYQIVA
QKLETLVTKDSGETEIRGVIAQIPELILKYVNRDEVALAVAQKVFNSLYENVSNSIHVAA
HLSILVAIRDVCKNVMKHLTSWVIYSKEERKFNTNVTVGLIRKDLLDLDEYDKHMGKLID
AGRNKAATEFAINLLQTLLVQESRVHLSELPGLVDALAKLALRAGSPESLQQLVEIAKNP
AANEEILSGVTVGKEDRTKQTSEIMVSDSSMTSREGYINAESVGLDPAGFHDQVIYSKEE
RKFNTNVTVGLIRKDLLDLDEYDKHMGKLIDAGRNKAATEFAINLLQTLLVQESRVHLSE
LPGLVDALAKLALRAGSPESLQQLVEIAKNPAANEEILSGVTVGKEDRTKQTSEIMVSDS
SMTSREGYINAESVGLDPAGFHDQVSAVFKEWSQIYGLHGANDDVCMQFIAQLHQNGYLD
GDGMSDRFFRILTEFSVEDCLPSEQNSSSTWLIQSAQATQNLSFVPIDAYAKLVSFILRY
CIMEHGPSKLLLWPKILSVTVRIVQRDAEVKKGSFNPRPYFRLLINWLFDLVSQDPASDI
ANFQVLIIFANAFHALQPLKVPAFSFAWLELVSHCSFMPKLLTINVPKGWIYVQCLLVDL
FRFMEPYLRNAELGEPIHSLYKGTLRVLLVLLHDFPEFLGDNHFSFCDVIPSSCIQMRNV
ILSAFPRNMRLPDPSTPNLKIDLLPEMHRSPHIFSEVDAALKAKQMKSDVDEYLKTRHQG
SPFLSELKQGLLLSQNEAAQAGTRYNVPLINSLVLYVGMQTIEQLQTKTPPPLSQPITHN
GPMELYLMGPALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNNHTHLFSFVLLYLFNEAS
QEIIQEQITRVLFERLIVNRPHPWGLLTTFIELIKNPRYNFWNRGFTRCAPEIEKLFESV
SRSCGGPKPVDESIVSGVIADNMH
NT seq
7815 nt
NT seq
+upstream
nt +downstream
nt
atggtgactttctcattgctcgtgtcggaccagattcggttccttcttgaaagcctcaac
gactccaatttcgacgtcgttttgaacgaactcttgcattttgttgaatatggaactgag
ggaagcattttgctgctacggacttgcctggatcatgtgaattttgacagagaagacatc
cagaaactgcagctgaggccagatattttagctgcaatatttagatatctattagatcaa
ccaaattttggtactgtgtttgctgaatcattgggaagcatggtgatcagcgaaaagttc
cttggaggcttatgtgatgcattacacttatcagtctttgagaaaattgcccttggtctt
gctttagcagatataaacaacgctgagatgagaacaatcaggcaaaactttagcatgggt
cagatagaagagttatgtggaaatcctgcttctattggttctgctgagaaaattcagaat
attattattttcttgtacagatcagagggccttgccaagcatgttgactcctttatgcaa
atgttgtctctgatggatccaaaagagaggacgccattgatattggctccattgctttca
agtaatttacaggaggctaggtctctaggaaatttggacacattttatggttgcagcgaa
agtgaatttgatgccattttagcagagatggagagtgaaactagcatggctgacattatg
agagaactaggttatggatgcacatttaattcttcgcattgcaaggaggtgttgtcactt
ttttcacctctgacagaagtcactctctctagaatacttagcacaattgcccgcactttt
gttgggcttgaggaaaatcaaaattcctattcgacattttgctctgctattggcagcact
gcctcatctgatttaaatggcttcagctcttggaatgttgacgttctcgttaactcgatt
aaggaacttgctccaagaactaattgggtacatgttatggaacatttggatcatgagggt
tttttcatccccaataacagcgctttttcttttttcatgtccacttatgctcatgcatgt
caggatccttttcctctgcatgctgtttgtgggtctgtttggaagaatgctgatggccag
ttatcttttctcagatatgctgtatcagccccacccgaaatattcacctttgatcattct
gtcaagaaactagcatataatgaggtactttatggttatgagcatccagatggacccgga
aatcatgcatggttatctcttgatcttttggaggtgttatgccaattagctgagaggggc
catatgggttcagtacgagcaatgctagagtatcctctcaaacacacccctggaatctta
cttcttggaattgcacaaattaatactgcttatagcctccttcagtgcgaggtggtttcc
actgtttttcccttgatagttgcaagttccatgaaaagtgtgattcttcacctttggcat
tctaaccccaagctagtgacctgtggattcatagacatgattagaattgatcaaggaaac
atgctcaaaattgtagacatctgccaagagctgaagattttacaactcctcttggagcaa
agtccgttttcatttggtattcgactggctgtccttgcttctcagaaagaatatataaat
cttgagacatggttgaatgataacttgacagtctacaaagatattttcttagcagaatgc
cttaagtttttgaaggagatgacttttgatgcagcagatgatgtatctgccaatttgttt
gaacattctggtgctgttgtgaacttacaaacagagacaaatttaactattttaaaggtc
cttcaagataattctaagcaatttgcctctgaccacctcgctgaggaattgaaaagaatg
caagagacatctttgcatgttggtcctcgactgcaaaatgttggggcttcagatgcatca
gcatctgagggatatgctgatgatatagaggatgaagtgaattcttattttcagaaaata
ttttctggtcaagtacctgttgatacgatagttcagatgctcgcacgcttcaaggagtct
tatgagcaaagggaacagttaatctttcggtgcatgatacataatttgtttgaagagtac
agtttcttcctacaatatccagaaaagcagctaaagattgcagctgttctgtttggttct
cttataaagcatcgtcttgtaacccatcttgaacttggtattgctctccgtggtgtgttg
gatgcattgcgtaaacctatagactcaaaaatattctcttttggtaccaaggctttggag
cagtttttggattgcttagttgagttgccacaatactgcaatcatattttgcaaatatct
catttgcggggtactcatcctgagcttgttgcacttgttgaacgtgctctcgctagggct
tcatccggctactcagaattaaatagagccaatggtggtcctactgatcctcacaatggt
tctccagctacgttggaaaatgtggaggtacctgattcttcgcagttattgggatctagg
aacacacagcctgggcagcaaatctcttctccaatccagatgcaacagggatatcaatta
tttcttcgtgacaggcacaaagaatctaccacttcaaatagttatgcaaaaccacttttg
tctctctctacgcacccttcggtcatttcaagtgatacagctagttatcaaaattcctca
caaattttgtcatcacaaaatacagcaagtgtccaagcagccctgtcttcatcttctagt
tttcttcattcttctaggggaattacctcaactaggtttggttctgctctgaatattgaa
acactcattgtggcagctgagagaagggatactgccatcaaggctcctgcatcagaggtt
caggataagatactatttatgatcaataatatttcaactttaaacattgatgcgaaagca
aaggattttactgagattttaagtgaacagtattattcttggtttgctcagtatatggtg
atgaaaagagcaagcattgaacccaatttccatgacttgtacttgaagtttctggacaaa
gttaattcaaaagcattgaataaagagattgttaaagctgcatatgaaaattgcaaggtt
cttttaagatcggagcttataaaatcgagttcagaagagcgctccttgttgaaaaatctg
ggtagctggcttgggaagtttactattggcagaaatcaagtacttagggcttcagaaata
gatcccaaatctttaatcatagaagcatatcagaagggactgatgattgctgtgattcct
tttacctcaaagattttggaaccatgccaaagtagtcttgcttaccagcctcccaatccg
tggaccatggcaattcttggtttactcacagagatttatttgatgccaaatctaaaaatg
aatcttaagtttgatattgaggtcctctttaagaaccttggggttgatatgaaggaagtt
aaaccaacatctcttctaaaagattgtgttagggcagtagaagggaaccctgatttttcc
aataaagatattggggcatctcagccacaagtggttacagaagtcaactctggaatcatc
cctacattgaatctggttgatctaaatcctgaaattgtcaattcatctcatcctggtggc
cgtctaaaagttataccccagtatgttggtggccttcatcttgcttctggtccattagtg
gaggatgaaaagattgctggtctaggtctacctgatcgccttccttccgctcaagtagct
ccatcgcagcaaccatattctgttggtcagctaccttcaccaattcataatattggaaat
cacattattttaaaccaaaagctcagtgctttgggcttgcactactttcagagagttgtt
ccttctgcaatggagcttgctatcaaagaggtaatgcttcccattgtccaacgcagtgtt
gccatcgctactcagacaaccaaagaacttgtactgaaggactatgctatggaatctgat
gagacccgcatatataatgctgcgcacttgatggttgctagtcttgctgggagtttggct
catgtgacatgcaaggaaccccttcgtatttcaatatcaaatcaacttaggagttcattt
cagggttcaaatatctccaatgaactcctcgagcaagctgtgcctcttgttatgaatgat
aaccttgatctgggttgtgctgtgattgaacaggctgcaactgagaaggcattgcaaacc
attgatgctgacattactgcgcaactttctttgagaaggaagcatagagagggcattggc
ccttcattttataatgcaagtgtttatacacagcgtcacctgggtgtcatacctgaggcc
ctgcgcccccgaccaggtcacttgtctcattcccaacagcgagtatatgaggattttgtt
cggtttccctggcaaaatcaatctggccagagctcaaatactgtactttctggtccacat
acaccttctggtgtatctgtcagttctggattgtctcgcacatatgtttcatctgcagga
cagcttaaccctggcttttattcagctgggcttggaactattggattgagtgctgtaact
cagccctcagatgttgaggaaatggagcctagttctgctcagtttcttagtggttcttca
actcgcattggagcaattgatggtgttattcctcatggctctaagatcaattctgttgct
tcattttctcaacttccgctgcacctgaagtgttcagtggggacctttaatgctgcaaaa
gtcagaaactgtcatataaatattttatcatttcatctgatctctgctcttggttttcta
aaaggaattgggaacttttcccgtcatacctatgattctacctcagggcacttgggaagt
ggaactttagagtcgtcatcatctgtggcagatgttctggaaaaatatcaaattgttgca
cagaagttggaaactttggtgacgaaggattctggggagacagaaattcggggagttatt
gctcagattcctgaattgatactgaaatatgtaaatcgggatgaagttgccctggctgta
gcccaaaaggtttttaatagtttatacgaaaatgtttcaaattctatacatgttgctgct
catctttcgattttggtggctattcgtgatgtttgcaagaatgtcatgaagcatcttaca
agttgggtgatttattcgaaggaggaaaggaagtttaatacaaatgtaactgttggcctt
atacggaaggatttgctagatcttgacgaatatgacaagcacatgggaaagctaattgat
gctggaaggaataaggctgctacggagtttgcaataaatctccttcaaaccttgttggtt
caagaatcaagagtccatctgtcagaacttcctggtctcgtggatgccttggcaaagctt
gcactgagagcaggatctccagaatcattacaacagttggttgaaattgcaaagaatcct
gctgcaaatgaagaaattctttctggtgttactgttggcaaggaggatcggaccaagcaa
actagtgaaataatggtatctgatagttccatgacaagcagggaagggtacatcaatgct
gaatctgttggattagatcctgcaggttttcatgatcaggtgatttattcgaaggaggaa
aggaagtttaatacaaatgtaactgttggccttatacggaaggatttgctagatcttgac
gaatatgacaagcacatgggaaagctaattgatgctggaaggaataaggctgctacggag
tttgcaataaatctccttcaaaccttgttggttcaagaatcaagagtccatctgtcagaa
cttcctggtctcgtggatgccttggcaaagcttgcactgagagcaggatctccagaatca
ttacaacagttggttgaaattgcaaagaatcctgctgcaaatgaagaaattctttctggt
gttactgttggcaaggaggatcggaccaagcaaactagtgaaataatggtatctgatagt
tccatgacaagcagggaagggtacatcaatgctgaatctgttggattagatcctgcaggt
tttcatgatcaggtttctgctgtatttaaggaatggtctcagatatatggacttcatggc
gcaaatgatgacgtgtgcatgcaatttattgcacaattgcatcaaaatggatatctagat
ggggatgggatgtctgatcgttttttccgtattctcactgaattctctgtcgaagactgc
cttccctctgagcaaaatagttcaagtacttggttaattcagtcagctcaagctacccaa
aatttatcatttgttccgatcgatgcttatgcaaagcttgtttctttcattctgaggtat
tgcattatggagcatggaccaagtaaactcttgctatggccaaagattctatcggtaact
gtcagaattgtacagagagatgcagaggtgaagaagggatctttcaatccaaggccatac
ttcaggttgcttatcaactggcttttcgatcttgtttcccaggatcctgcctcagacatt
gctaactttcaggttttgatcatttttgcaaatgctttccatgcgttgcagccccttaaa
gttcctgcattcagctttgcatggcttgagctggtgagtcactgcagttttatgccaaaa
ttgctaactatcaatgtgccaaaaggttggatctatgttcaatgtttgctggtagacttg
ttcagattcatggagccttacttgaggaatgctgaacttggagaaccgattcacagtctg
tacaagggaactctgagggtgttacttgtgctgttgcatgattttccagagtttctgggt
gataatcacttcagcttctgtgatgtgatcccttcaagctgtattcagatgcgaaatgtt
atccttagtgcatttccacgcaatatgaggctgccggatccttctactcccaacttaaag
attgacctgctaccagaaatgcatagatcaccgcacatattttcagaggttgatgctgct
ctaaaagctaagcaaatgaagtctgatgtggacgagtatctgaagacaagacatcaggga
tcgccattcttatcagaattgaagcaaggattactgctatcacaaaatgaggcagctcaa
gctggtacccggtacaatgtacccttgataaactcacttgttctgtatgtgggaatgcag
actatcgagcaactgcagacaaagaccccgcctcccctttcccagccaattactcacaat
ggtccaatggagttatacctgatgggtcctgccttagatatttttcaaactttgattgtg
gacctggatacagaagggcgctaccttttcctcaatgcaattgcaaatcagctgcgctac
cctaacaaccacacacatctcttttcctttgttcttctctacttgtttaatgaagcaagt
caggaaatcatccaggagcagataacgcgagtgttgtttgaacgccttattgttaacaga
cctcacccttggggtcttctgacaacctttatcgaactcatcaagaatcctagatacaac
ttttggaaccgtggcttcacaaggtgtgcgccagagattgagaaactgtttgaatcagtt
tcaaggtcatgcggtggacctaagcctgtagatgagtctattgtgtctggtgtgatcgct
gacaacatgcactaa
DBGET
integrated database retrieval system
