Pistacia vera (pistachio): 116128070
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Entry
116128070 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116128070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116128070
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116128070
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116128070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
116128070
NCBI-ProteinID:
XP_031269601
LinkDB
All DBs
Position
Unknown
AA seq
2413 aa
AA seq
DB search
MLGLSSMIPSQIRFLLQSLTEANADSVLRELCQFIEYGIGEGIIMLQTCLDHLNLRGTDS
RNPQLESIVASVFKYIMDKPNFGTVFSESLRSTEINEQLLEHLSNVLHLSVSERIGIGFA
LSDLENIDVILCGKNFCMAQIEKLCANPVPVNSAEQIQNIVMFLQRSSDLSKHLDSLMQM
LSLVQFKDLTEFALTPVLPDDLREAKYLREMDLFHECMDNDFDDILAEMEKEMSMGDVMK
ELGYGCTVDDTQCKEILSLFLPLTEINLSRILGTIAHTHAGLEDNHNAFSTFGLALGCGT
HSDLPPLSSWNVDVLVKTIKQLAPSTNWTQVIENLDYEGFYIPNEEAFSFFMSVYKYACQ
DPFPLHAICGGVWKNAEGQLSFLKYAVTATPEIFTFGHSARQLTYFDEVHGHKLQLGHAN
HAWLCLDLLDVLCQLAERGYASFVQSMLEYPLKNCPEVLLLGMAHVNTTYNLIQYEVSFT
VFPMLIKNTMCSGMILHLWHVNPNLVLRGFIDTHNTEPDSLIRILDICQELKILSSVLEM
VPSLSAIRLAVLAAQKELVDLEKWLSGNLSTYKDFFFEECLKFVKEIQFGRSQDFSAKPF
LHSGALLNLYMEKITTIMKVLKSHTGLITSAKLLDELEKLHATILDSNPKLQNGGASESS
ATDGYADDIEAEANSYFHQMFSGHLTIEAMVQMLARFKDSSVKREHSIYECMIANLFEEY
RFFPKYPDRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRSTHSELVAFIERALARISAGHLEPDGTNSASTVHQLG
SSQATSGNGEVNSSTIAQSGPQHSSQIQLQARNESSLDERHKISAPSSNDVKPLLSSTGQ
PSVVPLGDNSSVQKLQNTISAPAMLSASPGFVRPSRGVTSTKFGSALNIETLVAAAERRE
TPIEAPASEAQDKISFIINNISALNIEAKAREFTEILKEQYYPWFAQYMVMKRASIEPNF
HDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLA
EIXSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKERKREIEGNPDFSNKDVGASQPQ
MIPEVKPGIISPLNHVELPLEVASPPNSGGPTHLMSQYAAPLRLSSGTLMEDEKLAALGL
SDQLPSAQGLFTQSQTPFSVSQLSTPIPNIGTHVIINQKLSTLGLHLHFQRVVPIAMDRA
IKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEP
LRTSISSQLRTSLQGLSIANELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEITQ
QLSLRRKHREGVGSSLFDPSMYAPGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQ
SNQSSHAMSAGSLTSSSDAGLTGAYGLAAGQVNPGYSASAGNTEFEAVSRSLDVSSGSIE
SSSAALLSVPSTNIVTADSGGIQHNSENDSVNASFTPTAPAPELLSVDSTEAGKEPGATS
QSLPSPVTPERLGSGVLEPSLNTRDALDKYHILAQKLDALVASDATEADVQGVISEVPEI
ILRCISRDEAALAVAQKVFKGLYENASNSLHVGAHLAILAAIRDVCKLVVKELTRWVIYS
DEDRKFNKDITVGLIRSELLNLAEYNVQMAKLIDGGRNKAAMEFAISLLQTLVTDESRVV
SELHNLVDALAKVAAKPGSSESLQQLIEIVKNPVANVTASGATAGMDDKARQSKDKKAPS
LSTANREDYNSMEPVDPDPAGFSDQVYVLFKEWYHICELPGTNDAACTRYILQLHQSGLL
KGDDMTDRFFRNLTKIAVEHSIQSESPQQVQSVSFHTIDSYAKLVSSVLKCLPVEQGSTK
IFLLSKILTVTVRFILKDEEEKKASFNPRPYFRLFINWLLDLGSLDPAIDGANIQILTAF
ANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLIGNSQKGWPFIQRLLVDLLQFLEPFLR
NAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNM
RLPDPSTPNLKIDLLPEIRDAPRILSDVDAALRAKQMKADVDEYLKTAQPGSSFLTELKQ
KLLLPPSEVASAGTRYNVPLINSLVLYVGMQAIQQLQTRTPHAQSTGNNSSLTVFLVSAA
LDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRV
LFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVE
DSMVSGWVSDSTH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgcttggcctttcctctatgattccaagccagattcggttcttgctccaaagcttgacc
gaagcaaacgccgattctgttttgcgagagctctgtcagtttattgaatatggaattggg
gaaggcattatcatgcttcaaacttgcttggatcacttgaatcttcgtggaactgactca
aggaatccgcagcttgaatcaattgtagcatcagtttttaaatacatcatggataaacca
aattttggtaccgtatttagtgagtcactaaggagtactgagatcaatgagcaactgctg
gagcatttatccaatgtgctacatttatctgtatctgaaaggattgggattggtttcgcc
ttgtctgatttagaaaatattgatgtaatattgtgtgggaagaacttttgtatggctcag
attgagaagctatgtgccaatcctgttcctgtgaattcagctgagcaaattcagaatatt
gttatgtttcttcagcggtcaagtgacctttccaagcatcttgattctcttatgcagatg
ttgtctttagtgcaattcaaagaccttaccgaatttgccttaactccagtgcttcctgat
gatctgcgtgaggctaagtatttaagagaaatggatttgttccatgaatgcatggataat
gattttgatgatattttagcggaaatggaaaaggaaatgagcatgggagatgttatgaag
gaactaggttatggatgtacagttgatgacacacagtgcaaagagattctctctcttttc
ttaccgttgactgagattaacctttctaggatacttggtacaattgctcacacccatgct
gggctggaagacaaccataatgcattttcaacatttggcctggcccttggttgtggcact
cattctgatttgccaccattaagctcttggaatgttgatgtccttgtgaaaacgatcaag
caacttgctcctagcaccaactggactcaagttattgagaacttggattatgagggtttc
tacatccccaatgaggaggccttctcttttttcatgtctgtatataaatatgcatgccag
gatccattccctcttcatgccatttgtgggggtgtttggaagaatgctgagggccagtta
tcttttcttaaatatgctgtaacagcgacaccagaaatatttacctttggccattctgca
aggcagctgacttattttgatgaggtgcatggccataagcttcaacttggacatgcaaat
catgcttggttgtgtcttgaccttctagatgtgctttgccaactagctgagaggggttat
gccagctttgtccaatcaatgcttgagtaccctctcaaaaactgccctgaagtcttgctt
cttggaatggcacacgttaatactacttataatctcatccagtatgaagtatctttcact
gttttcccgatgttaataaaaaataccatgtgcagtggtatgattcttcacctctggcat
gtgaatcccaatcttgtattgcgaggattcatagatactcacaacacggaacctgacagc
ttgattagaatattagacatatgtcaggaactgaagatcctatcatcagttctagagatg
gtcccttctctttccgctatcagattggcagttcttgctgcacaaaaagaacttgtagac
cttgagaagtggctgagtggtaacttaagtacatacaaggatttcttctttgaggagtgc
ctgaagtttgtcaaggagattcagtttggtagatcacaggatttttctgccaaacctttc
cttcattctggtgctctattgaatctttacatggaaaagatcactactattatgaaggtt
ttgaaatcgcatactggcttgattacttcagccaaactccttgatgaactggaaaagttg
catgcaacaatcttggattctaatccaaaactacagaatggtggagcttcagaatcatcg
gcgactgatggatacgcagatgatattgaggcagaagcaaactcttactttcatcagatg
ttctcaggtcacttgactattgaagcaatggttcaaatgcttgcacgattcaaggattct
tcagtgaaaagggaacactcaatttatgagtgcatgattgcaaacctgtttgaggaatac
agattctttccaaagtatcctgacaggcagctcagaattgctgccgttctctttgggtcc
atcatcaagcatcagcttgtaactcatctcacccttgggattgccctgcgtggtgtttta
gatgcattgcgtaaacctgctgattcgaaaatgtttgtgtttggtacaaaagcattggag
cagtttgtggatcgtctgattgagtggccacagtattgcaaccatattttacaaatatct
cacctgcgtagtacacactcagagcttgttgctttcattgaaagggctcttgccaggatt
tcagctgggcatttggaaccagatggaaccaatagtgcttcaactgttcatcagcttggt
tcttctcaggctacctcaggaaatggggaggttaatagttctaccattgcacaatctggg
ccgcaacattcttctcagatccagcttcaagcgagaaatgaaagttctcttgatgagcgt
cataaaatttctgcaccctcatcaaatgatgtaaaaccacttctatcttccactggacaa
ccttcagttgttccattgggtgataattctagtgttcagaagttgcaaaacacaatcagt
gctccagcaatgctttcagcctctcctggttttgttcgtccttcccgaggagttacatca
accaaatttggctctgctttgaacattgaaacactagttgctgctgctgagagaagagag
actcccattgaggctccagcatcagaggctcaggacaagatatcatttataatcaataat
atttctgctctgaatattgaggccaaagctagagaattcactgaaatattgaaggagcag
tactatccatggtttgcgcagtatatggttatgaaaagagcaagcattgaaccgaatttt
cacgatttgtacttaaagtttctggataaagttaattcaaaggctttgaacaaagagatt
gtccaggccacatatgagaactgcaaggttctattaggatcagagcttataaaatcaagt
tcagaagagcgttcgttgcttaaaaatttgggtagctggcttgggaagttaacaatcgga
agaaaccaagttttaagggctcgtgaaatagaccctaaatcactgattatagaggcttat
gagaagggattgatgattgcagtcattccgtttacctccaaggttcttgaaccatgccaa
agtagtctagcatatcaacctccaaatccctggactatgggcattcttggattacttgct
gagatctaatcgatgccaaacctgaaaatgaacctcaagtttgacatagaggttctattt
aagaaccttggtgtggatatgaaagacataacaccaacgtctcttctcaaggagcggaaa
agagaaattgaggggaatcctgatttttctaataaagatgttggagcatcccagcctcag
atgattcctgaagttaaaccaggaattatttctccgctaaatcatgttgaattaccactt
gaggttgccagcccacctaattctgggggccctacacatttaatgtctcagtatgctgct
cctcttcgtctttcttctggtactttgatggaggatgaaaaactagcagctcttggcttg
tctgatcagcttccttctgctcaaggactgtttactcaatcccagacacctttttctgtt
agtcagctttccacgccaatacctaacattggaactcatgttatcatcaatcagaagctc
agtaccttgggcttgcacttgcactttcagagagtggttccaattgcgatggacagagct
atcaaagaaatagtgtcaggcattgttcaacgcagtgtttctatagcgactcagacaaca
aaagagcttgttttaaaggattatgcgatggaatcagacgagacacgcatttataatgca
gcacacttgatggttgcaagtttggcaggaagtctagctcatgtgacatgcaaggagccc
ttacgtacttctatatcaagccaattgaggacttcactgcaaggtttaagtatagcgaat
gaactcctagaacaagctgtgcaacttgttaccaatgacaaccttgatctcggctgtgcg
gtcattgagcaggctgccacagataaggcgattcaaacaattgacggggagataactcaa
caactttctttaagaagaaagcatagagaaggtgttggttcctcattatttgatccaagc
atgtatgcaccaggttctatgggtgttgttcctgaggccctccgccctaaaccagggcat
ttgtctgtttctcaacagcgagtttatgaggactttgttcgacttccttggcaaaaccaa
tctaatcagagctcacatgccatgtctgctggttctttgacttcatccagtgatgctggt
ctgactggtgcatatggtttggcggcaggacaagttaacccaggctactcagcaagtgca
ggaaacacagaatttgaagcagtctctcgctcattggatgtttcttctgggtcaattgaa
tccagttcagctgccctgttgagtgtaccatcgaccaatattgtgacagctgatagtggt
ggtattcagcataattctgaaaacgactctgtcaatgcttcttttactccaactgctcca
gcccctgaattactttctgtggattcaactgaggctggaaaagaaccaggagctacttca
caatccttaccatcacctgtcacccctgaacgtcttggaagtggtgtgttagaaccttcg
ctaaacacaagggatgcattggataaataccatatccttgcacagaagttagacgctttg
gtagccagtgatgctacagaagctgatgttcagggagtgatttctgaggttcctgagata
atactaagatgcatcagtcgggatgaagctgccttggctgtggctcaaaaggttttcaag
gggttatatgagaatgcttcgaacagtcttcatgttggtgctcatcttgcaattttggct
gccattcgtgatgtttgcaagcttgttgttaaggagctcacacgttgggttatttactca
gatgaggatagaaagttcaacaaagatattacggttggccttattcggagtgaattgctg
aacctcgcggagtacaatgttcagatggcaaaacttatagatggtggaaggaacaaggct
gcaatggagtttgccatttcccttctacaaactttggttacagatgaatccagagtcgtt
tcagaactccacaatcttgtagatgcattagcaaaggttgctgcaaaacctggttcttct
gagtcactacaacagttgattgagattgttaagaatcctgttgctaatgtaactgcatct
ggtgctactgctggaatggatgataaggctaggcaatccaaggacaaaaaggctcctagt
ctctccacagcaaacagggaagattataacagcatggagcccgtggacccagatcctgct
ggtttttctgatcaggtctatgtgttgttcaaggagtggtaccacatatgcgaacttcct
ggcacaaatgatgcagcttgtactcgttacatcttacaattgcatcaaagtggactgctg
aaaggggatgatatgacagatcgttttttccgaaaccttacgaaaattgctgttgaacat
agcatacaatctgaatcacctcaacaagtgcagagtgtatcctttcataccattgatagt
tatgcaaagcttgtttcatcagtcctgaagtgtttgcccgtggaacagggatcaactaaa
atctttcttttgtcaaagattttgaccgtcactgtaagatttattctaaaagatgaggag
gagaagaaggcatcttttaatccaagaccatatttcagattgtttattaactggctgcta
gaccttggctcattggatcctgctatcgatggtgcaaacattcagattttgacagccttc
gcaaacgcattccatgctttacagccccttaaagtcccggcattcagctttgcatggctt
gaattggtgagtcacaggagtttcatgcctaaattgctcataggaaattctcaaaagggt
tggccttttatccaacgtttgctggtagatctgctacaattcctggagccatttttgaga
aatgctgaactgggagttccggttcgctttctgtataaaggtacacttagagtgctgctg
gtactccttcatgatttcccagagttcctatgtgattatcattttaccttttgtgatgtg
attcctccaagctgcatacaaatgcgcaatattattctcagtgcttttccccgcaatatg
aggctaccagatccatctactcccaacttaaagattgatttgcttccggaaatcagagat
gctcctcgaattctctctgacgttgatgcggctcttagagcaaaacagatgaaggctgat
gtagatgagtatctcaagacggcacagccaggttcctcgtttttgactgaactgaagcag
aaattgctccttcctcctagtgaagttgcctctgctggtactcgttacaatgtaccattg
atcaactctcttgtgctttacgtaggcatgcaggccatccaacaactgcaaacaagaaca
ccacatgcacagtcaacaggcaacaatagttcgcttactgtgttcttggtgagtgctgcc
ttggatattttccagacgttgatacaggatctcgatactgaagggcgctatctcttctta
aatgcggctgctaaccaacttcgctatccaaacaatcacactcattatttttcctttgtc
ttactttatctgtatgcagaagcaaaccaggaaattatccaggagcaaattacaagagta
ctgttcgaacgtcttattgtcaatcgacctcatccatggggccttcttataaccttcata
gagctgataaagaatcctagatacaacttctggaaccagtctttcattcggtgtgcacca
gagattgagaaactgtttgaatcagttgctaggtcatgtggaggtctaaagcctgtggaa
gatagtatggtctcaggttgggtttccgacagcacacactga
DBGET
integrated database retrieval system
