Pistacia vera (pistachio): 116128524
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Entry
116128524 CDS
T07386
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116128524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116128524
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
116128524
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_11
TPR_17
TPR_1
TPR_2
TPR_14
TPR_16
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_7
TPR_20
BTAD
DUF6584
Motif
Other DBs
NCBI-GeneID:
116128524
NCBI-ProteinID:
XP_031270094
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MNKTEEENEALLKQLEESLEANPEDPSVHFDLGVYLWERSESKEKAAEHFVKSAKFNPQN
AAAFRYLGDYYRGVCSDNHRALKCYQRAISLNPDDSDSGDGLCDLLEQGGKESLEIGVCR
EASEKSPRAFWAFRRLGYLQLHNDNWSDAVQSLQHAIRGYPTSPRLWEALGLAYHRLGMF
TAAIKSYGRAIELDDSSIFAFLESGNIFLLLGSFRKGVEQFQQALNISPQNVSAHYGLAS
GLLGWAKECINMGAFRWGASLLEDACKVAESNTSLVGNLSSVWKLHGDIQLTYAKCFPWI
EESQSLELDVETFHASIISWKRTCLMAAISARNSYQRALLLAPWQANIYTDIAITLDLIS
SLNESCENHLSAWQLSEKMVLGSLFLEGDNHEFWVALGCLSDHNALKQHAFIKGLQLDVS
LAVAWAHLGKLYREEGEMKLARQAFDSARSIDPSLALPWAGMSADAHAREPSLDEAFESC
LRAVQVLPLAEFQIGLAKLAQLTGHLSSPQVFGAMQQAIQRAPHYPESHNMYGLVCEARF
DYRAAAAAYRLARSAISSASGTVQKSHFQDISINLARSLSRAGNALDAVQECENLEKEGM
LDAKGLQIYALSLWQLGKHELALSVARNLGASVSTLELTSVAASVSFICTLLYHISGLDS
AINSILKMPKGLFQSSKMSFVVSAIHSLDRNNQLKSVVSSSRSCVSSSEEILGMHYLVTL
DKLVKIRSESRLGFHSGIIHLRKILHIYPNSILIRNLLGYLLLSSDEWKYTHVSSRCCIG
TFDCTEKEGLKSAWEILGAGGVACNVIGNTELKFTFPTCGYECLNRPKAVQELQKWLHRE
PWNHNARYLLILILIQKAREERFPQHLCTILERLIVVALSNEFYSSKQMFYQYQKFQLLL
CASEISLQSGNITDCINHAKKASGLLLPDSYLFFGHLVLCRAYAAEGNVVELREEYVRCL
ELKTDYHIGWICLKVIESQYQVQVDSDVIELSFQECSKEGNYSRKMWMAVFNLIMGLVFI
WKRDFLSAEKSLAQACSVADAESCLFLCHGTTCMEIARQCCDSQFLALAIRSLTKAQESS
LFQLPVVSMLLAQAEGSLSSKEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMQSKAGSG
SSSTRVEFCQSPQKWVLRAIHTNPSCLRYWNVLQKLTD
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaacggaagaggaaaacgaagctctgttaaaacaattggaggaatctttagaa
gccaatccggaggacccttccgttcactttgatctcggggtgtacctgtgggagagatca
gaatcaaaggaaaaagcagccgagcattttgtaaaatcggccaaatttaaccctcaaaac
gcagcggctttcagatatttgggtgattattacaggggagtttgctcagataaccataga
gctctcaagtgttaccagagagccatttctctcaatcctgatgattctgactctggggat
ggtttatgtgatttgttggagcaaggaggaaaagagagcttggaaataggcgtatgcaga
gaggcttcagagaagtcaccgagggctttctgggcatttcgacgattgggttatctgcaa
ttgcataacgacaactggtctgatgctgttcagagtcttcaacatgccatacgaggctac
ccaacctctcctcgtctctgggaagctcttggtcttgcttaccatcgacttggcatgttt
actgctgctattaagtcatatgggcgagctattgaattggatgattcaagcatctttgcg
tttcttgaaagtggaaacatctttttgttgcttggttcttttagaaagggagttgagcaa
tttcaacaagctcttaatatttcacctcaaaatgtgtctgcacactacgggcttgcttct
ggactacttggttgggcaaaagaatgtattaatatgggtgcatttagatggggagcttca
ctgttagaggatgcatgtaaagttgcagaatctaatacttctttagtaggaaacctatca
tctgtatggaagttgcatggtgacattcagcttacatatgcaaaatgtttcccatggatt
gaagagagccagagtttagaattagatgttgaaactttccatgcctccatcatttcctgg
aagagaacctgccttatggcagccatttctgccagaaattcttatcaacgagctctgctt
ttggctccatggcaagccaatatctatactgatattgcaataactttagatctcatttct
tctttgaatgaaagctgcgagaatcacctcagtgcttggcagctgtctgagaagatggtt
ttgggttctttgtttcttgagggtgataaccatgaattttgggttgcactgggatgttta
tctgatcataatgctttaaaacagcatgcttttattaagggattgcaattggatgtatct
ttagctgttgcttgggcacaccttgggaagctatatagagaggaaggtgagatgaagtta
gcaagacaagcatttgattctgctagaagtatagatccttcacttgcattaccatgggca
ggcatgtcagctgatgctcatgctagagagccttcactagatgaagcttttgagagctgt
ttacgagctgtgcaagtattacctcttgcggagttccaaattggtctggcgaagcttgct
cagctcacggggcacctttcatctccacaggtttttggagccatgcagcaggcaattcag
cgtgctcctcactatcctgaatctcataatatgtatggactagtttgtgaggcacggttt
gactatcgtgctgctgctgctgcttatagactagcacgctctgcaattagctctgcttca
ggcactgttcaaaaatctcatttccaagatatatccattaatttggccagatcactcagt
agggcagggaatgctttagatgctgtacaagaatgcgaaaatttggagaaagaaggtatg
ctcgatgctaagggtttgcaaatatatgctttatccttgtggcaacttggtaaacatgag
ctagccctctctgtggcaagaaatttgggtgcaagtgtttctactctggaactgacatct
gtagcagcatctgttagttttatatgtacattgctttaccacatatctggactggattca
gccattaatagcattctgaaaatgccaaaggggctgtttcagagttcaaagatgagcttt
gtagtgtctgccattcattctcttgatcgtaataatcagcttaaatcagtagtttcaagt
agccgtagctgtgtttcatcttctgaagaaatccttggaatgcattatttagtaacactt
gataaattggtaaaaatcagatcagaatcccgccttggatttcacagtggaatcattcac
cttaggaaaattcttcacatttacccaaatagtattttgatcaggaacctacttggttat
cttttgctatcaagtgatgaatggaaatatacccatgtctcaagcagatgctgcataggg
acttttgactgtacggaaaaggaaggtctaaagtcagcatgggagatccttggtgctgga
ggggttgcttgtaatgtgattggaaatactgaactgaagtttactttcccaacctgtggt
tatgagtgcctcaatagaccaaaagctgtccaagagttgcaaaaatggttacatcgagaa
ccatggaaccataatgcacggtacttgcttatacttattctcatacagaaggctcgtgaa
gagaggtttcctcaacatctgtgtaccatacttgagcggttaattgttgtggcactctcc
aatgaattttattctagtaaacaaatgttttatcaatatcaaaagtttcagcttcttctt
tgcgcttctgagatcagtttgcagagtgggaatataactgactgtattaatcatgcaaaa
aaggcttcaggacttctgcttcctgatagttaccttttttttggacacttggtattgtgc
cgtgcctatgccgcagaaggcaatgttgtagaacttagggaagagtatgtaagatgctta
gagcttaagacagattatcatattggctggatatgtctcaaagtcatagaatctcaatat
caagtccaagttgattcagatgtcatagaattgagcttccaggaatgctcaaaagagggg
aattattcaaggaagatgtggatggctgtatttaatttaataatgggtttggttttcata
tggaaacgggattttctatctgctgaaaagagtcttgcacaagcttgttctgtggcggat
gctgagagttgcctttttctctgtcacggtactacatgtatggaaattgccaggcagtgt
tgtgattcacaatttttggcacttgctataagaagtcttaccaaagctcaagagtcttcg
ctttttcaattacctgtggtgtcaatgttgctagctcaagcagaaggaagcctatcctcc
aaggaaaagtgggagaaaaaccttcgtctggaatggtttacttggccaccagaaatgagg
cctgcagaactttttttccaaatgcatttgcttgcaatgcaatcaaaagctgggtctggc
tcttcttcgacaagagtggaattctgtcagagcccacaaaaatgggttctgcgagcaatt
catacaaatccttcttgtttgagatattggaacgttctgcaaaagcttacagattga
DBGET
integrated database retrieval system
