Pectobacterium versatile: OA04_02510
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Entry
OA04_02510 CDS
T07772
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pvz
Pectobacterium versatile
Pathway
pvz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OA04_02510 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvz03021
]
OA04_02510 (rpoB)
03400 DNA repair and recombination proteins [BR:
pvz03400
]
OA04_02510 (rpoB)
Enzymes [BR:
pvz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OA04_02510 (rpoB)
Transcription machinery [BR:
pvz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OA04_02510 (rpoB)
DNA repair and recombination proteins [BR:
pvz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OA04_02510 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AVT56926
LinkDB
All DBs
Position
271438..275466
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRENVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFGRIHAVLVSGGVEADKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQKAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacag
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggtcagtacggtttggaagctgcattccgttctgttttccctataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttgggcgagccagtattt
gacgttaaagaatgtcagatccgtggtgtgacgtactctgcgccgctacgcgtaaaactg
cgcctggtgatctacgagcgcgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgataacggtacctttgtgatcaacggt
actgagcgcgtaatcgtgtctcagttgcaccgtagtccaggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggatttcgagtttgatccgaaggataacctgtttgtccgtatcgaccgt
cgtcgcaaattgcctgcgaccattatcctgcgcgcgctgggttattccaccgaacagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataaattgcagatggat
ctggttcctgagcgtctgcgtggtgaaaccgcatcgtttgatattgaagcgaacggtaaa
gtttatatcgaaaaaggtcgccgcatcactgcgcgtcatatccgtcagttagagaaagac
ggtattgagcgcattgaagtgcctgttgaatatatcgctggcaaagtactgtccaaagat
tatatcgacgagagcaccggtgaactgatcggcgcagccaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggtcacaaacgtattgagacactgttcaccaacgat
cttgatcatggtgcatacatgtccgaaaccgtgcgcgtcgatccgtcaaacgatcgtctg
agtgcgctggttgaaatctatcgcatgatgcgtcctggtgaaccaccaacgcgtgaagca
gcagaaacgctgtttgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgttacgtgatgagatcgaaggttccggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtattcgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgctgtaaaagagcgtctgtct
ctgggcgacctcgatacgctgatgccacaggacatgatcaacgccaagccgatttcggct
gccgtgaaagagttcttcggttcaagtcagctgtcacagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctccgcattgggtccaggcggtctgacgcgt
gaacgtgctggctttgaagttcgtgacgtacacccgactcactacggtcgcgtttgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtttatgcgcaa
acgaacgaatacggtttccttgaaaccccgtatcgtcgtgtgcgtgaaaatgtggtgacg
gatgagatccattacctgtctgcgattgaagaaggtaacttcgttatcgcacaggcgaac
accaatttggacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggc
gagtccagcttgttcagccgcgatcaggttgaatacatggacgtttccacacagcaggtg
gtttccgtcggtgcatccctgattccgttcctggaacacgatgacgccaaccgtgccctg
atgggtgctaacatgcaacgtcaggccgttccgaccctgcgcgctgataagccgctggtt
ggtaccggtatggaacgcgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtcgatgcttctcgtattgtaatccgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtgtcactgggtgagccggtagaacgtggt
gacgttctggcagatggtccgtccaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccatccacattcaggaactggcctgtgtgtct
cgtgacaccaagttagggcctgaagaaattactgcggacatcccgaacgtgggtgaagca
gcactttctaaactggatgagtccggcatcgtttacatcggtgcggaagtgaccggtggt
gacattctggttggtaaggtaacgccgaagggtgaaacccaactgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagagttgcagattctggaagcgggtctgtttggacgtatccacgcagtgctggtt
tctggcggcgtagaagctgacaaactggacaaactgccgcgcgagcgctggttggaactg
ggtctgactgatgaagataagcagaatcagttggaacagctggcagaacagtatgatgag
ctgaagcacgagtttgagaaaaaacttgaagctaagcgccgtaaaatcacccaaggcgat
gatctggcaccaggcgtgctgaaaatcgttaaggtttatctggccgttaaacgtcagatc
caaccgggtgacaagatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacatcggtcagattctggaaacccacttgggtatggct
gcgaaaggtatcggcgagaaaatcaacgccatgctcaaacagcacgaagaagtgaccaaa
ctgcgtgagttcatccagaaagcctatgacctgggcgacgatgtgcgtcagaaagtcgac
ctgagtactttctcagacgaagaagttatgcgtctggctgaaaacctgaagaaaggtatg
ccaattgcaacgccagtatttgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattaccctgtacgatggacgtaccggtgagcaa
tttgagcgtcaggttaccgtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgctcgttccaccggttcttacagcctggttactcaacagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagagatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaatcatcagatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgttcgctgggtatcaacatcgagctggaa
gaaaagtaa
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