Pleurodeles waltl (Iberian ribbed newt): 138262473
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Entry
138262473 CDS
T10800
Symbol
COL6A6
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510
Focal adhesion
pwl04512
ECM-receptor interaction
pwl04518
Integrin signaling
pwl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138262473 (COL6A6)
04518 Integrin signaling
138262473 (COL6A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138262473 (COL6A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138262473 (COL6A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pwl04147
]
138262473 (COL6A6)
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138262473 (COL6A6)
Exosome [BR:
pwl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138262473 (COL6A6)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138262473 (COL6A6)
Hyaluronan
Extracellular matrix or blood plasma proteins
138262473 (COL6A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
138262473
NCBI-ProteinID:
XP_069068467
LinkDB
All DBs
Position
10:complement(1018060331..1018506821)
Genome browser
AA seq
2271 aa
AA seq
DB search
MSSMKSLPFFIFVWVIPSMTVGSAPQYADVVLLVDSSDNLGSKAFPFVKILLNRALSSLD
LGADKYRAALAQYSDDIHTEFQLTTYKAKNPILNHIKKNVVFKGGSLRTGNALTKVHETI
FKGTPEERDRKQFPKVLVVFTSGTSLDNVEQPALELRQDGVKIIAIGLQKASLPNLQAMA
SSSDLIYRIPSPKEIVHFSQTLSEIITNVSKTEYGIPTSPATRTAASPTTASTRVTGRPS
TTTAGHIPFVSSTATTNTSYVNNCYQSALADIVFMVDESVSDTENFKLIQGFLHETINAL
DVKKRCMRIGLVMYSNISKVITSLGENTEKDDVLRLLQTLSTSYGTANTGAAINFTRSEV
FSESKGSRKNQGIEQIAVLITHRPSNDSVIEAAQHLRRDGVSFFVIGVQDASLVQMTQMA
SHPPEQFVVDIKLFSNLTDLSQIFWKKISNEVYMKVSAFAGKTEIIQTACVDTEEADIYF
LIDSSGSITQVDFQEMKTFLVEVVDMFNIGPSTVRVAAVQFSETKYISLEIKIDAYSNKK
DLKLAIQNIRQIGGGTEIGGALNYMLSLIKAGSNSRRGKVPRYLIVLTDGESQDSVKKPA
EMLRAELVSVYAIGVKEANKTQLYEIAGKDERVHFVENFDSLKVIKNKIVPQMCSNEACK
RMEADIMFLVDGSGSIGEANFEKMKTFMRELVNKSDIGINKVQVGAVQFSDTNKEEFQMN
KHTNKRDIYSAIDSMTALGQGTRTGEALKFVSDYFKKPKGGRMQVKQFLILITDGEAEDE
VKEPATLLREAGIVIYSVGVQGANITQLEEISGKSKMFFYVDNFDVLKKIEDELLLGICS
PYEDCKRIERADIVFVIDSSSSIDDSEYATMKEFMISLVNKSDVGIQKVQFGAIKYSNAP
ETIFYLNDYDTKSKVVEILQNDPHKGGDTYTANALRHSEMLFLERFGSRRASGVPQILFV
LTDGESHDNGLLNGTAKRLRDSGIIIYAIGIDQANTEELMAMAGTSEKMFFVGTFDKLKE
IYINVSEGLCNLSKPECEVKKADVVFLIDGSTSIGVSDFSVMKDFMTSVVAGFNTQPGMV
HIGVAQYSDNYKEEFRLSPSSKDFDIKTKVGDIHQITGNTLIGRALELVDKSHFNPQVGS
RINEGIQQLLLVITDGKSQDDVASAAEALRKKSINIYALGVGDVSDNQLLQIAGSPEKKF
TINNFDELSSIKKRIVQNMCKEESKSNCHVDIVLGFDISTLAEGQMLLHGQSQLEARLPD
ILQMVTSLSTVSCSRGTNTHASLALHLKNSVTPIASKFQIYSKDILETLKAVKVKRPSRL
DASTMRSLWATFQNQSNAEAKVIVIFTDGLDGDVEELEKVSEQLRKEGLSALITVVLEGT
SGIHNISLIEFGRGFEYQSQLTIGMQDIGRRLFKALSHVSEKSCCCTLCKCIGDKGAVGT
YGTAGQKGRVGLKGLPGHAGEEGAPGDRGIPGPEGEQGVPGCVGTKGPKGTRGMHGTKGD
TGDGGIDGVRSEQGARGSPGNKGARGDPGYQGYPGIRGTPGDRGEKGFRGDPGESGADKV
EGGPRGEKGDEGEKGDFGPHGPPGSPGSKGKSKVEGRKGILGPKGSNGAPGFSGDPGAQG
IPGPEGNEGVRGETGTKGTQGLKGVPGAFGPEGVPGISGAPGPRGRKGLPGDSGKKGEPG
QDGWHGHVGEDGRDGYGAPGRKGGKGQKGFPGYNGPKGDRGDSGLPGDAGARGSRGKEST
ASIPGDAGWPGARGPPGRMGAKGAKGQAQSSPCDLIEFIRTKCRKYVLLNARIYHQFLHA
LAMPINLPLNEYLASATSLFYITQHTGFFFTGKPACPVYPTELVFALDMSKDVTADVFRK
MKEILLSVVSSLNIRESNCPTGARVAILSYNYNNKYLVRPSDIRSKSQLLTAVTGIPFER
SSSGRNIGRIMRFVARNVFKRTLQGANVRKVAVFFSNGQSEDAPSIQTAVMEFSALDIVP
VVIAFNSVPHVQEAFKLDTTGMFQILTHRARDELEPLIRRLQQCTLCYDRCKKEPLCQQD
IDPPPKLGTDAVFLLDSFQNVVEDQWLEAKDLLITLIDNFDIAKQPKTAGAGDRVALVRL
AAQGNATSRPWNPQVEFDLISYVNKNRMKRHIQDSVLQLSGPTVVGQTLKWAIDNMLSKV
PHPRKSKILFVISAGESSQWDKHTLKEASLKAKCQGFAIFVISMGPHFNRAELEGLASHP
VDHHLVQLGRLHKPDFQYASGFLKPFVIALKRGINKYPPAHLRTQCERTRF
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcatgaagagtctgcccttcttcatcttcgtctgggtgatcccttcaatgaca
gtgggaagtgcaccgcaatatgcagatgtggtccttttggttgatagctctgacaacctt
ggaagcaaggccttcccgtttgtgaagatcttattgaacagagccttgagtagtctggat
ttgggagctgacaaatatcgtgccgccctggctcagtacagtgatgacatccatactgag
ttccagcttaccacttacaaggcaaagaaccctattttgaaccatattaagaagaatgtt
gttttcaagggtgggtccctgagaactgggaatgctcttacaaaggtccatgaaaccatt
tttaaaggaacaccagaagagagagacagaaagcaatttcctaaagtgctagtggtcttt
acatccggcacctccctggataatgtggagcagcctgccctagagctgcgacaagatgga
gttaaaattattgcaatcggattgcagaaggcctctttgcccaatctacaagccatggct
tcatcatcagatctcatttaccggattccatcaccaaaagagatagttcatttttcccaa
accttgtctgaaattattacaaatgtctcaaaaacagaatatggtattccaacttcacca
gcaacgaggactgctgcctcccccaccactgcctccaccagagtcaccggccgcccctcc
actaccactgctggccacatcccctttgtttcctccaccgccaccacaaacacctcctat
gtgaacaattgttaccagtctgcactggcagacatcgtattcatggttgatgaatccgtc
agtgatactgaaaacttcaaacttatccaaggatttttgcatgaaacaataaatgcccta
gacgtcaagaaaagatgtatgagaattggtctggtgatgtacagcaacatttccaaagtg
attacttcactgggagaaaatacagaaaaagatgatgttttacgattactgcagactctt
tcaacaagctatggcacagcaaacacaggggcggccatcaatttcacccgttcagaagta
ttcagtgaatctaagggaagcaggaagaaccaaggcatcgagcagatagccgtcttgatc
actcaccggccttcgaacgacagtgttattgaagcagctcaacatctaaggcgagatgga
gtgtctttctttgtcattggagtccaagatgcaagtcttgtccagatgactcaaatggca
tcacatccaccagaacagtttgttgttgatatcaagttgttttcaaatctgacagatctt
tcccagatattttggaagaagatttcgaatgaagtgtatatgaaggtctccgcatttgca
gggaaaacagagataatccaaacagcttgcgttgacacagaagaggctgatatctacttt
ctcatcgatagttcaggcagcatcacacaagtggatttccaagaaatgaaaactttcctg
gtggaggtggtggacatgttcaatatcgggccaagcacggttcgggtggcagcggtgcag
ttttcagaaaccaagtacatcagcctggaaatcaaaatcgatgcttattccaacaagaag
gatttgaagctggccattcagaacatcaggcagataggagggggcaccgagattgggggt
gccctaaattacatgctctcgttgataaaggcaggctccaactcaagacggggcaaagtt
ccccgctacctgattgtactcaccgatggggagtcgcaggacagtgtgaagaagcctgct
gagatgctgagagctgagctggtatctgtgtatgcgattggagtcaaagaagccaacaaa
actcaactttacgagattgctggaaaagatgaaagggtccattttgtggagaactttgac
tctttgaaagtcatcaaaaataaaattgtcccgcagatgtgttcaaacgaagcctgcaag
cggatggaggcagacatcatgttcttggtggatggttcaggaagcataggagaagccaat
tttgagaagatgaaaaccttcatgcgtgagctggtcaacaaatcagacataggtattaac
aaggtacaggttggtgctgtccagttcagtgacacaaacaaggaggaattccaaatgaac
aagcataccaacaaacgtgacatttacagtgccatcgatagcatgactgctttgggtcaa
ggaacccgaaccggagaagccttgaaatttgtgtctgattactttaaaaaacctaaaggt
ggaaggatgcaagtcaaacagtttctcattttgatcacagacggagaagcagaggatgaa
gtcaaggaacctgcgaccttgttgagagaggcgggcatagtaatctattcagtaggtgtg
cagggtgcgaatataacccaactggaagagatcagtgggaagtcaaagatgtttttttat
gtcgataactttgatgtgttgaagaaaattgaagatgagctgctccttgggatctgcagt
ccctatgaggactgcaaaaggatagaacgcgcggacattgtgtttgtgatagactcttct
agcagcattgacgacagtgaatatgccaccatgaaagaattcatgatatccctggtgaac
aaatctgacgttggcatccagaaggttcagtttggggcaataaagtattcaaatgcccct
gagaccatcttttacctgaatgattatgacaccaagtccaaagttgttgaaatcctgcaa
aatgatccacacaagggaggcgacacatacacagccaatgctctgcggcactctgagatg
ctgtttttagagaggttcggtagccgcagagccagtggtgtccctcagatcctgttcgtc
ctcactgatggagagtcccacgataatggtctgctaaacggcacagccaagcgcctgcgg
gatagtggcatcatcatttatgccatcggaatcgaccaggcgaacacagaagaactgatg
gcgatggccgggacatcagagaaaatgttctttgtcggcacctttgataaactcaaagaa
atttacatcaacgtgtcagaaggtttatgcaacttatcaaaacctgaatgtgaggttaaa
aaagctgacgttgtcttcctaattgatggctccaccagcataggtgtctctgatttctca
gtgatgaaggacttcatgacatcagtggtggctgggtttaacacccagccaggcatggta
catatcggggtggcacagtatagcgataattataaagaggagtttaggcttagtccatca
tccaaagactttgacataaagactaaagttggagatattcatcagataacgggaaacacc
ttgattggcagagccctggagttagtagacaaatcccactttaacccgcaagtgggaagt
cgaatcaacgaaggcattcagcagctcttactggtcatcacagacggcaaatcacaggat
gatgtggccagcgcagcagaagccctgagaaagaagtccataaatatctacgctttgggt
gtcggggatgtcagcgacaatcagctgctccaaattgctggatccccagaaaaaaaattt
actattaataattttgatgagctgtcttcaattaagaaacgcattgtccaaaacatgtgc
aaagaagaatccaaaagcaattgtcacgtcgacattgttcttggatttgacatttccact
ctggcagagggtcagatgttactccacggccaatcacagcttgaagcacgcctacctgac
atcttgcagatggtgacctcgctcagcactgtgagctgcagccgaggcaccaacacacat
gccagtttagccctgcatctgaagaactccgtcacacccattgcctcaaagttccagatc
tacagcaaagacatcttagaaactctgaaagcggtgaaggtgaaacgtccctcgcgtctc
gatgcatcaaccatgcgctcactctgggcaacatttcagaaccaatcaaatgctgaagcc
aaggtgatagtgatcttcactgatggactagatggggatgtggaagagcttgaaaaagta
tcggagcaactcaggaaggaaggtttaagtgcattgatcactgtcgttctggaaggcacc
agtggaatccacaatatttcacttatagaatttggaagagggtttgaataccaatctcaa
ttaaccatagggatgcaggatattggcagaagattgttcaaagcgctgtcccatgtttct
gaaaagtcgtgctgttgcactctctgcaagtgcattggcgacaaaggtgcagttggaacc
tatgggacagcaggacagaaggggcgtgtaggtttgaaaggcctccccggacacgctgga
gaagaaggagcacccggcgaccgagggatcccaggacccgagggggaacaaggcgtcccc
ggctgtgtgggaacaaaaggcccaaagggcacacgggggatgcacggaacgaagggggac
actggcgatggagggattgacggagtacgcagtgagcagggggcccgtggttctcctgga
aacaaaggggctagaggagatccaggctatcagggatatccaggaataagggggacccca
ggagaccgcggtgagaagggattccgtggagatccaggtgaatcgggagctgataaagtt
gaaggtggtcctcgtggggaaaaaggcgacgaaggagagaagggggactttggaccacat
ggaccaccaggatcaccaggatccaaagggaaatcaaaggtggaaggtcggaagggaatc
ctggggccaaagggatcaaatggagcgcccggtttttctggtgatccaggggcacaagga
atcccaggaccagagggcaatgaaggagtccgcggtgaaactggaacaaagggaacccaa
ggtcttaagggcgttccgggtgccttcggaccagagggtgtgcccggaatcagtggtgct
cctgggccacgaggcaggaagggcttgcctggagattctggtaagaaaggagaacctgga
caggatggctggcatggacatgtgggagaagatggccgagatgggtacggtgcaccaggt
cgcaaaggtggcaagggccaaaaaggattcccaggatacaacggaccaaagggtgatcgt
ggtgattctggccttcctggggatgctggagcgagaggcagtagaggaaaagagagcaca
gccagtattcccggggatgccggatggccaggggcgcgaggccctcccggaaggatgggg
gcaaaaggagcaaagggccaggcacaatcatcaccatgtgatctcatcgagtttattcga
actaaatgccgtaagtatgttcttctgaatgcacgtatttaccatcaatttctacacgct
ttggcaatgccaataaatctgcctctcaacgaatatcttgcttcagcaacatctttattt
tacatcacccaacatacaggttttttctttacaggtaaaccggcctgccctgtgtaccct
acagagttggtgtttgcattagacatgtctaaagacgtcacagcggatgtgtttcggaag
atgaaagaaattctgctttcagttgtgagctcgctcaacatcagagagagcaactgtccc
actggagcccgggtagcaattttgtcttacaactacaacaacaagtacctggtgcgccct
tctgacatccgcagtaagagtcagcttctcaccgctgtgacggggataccatttgagagg
tcttctagtgggcggaacattgggcggatcatgagatttgtggctcggaatgtcttcaag
cggaccctccaaggtgccaacgtgagaaaagtggcagtgtttttcagcaacgggcagtcg
gaggatgctccgtctatccagacagctgtcatggagtttagtgcccttgacattgttcct
gtggtgattgcctttaacagtgtaccacatgttcaagaagctttcaagttggacaccact
gggatgtttcagatactgacgcatagagccagagatgaactggagccactgataagaaga
ctacagcaatgcacactgtgctatgacagatgtaaaaaagaacccctgtgtcagcaggat
attgacccaccaccgaagttaggtaccgatgctgtgttccttttggacagtttccagaac
gtggtagaggaccagtggttggaagccaaagatctccttattacactgatagataacttt
gacattgccaagcagccaaagacagcaggtgctggggatcgagtagcactggtgaggctc
gctgcccaaggaaacgccaccagtaggccttggaatccacaagtagaatttgatttaata
tcctacgtaaacaaaaatcgaatgaagagacatattcaagactcagtccttcagctcagt
ggtcctactgttgttggccaaactctgaagtgggcaattgataacatgttgtcaaaggtt
ccccacccaagaaagagcaagatcctttttgtgatatcggctggtgagtcaagtcagtgg
gacaagcacactctgaaggaggcatccttgaaagccaaatgccagggtttcgcaatattt
gtgatttcaatggggccgcactttaatagggctgagcttgaaggtctagccagtcatcct
gtggatcatcacctggttcagcttggacgacttcataaaccagactttcagtatgcatct
ggttttcttaaaccctttgtgattgcactaaaacgtggaatcaacaaatacccaccagca
catctcaggacgcaatgtgaaaggacccgattttga
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integrated database retrieval system
