Pleurodeles waltl (Iberian ribbed newt): 138267144
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Entry
138267144 CDS
T10800
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138267144 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138267144 (CNOT1)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138267144 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138267144 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
138267144
NCBI-ProteinID:
XP_069072099
LinkDB
All DBs
Position
12:complement(523336311..524514287)
Genome browser
AA seq
2837 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVTQHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECTSLITKPNFISTLSYAIDNPLHYQKSIKPSPHLFTQLSKVLK
LSKVQEVIFGLALLSSSSSELRAFAGQFIKQKLPDLLRSYIDADVGGNQEGGFQDIAIEV
LHLLLSHLLYGQKGTFGVGLEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDVLMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIVQFGVREVTAVQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVVKELNPSLNFKEVTYE
LDHPGFLMRDSKGLQIVVYGIQRGLGMDVFPVDLIYRPWKHAEGQLSFIQHSLLNPEIFC
FADYPFHSVSIDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEPVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISNLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLTSEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPLAAMASL
SIGSSTAPHTQSLPAFPPNLGSAFSTPQSPAKAFPPLSTQSQGTGFSGIGNLSTQLPGGL
GTGSLGGMGTGGLGLPAVNSDPFGQRKLSTSGLNQPTFQQSHRHSSSSTRDYSPTLSDSP
SPRVSPIDDVNTFQEVLVHVATKLNILLAVPAPTTSVIFKTLHQRTSSRPLLPLFPGLLE
PAMDIFLTPATTKTAPSRLIKKYRPPEQDPLFLRSDPVPDSVVIVAAEKLPSTSPSSSSP
PDKESRKIDAASRKVCSTAAITMKAASATALLGRYDRALWDSVLQFAEHLPKEKRFFGDH
DWLIKVSTYLEAQQHFNWSQQLLQSLGLQVNLLKSTATPVQRLHYLGASIDTKQGKVFPS
EERWLSILQKCQQLENTSDHCKSDILSPGLDSVLHPPHSQCSPSYETLTGMSGGSMVSTS
GRLGEQSPSFSPPLTIPPVVGIPFQQQPPAQTIVTDTSLLGWGAHMDHLRVQGKWSQIER
LYHINLLGLRAVHLALKAFLPSLKTETLLFQTDNVATMYYLNKQGGTRSRTLLTEAQTIW
HWLLVRNLSLVATHLPGIQNVQADALSRAIDENHEWVLHDNFCLQVLEMLQRFKDSTIKR
EREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALR
KPFASKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPV
KMQGSITTPGSIALAQAQAQAQVPAKASLAGQVSTIVTISTTTTTAKTITITRPTGVSFK
KDVPPSINTTNIDTLLVATDQTERIMEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVK
EEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNLEFNKMVLNETYRNIKVLLTSDKAA
ANFSDRSLLKNLGHWLGIITLAKNKPILHTDLDVKSLLLEAYLKGQQELLYVVPFIAKVL
ESSVRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLL
KDKDRLKSLDEQLSVPKKDVKLLEDVPPITSANEYAIRTAGKLWASVEKQESDAVFTATA
TVPATSTTCTTTVPPQPQYSYHDINIYSLGGLAPHIALNPTIPLFQTHPQLKQCVRQAIE
RAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCR
EPLLISIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCELACCFIQKTAVEKAGPE
MDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARN
VPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCITELEQNLHAIPTTLAMNPQVQA
LRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADPLRYRECHLLVLKALQDGR
AYGSPWCNKQITRCLIECRDEYKYSVEAVELLIRNHLVNMPQYDLHLAQSMENGLNYMAV
AFAMQLVKLLLVDERSVGHVTEADLFHTIETLMRINAHSRVNAPEGLPQLMDLLRSNYEA
MIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAF
VGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAF
VRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDARQTEFQQLPYHRIFIMLLL
ELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQK
GWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCD
VIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMQPQFKKD
LDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSM
STITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEA
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQC
CMGQKQAQQVMEGTGAS
NT seq
8514 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactaccgagcaagccaacaagaaatacagcatattgttacacagcacggc
cctgaggcagacaggcatttactacgctgtctattctcacatgtggacttcagtggcgat
ggtaaaagcagcggcaaagattttcatcagacacaatttctaattcaggagtgtacatca
ttaattacaaagccaaactttatttcaacattgtcttacgccattgacaatccattgcac
tatcaaaagagtattaagccttctccccatctatttacccagctcagtaaagttcttaag
ttgagcaaagtgcaagaggttatttttggtcttgctttgttgagttcatccagctcagaa
cttcgagccttcgctgggcagttcataaagcagaagcttccagacctcttgcgatcctac
atcgacgcagacgttggtggaaatcaagaaggtggctttcaagatattgcaatagaggtc
ttacacctcctgctctcccatctcctttacggccagaagggaacctttggcgtaggactg
gaacagattgacgctttccttaagacgttgcgccgtgattttccccaggagcgttgtcct
gtggtgcttgcaccactcctatatcctgaaaaacgggacgtactaatggacagaatcctg
cctgactccggagggattgccaaaaccatgatggagagctctctggcagactttatgcaa
gaagtgggctatggtttttgtgcaagtgtggaagaatgtcggaatatcattgttcagttt
ggtgttcgggaagtcacagctgtgcaggttgccagggttctaggaatgatggctcgaact
cactctggacttactgatggcattccattacagtccatttcagctcctggcagtggaatc
tggagtgatggaaaggacaaaagtgatggcacccaagctcacacctggaatgtggaagtc
ttaattgatgttgtgaaagaattgaatcccagcttgaactttaaagaagtaacatatgaa
ctggatcatccagggtttttaatgcgggacagcaaaggacttcagattgtggtttatggc
atccaaagaggcttgggcatggatgtgttcccagttgatttgatatatcggccttggaaa
catgcggaaggccagttgtctttcattcagcattcccttctaaatcctgaaatcttctgt
tttgcggactatcctttccactctgtttcaatcgacatcctgaaagcacctccagaggat
gataatcgggaaattgccacttggaaaagtttggacttgatagagtctctcctgcggctg
gctgaggttggccagtatgagccggtcaagcaactcttcagctttcccatcaaacattgc
ccagatatgctggtgttggccttactacagattaacacttcttggcacactttgcggcat
gaactcatctctaatttgatgccaattttccttggcaaccaccccaactcagccataatt
ttgcactatgcttggcatggacagggacaatctccttcaatccggcaactgatcatgcat
gccatggctgaatggtatatgcgaggggaacaatatgaccaggcaaagctctcacgaatt
ctagatgtggcccaggatttgaaggccttgtcaatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaggcctgcatgactttttta
aagagaaggtgtccttctattctcggtggccttacctctgaaaaagaccaacctaaaagt
gctcagctgcctcctgaaacacttgcgaccatgttggcatgcttacaggcatgtgcaggg
agcgtttcacaggagttgtcagagaccatcctcactatggttgcgaattgcagtaacgtg
atgaacaaagccaggcagccacctcctggagtcatgcccaaaggccgtccacccagtacg
agtagcttggatgccatttctcctgtacagattgatcctcttgcagcgatggcatctctc
agcattggaagctctactgccccccacacccagagcttaccagccttccctcccaatctg
ggctctgcttttagtaccccccagtcaccagcaaaagccttcccacctctctccacacaa
agtcagggtacaggtttcagtggtattggaaacctgtccacacaacttccaggtggcctt
ggaactggaagccttggtggaatgggcacaggtggccttggactccctgcagtgaacagt
gatccttttggacagaggaaactgagcacgtcaggacttaaccagcctaccttccagcag
agtcatagacattcctcttcttccacaagggattactctccaaccctatctgactcaccg
tctccaagagtttctcccatagacgacgtgaacaccttccaagaggtcctagtgcacgtt
gctaccaaattaaacatcctgctggcggtacccgctccaacgacctcggtgattttcaaa
acattacatcagaggacatcctcaagaccattactaccactgttcccgggtcttcttgaa
ccggcaatggatatatttttaacaccggccacaactaaaactgctccttccaggcttata
aagaagtatcgcccaccggagcaggaccctctattcctaaggtcggatccagtgcctgac
tctgtggttatagtggctgcagaaaagttgccctctacttctccgtcttcgtcctcacca
ccggacaaggagagtagaaagatcgatgccgcaagtcgtaaagtatgctctaccgcagcc
atcacaatgaaagcagccagtgctactgcgctattaggcagatatgatcgtgctctttgg
gactctgtactacagtttgcggagcatctacctaaagagaaaagattttttggagatcac
gattggctcataaaagtctccacctatctagaggctcaacagcatttcaactggtctcag
cagcttctccagagcctgggccttcaagtcaatcttctcaagtccacagcaacacctgtt
cagaggctgcattacttaggtgccagcatagataccaaacaaggaaaggtatttccttcg
gaggaacgatggttatcaattctccaaaaatgccagcagctcgagaacacctcagaccac
tgcaagagcgatatcctctctcctgggctcgatagcgtcttgcatccacctcattcccaa
tgctcgccttcttatgagacccttacaggaatgtctggaggatcaatggtgtcaactagt
ggacgattgggagagcagagtccttctttctccccaccccttacaatccctccagtggtg
gggattccattccagcaacaacctccagctcaaaccatcgtaacagacacatcgctgctc
ggatggggagcgcatatggatcaccttagagtccaaggcaagtggtcacagatagagcgt
ctgtatcatatcaacctgttggggcttcgcgcagtccatcttgcgctcaaggccttcctc
ccatctctgaagacggaaactctgctcttccagactgacaacgtggccaccatgtattac
ttaaacaaacaaggaggcaccaggtccaggaccctattgacagaggctcaaacaatctgg
cactggcttctagtccggaacctgtcgctagtggcaactcaccttccgggcatacagaat
gttcaagcggatgccctcagccgcgcaatagacgagaaccacgaatgggttttgcacgac
aacttttgtttgcaggtgttagaaatgctgcagaggtttaaagactccaccattaaacgc
gagcgagaggtgtttaactgtatgctaaggaacttgtttgaggagtaccgctttttcccc
cagtacccagacaaggagctgcacataacagcctgtctctttggcgggatcatagagaaa
ggactggttacatacatggcattgggccttgccctacgctatgtccttgaagccttacgc
aagccttttgcctccaaaatgtattattttggcattgctgcactagatagatttaaaaat
agattgaaggactatccccagtattgtcagcacttggcttctattagtcactttatacag
ttccctcatcacctacaagagtatatagagtatggtcagcagtctcgagatcctccagtg
aagatgcagggttccatcactactccaggaagtattgcacttgctcaggctcaggcccaa
gcccaagttccagccaaagcttctcttgcaggtcaagtgagcacgattgtcaccatctca
accactaccaccactgcaaaaactattaccatcaccaggcctacaggtgtcagctttaaa
aaggatgtacctccatcaataaacaccaccaacatagatacccttcttgtggcaactgat
cagacagagcgaatcatggagccccctgaaaatgtgcaagagaagattgcattcattttc
aacaacttgtctcagtccaacatgacacagaaggttgaagaactgaaggaaacagtaaag
gaagagttcatgccatgggtttcccagtaccttgtgatgaagcgagtcagtattgagcca
aatttccatagtctgtattcaaacttcttggacaccctgaagaaccttgagtttaacaag
atggtgcttaatgagacttacaggaacattaaggtactacttacatcggataaagctgca
gcaaacttctctgatcgatccctactgaaaaacctgggccattggcttggaataataacc
ttagccaagaataaaccaattctccatacggacctggatgttaagtccttgctccttgaa
gcctacctgaagggacaacaggaactgctgtatgtggtgccattcattgcaaaagtgttg
gagtccagtgtcaggagtgtggttttccgaccacccaatccatggacaatggcaatcatg
aatgtccttgctgagctgcatcaagaacatgaccttaaactcaatctaaagtttgagata
gaggttctctgtaagaacctgtctttggatatcaatgacttaaaaccaggcaatctcttg
aaggacaaagaccgtctcaagagtctggatgaacagctttctgtccccaaaaaagatgta
aagctccttgaggacgttccgccgattacctctgccaacgagtatgcaatccgtactgct
gggaagttgtgggcttctgtagagaagcaagagtctgatgcagtgtttacagctactgct
acggttccagcgaccagcaccacatgtactactacagttccccctcagccgcagtatagt
tatcacgatattaacatttattcactgggaggtctggccccacacattgcactcaaccca
acaattcccttgtttcaaacccacccacagttgaagcaatgtgttcgtcaggcgattgag
cgtgctgtgcaagagcttgtccatccagttgtagacagatccatcaaaattgccatgacc
acctgtgagcagatagtccgaaaagactttgcactggattctgaagagtcacgcatgcgg
gttgctgcccatcacatgatgcgaaatctgactgctggcatggctatgattacttgccga
gagcctctgcttatcagcatagccaccaacctgaagaacagctttgccactgctctgcgg
gcagcttccccacagcagcgggaaatgatggagcaggcagctgcacagcttgctcaagac
aactgtgagttggcatgctgttttatccagaagactgcagtcgagaaggcaggcccagaa
atggacaagcgattagctacagagtttgagttgaggaagcatgcgaggcaagaggggcgt
cgatattgtgatcctgtggtattaacgtaccaggctgagcgcatgcccgaacagatcagg
ctcaaggttggcggtgtagacccaaaacagctggctgtttacgaagagtttgcacgcaat
gtccctgggttcttacctaccaatgacctcacacaacctactggctttttagcgcagcct
atgaagcaagcttgggcaacagacgatgttgcgcagatctatgacaaatgcatcacagag
ttggagcagaaccttcatgcaatccctaccaccttggctatgaatcctcaagtgcaggct
cttcgtagtttgcttgaagcagttgtggtagcacgtaattcccgtgatgccattgcagcc
ctaggcttattacagaaggctgtggaagggttattggatgcaaccagtggagcagatgca
gaccctctccggtaccgtgagtgccatctacttgtattgaaggccctgcaggatggcagg
gcatatgggtcaccgtggtgcaacaagcaaattacccgttgtctaattgagtgcagagat
gagtataagtacagtgttgaagcggtggagcttttgatccgaaatcacctggtaaacatg
ccacagtatgaccttcacttggcccagtccatggaaaatggcttgaattacatggctgtt
gcatttgcaatgcaactggtaaagctacttttggtagacgagagaagcgttggccatgtt
actgaagctgatctctttcacaccattgaaaccttaatgaggatcaacgcacattccaga
gtcaacgctcctgaagggcttccacagctgatggacctgctccgatcaaactatgaagca
atgattgatcgagcgcatggtggccctaatttcatgatgcattctgggatttcacaggca
tcggaatatgatgatcctccaggactccgagaaaaagcagagtacctcttgcgagagtgg
gttaatctttaccattcagctgcagctggccgagacagcaccaaagctttctctgcgttt
gttggacagatgcaccagcaaggcattttaaagactgatgatctcatcacaagattcttc
cgtctctgtactgaaatgtgtgtggaaataagctaccgtgctcaggcagagcagcagcac
aacccagcagccaaccccaccatgatccgagccaagtgttaccacaacctagatgccttt
gtacgccttattgctctacttgtaaagcactctggagaggccaccaatacagtcacaaag
ataaacttactaaacaaggttcttggaatcgtggttggggttctcctccaagatcatgat
gcaagacaaacagagttccagcaactcccttaccatcgaatattcatcatgcttctgttg
gaactgaatgccccagagcatgtgctggagaccatcaacttccagaccttgaccgctttt
tgcaacaccttccatattttgaggcctactaaagcacctggttttgtgtacgcttggctg
gagctcatctcccatcggatattcattgcaagaatgcttgcacatacgccacaacagaag
ggttggccaatgtatgctcaactgttgattgacctcttcaagtacttggcgcctttttta
aggaatgttgaactcaccaaacccatgcagattctctataagggcacgcttcgtgtgttg
cttgtcttgttgcatgactttccagaatttctgtgtgattaccactatggcttctgcgat
gtcatccctccaaactgcatccagctgaggaacttaattctgagtgccttcccacggaac
atgaggctgccagatcctttcacacccaacctaaaggtggatatgctgagtgagataaac
attgctccgagaatcctcacaaacttcactggagtgatgcagcctcagttcaagaaggat
ttggattcgtacctgaagacccgctcaccagttaccttcctatcagagctccgcagcaac
ctacaggtatccaacgagccaggaaatcggtacaacatccagctgataaatgcattagta
ctgtatgtgggcacgcaggccattgctcacatacacaacaagggtagtacaccatccatg
agcaccatcacccactctgcccacatggacatctttcagaacctggctgttgacctggac
acagagggtcgttatttgtttttgaatgctattgccaatcaactgcggtatcccaatagc
cacacacactacttcagctgtaccatgctgtacctttttgcagaggcaaacacagaagct
attcaggagcagattacaagggttctactggagcgattaatagtaaaccgtccgcatccc
tggggtcttttaatcactttcattgagttgattaaaaatccagcttttaaattttggaat
cacgaatttgtccactgtgccccagaaattgaaaagttgtttcagtctgttgcacagtgt
tgcatggggcagaagcaagctcaacaagtgatggaaggtactggggccagttaa
DBGET
integrated database retrieval system
