Pleurodeles waltl (Iberian ribbed newt): 138284349
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Entry
138284349 CDS
T10800
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pwl03009
]
138284349 (IGHMBP2)
03012 Translation factors [BR:
pwl03012
]
138284349 (IGHMBP2)
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138284349 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
138284349 (IGHMBP2)
Ribosome biogenesis [BR:
pwl03009
]
Eukaryotic type
Other ribosome biogenesis factors
138284349 (IGHMBP2)
Translation factors [BR:
pwl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
138284349 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
NAT10_TcmA_helicase
zf-AN1
Viral_helicase1
AAA_16
ResIII
DEAD
SLFN-g3_helicase
AAA_22
nSTAND3
UvrD-helicase
Flavi_DEAD
AAA
nSTAND_NTPase5
IstB_IS21
T2SSE
Zot
APS_kinase
DnaB_C
CbiA
NTPase_1
AAA_18
AAA_25
cobW
Herpes_ori_bp
ABC_tran
NPHP3_N
AAA_31
AAA_33
Motif
Other DBs
NCBI-GeneID:
138284349
NCBI-ProteinID:
XP_069079125
LinkDB
All DBs
Position
3_1:complement(581834078..582053273)
Genome browser
AA seq
1000 aa
AA seq
DB search
MATMENFVKTNLALLQEEREAEIQETRQWQESVSLKELQRRGVCLLKLQVTNQRTGLYGR
LLVTFQPRKFDAEAVLPSNNFGPGDIVGLYEASGGKEPLATGIVTRVTQKSLTAAFDETH
DGALSVDRENAYCLLKLANDVTYKRIKQALNLLSQYHSGPAVNLIDVLFGQSEPSPPTDA
KPLEFHNKSLDDSQKEAVSFSLCQRELAIVHGPPGTGKTTTVVEIITQAVKQGLKVLCCA
PSNVAVDNLVERLAERKEKILRLGHPARLLASIQSHSLDAVLAKSDNAHIVADIRKDIDS
AFTQAKKTRDKGERSHLRTEIKTLRKELRAREESAMIDILTRADVILATNTGASNDGPLK
LLPENHFDIVVVDECAQALEASCWIPLLKAKKCVLAGDHKQLPPTIISHNAAAKGLSLSL
MERLLEKYGEKIVKMLTVQYRMHQSIMQWASDELYGGCLNAHSSVAKHLLKDLPGVVLTE
ETSIPLLLIDTAGCGLLELNEENEQSIGNQGEVRLVGLHLQALVDAGVKARDIAVIAPYN
LQVDMLRQHLSHQHPELEIKSVDGFQGREKEAVLLSFVRSNKKGDVGFLSEDRRINVAIT
RARRHLAIICDSRTISSHKFLKTLVNYMTENGEVRTAFEYLDDIVPENYSLPLSASEQAD
SLKTIPVHSKDKLKEPRQGSQKSKGFEKVHRTPSTQKPKHINSFSTQNESDTTLENMKEG
SSMKDNCSELNRMITEFLKDTSKLHLDFPSNLNSHDRLLVHQLAETHGLDHVSTGEGKER
YITVRKTNVALAFNQPPAILHEQKTSPAVSPKGEDVVSKVETNGNSPAKVLDLKTLHLER
MQREKAKREEKAEKLSDQNMQKSSLKKKNSDAKAKSTAKTGTSISPEDDFDALIAATIKA
DSTCGFPKCKASVLTVGQLCTHCRKHYCLSHHIPEVHGCGEKAKANARARISKEGVLYAG
SGHKDNSIDPAKKAHLQRRLDKKLNELTDQRKSKKKEKEK
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggccactatggagaactttgtgaaaaccaacttggccctactacaggaggagagggag
gctgagatacaagagactaggcagtggcaggaaagtgtctccttaaaagagctccagcgc
agaggagtctgtctgttaaaattgcaagtaaccaaccaacgaactgggctttacggtcga
ctattggtaacatttcaacctcggaaatttgatgcagaagcagtgctgccgagcaacaac
ttcgggcctggtgacattgttggtctttatgaagccagtggaggaaaggagccgcttgct
acaggaattgtgacaagagttactcagaaatctctaactgctgcttttgatgagacccac
gatggtgcactcagtgtggaccgtgagaatgcctactgcctgctgaagttagcaaatgat
gtcacctacaagaggataaaacaggctttgaacctattgagccaataccattctgggcca
gcagtgaatctgattgatgtgcttttcggccagtcggaaccaagtcccccaactgatgca
aagcctttggagtttcataacaaatccctggatgactctcaaaaggaggcggtttcattt
tctctttgccagcgagagcttgctatagtccatggtcctcccggtactggtaaaacaaca
acagtggtggaaataattactcaagctgtgaaacaagggttgaaggtgttatgctgtgct
ccttctaatgtggcggtggataatctggtggaacgtttagcagaacgtaaggaaaagatc
ctgcgtctgggtcacccagcccgcctgttggcatctatacagagtcattcattggatgca
gttttggcaaagagtgacaatgcacatattgtagctgatatcaggaaggatattgatagt
gcatttacacaggctaaaaagacaagggacaaaggcgaaaggagtcatcttcgaactgag
atcaagactctgagaaaagaactcagggcaagggaggaatccgccatgatcgacattctg
acgcgtgcagatgtaattcttgcaacaaacactggtgcttcgaatgatggtcctctaaag
ttacttccagaaaatcactttgatattgttgtggttgatgagtgtgcacaggcattggaa
gcaagctgctggatccctctgctgaaggccaaaaagtgtgttttggctggtgatcacaaa
cagctaccaccgaccataatttctcacaatgctgctgcaaaaggcctttctctgagttta
atggagcgtctacttgagaagtatggtgaaaagatagtaaagatgctgacagtgcagtac
cggatgcatcagtctataatgcaatgggcttctgacgaactgtatggtgggtgtttgaat
gcacactcatccgttgcaaaacatttgttaaaggatttacctggagttgttctaacagaa
gaaacttctattcctttgctgcttattgacacagcaggttgtggtcttttagaacttaat
gaggaaaatgaacagtccataggaaaccaaggtgaagttcggctcgttggtttacacctc
caggcattggtggatgctggtgttaaagctcgtgacattgctgtcattgcaccatacaat
cttcaggtcgacatgcttagacagcaccttagtcatcagcatccagaactagaaatcaag
tcagttgatggattccaaggaagagaaaaggaagctgttttgttgtcttttgtgcgttct
aacaaaaaaggtgatgtgggttttctgtcagaagatcgaaggataaatgttgccattact
cgtgcccgccgccacctagctataatctgtgattctcgaactatcagtagccacaagttt
ttaaaaactctggtgaattatatgactgaaaatggagaggttagaacagcttttgagtac
cttgatgatattgtgccagagaactattcacttcctctgagtgctagtgagcaggcagac
tctttaaagacaataccagttcactctaaagacaaattgaaagaaccacgccaagggagc
cagaaatctaaaggatttgagaaggtacatagaacaccctccactcagaaaccaaaacat
attaattctttttctacccaaaatgaaagtgacacgactttggaaaatatgaaggaaggc
tcttcaatgaaagacaattgcagtgaactgaaccgtatgatcactgaatttctgaaggac
acaagtaaattgcacttagactttccttcaaatttaaactctcacgacagattgttagtg
caccagctagctgaaacacacggactagaccacgtgagcacaggagaaggaaaagagcga
tatattactgtcagaaaaaccaatgtggcattggcattcaatcaacctcctgcaatatta
catgagcagaaaacatcacctgcagtaagtccaaagggtgaagatgtggtttcaaaggtg
gaaacaaatggaaactcccctgcaaaggtgcttgatctgaaaactttgcatttggaaaga
atgcagagagaaaaggcaaagcgtgaagaaaaggccgaaaaactcagtgatcaaaatatg
caaaaatcttcactgaagaagaaaaactctgacgcaaaagccaagagcactgccaaaacg
gggacttccatctctcctgaagatgattttgatgcactaatcgctgctacgattaaagct
gacagtacgtgtggattccctaaatgcaaagcaagtgttctgacagtgggacagctctgc
acacactgcagaaagcactactgcttgagtcaccatatcccagaggtgcatggctgcgga
gagaaagctaaagcaaatgctcgtgcaaggatcagcaaggaaggagttctttatgctgga
agcggacacaaagataactcaattgacccagcgaaaaaggcacacttacagagaagatta
gataaaaaacttaatgaacttacagaccaaagaaagagcaaaaagaaagaaaaagaaaaa
taa
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