Pleurodeles waltl (Iberian ribbed newt): 138285496
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Entry
138285496 CDS
T10800
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510
Focal adhesion
pwl04512
ECM-receptor interaction
pwl04518
Integrin signaling
pwl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138285496 (COL6A2)
04518 Integrin signaling
138285496 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138285496 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138285496 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pwl04147
]
138285496 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138285496 (COL6A2)
Exosome [BR:
pwl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138285496 (COL6A2)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138285496 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
138285496 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
138285496
NCBI-ProteinID:
XP_069081584
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All DBs
Position
3_1:1688679380..1688781837
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AA seq
1019 aa
AA seq
DB search
MAGKILFGLILCGMLGSLLAQLDSTDVARSPSCTEKTDCPIQVYFLIDTSESIILQTAPI
QSLLDNIKRFIPLFLDRMESEAYLNQVAITWQYAGLHYSDEVRVYSPMTSDKNDYLRRLK
DIQYIGRGTFTDCAISNMTSQILQSQRPDTKSVKYAVVITDGHVTGSPCGGIKHQADAAR
DAGIKSFAVAPSHDVYEQGLREIAYHPHELYRSNYAVTTSEDLLKIDEATIDKIIQVMKH
EAYAECYKMSCLEIPGPPGPAGYRGQKGAKGNAGEPGDLGDKGRQGDPGIEGPIGYPGPK
GGPGMKGEKGDYGSDGKKGAMGLAGRNGTDGQKGKLGRIGPPGCKGDPGNKGPDGYSGDV
GERGEDGDPGVKGDPGRSGRSGPPGPPGEKGNKGGLGNPGAPGIPGIKGGKGSPGTAGPK
GEVGRRGDPGPKGGPGVDGGKGEKGDPGSDGPRGLGGETGAKGSKGERGLPGPRGAQGPP
GEVGRNGSRGDPGDMGERGNPGPPGPKGDRGRPGFSYPGSRGPPGDNGEKGPPGPQGGRG
DFGPKGGPGPKGEKGLPGDPGPGGEPGPRGVQGDPGPEGNPGPPGDPGLTDCDVMTYVRE
TCGCCDCEKRCGPLDIVFIIDSSESIGYTNFSLEKNFVINVVSRLGSMAKDPKSETGARV
GVVQYSHEGTFEAIQLNDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNTLIKETKR
DKAKVFAVVLTDGRHDPRDPDAGLNALCQGDVIVNAIGIGDMFHKQQDDETLNSISCNDP
TRVRKMKLFSELVADEFIDNMEELLCPDPQIVCPDLPCQTELAVAQCTQRPVDIVFLLDG
SERIGELNFHRATDFVEEVARRLTLARRDDDSMNARIALLQYGSENEQVVVFPFSYNLTD
ISEALSEIKYLDSSSNIGSAIIYSINNIVLNQLQGVRRNTELSFVFITDGITGNKSLNEA
VTSMRKQDVMPTIVAIGDDLDMDILMQIGLGDRTAIFREKDYSQLSHPSFFDRFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggctgggaaaatcttatttggcctcatcctttgtggaatgctggggtccctgctcgct
cagctggactccacagatgtggcacgctctccttcttgtacagaaaaaactgactgccct
atccaagtttacttcttgattgacacgtcggagagcattattcttcagacagcgccaatc
cagagcctgctggacaacatcaagcgatttatccccctctttttggacagaatggagagt
gaggcatacctgaaccaggtggctatcacttggcagtatgctggcctccattactcagat
gaagtgagggtgtacagcccaatgacctctgataagaacgactacctcagaagactcaag
gacattcagtacataggccgtggaacattcacagactgcgcaatctccaacatgaccagt
cagatactgcagagtcagagaccagacaccaaatctgtgaagtacgcagtagtcattacc
gatggccacgtgactggaagcccctgtggtggaataaagcatcaggcagacgcagctcgc
gatgctggtatcaagtcttttgctgtggcacccagtcatgatgtgtatgagcagggactg
cgtgagatagcttaccacccacatgagctttaccgcagcaactacgcagtcaccaccagc
gaggatctgctaaagatcgacgaggccaccattgataagatcatccaggtcatgaaacat
gaagcctatgcagagtgctacaagatgagctgcctggaaatcccaggacctcctggacca
gcggggtaccgaggacagaagggtgccaaaggtaacgcaggggagcctggcgatcttgga
gataaaggaaggcagggagatcccggtatagagggtcccattggatatcctggtcccaag
gggggtcctggtatgaaaggcgaaaagggagattacggaagcgatggcaaaaagggtgcc
atgggcttggctggaagaaatggaaccgatgggcagaaggggaaactgggacgaattgga
ccacctggttgtaaaggagacccaggaaacaagggtcctgatggatactcaggtgatgtg
ggagagagaggagaagacggtgaccccggagtaaagggagatcctggtcgctcagggcga
agcggacctccaggaccaccaggagaaaagggaaataagggtggtttggggaaccctgga
gctcctggaattcctggcatcaaaggaggaaaaggttctcctggcaccgctggacccaaa
ggagaagtgggccgacgaggtgacccaggtccaaagggaggcccaggagtagatggcggc
aaaggagaaaagggagaccccggcagtgacggaccccgtggtttaggaggagagactgga
gccaaaggatccaagggagaacgaggattgcctggtcctagaggtgcccagggtccacct
ggggaggtcggaagaaatggatctcgtggggatccaggcgatatgggagaacgaggaaat
cctggaccaccaggacctaagggtgatcgtggcagaccaggcttcagttaccctggctcc
agaggaccacctggagataatggcgagaaaggtccgccaggcccacagggtggtagaggt
gactttggaccaaagggaggtcccggccctaagggagaaaagggtttgccgggggatcca
ggaccaggaggagagccggggcccaggggtgtacagggagatcctggacctgagggaaat
ccgggacctccaggtgacccaggactaacggactgtgacgtgatgacatatgtgagagaa
acctgtggctgctgcgactgcgagaagaggtgtggtcctctggacattgttttcatcatt
gacagctcagaaagtattggttacacaaacttctctctggaaaagaactttgtcatcaac
gtagtcagcagactcggatccatggctaaagaccccaagtctgaaacaggtgcccgcgtt
ggagtggtacagtacagtcatgaaggtacctttgaggcaattcaactcaatgatgaacgt
attgattcactctccagcttcaaggaagcagtaaagcgtcttgaatggattgctggtggc
acctggacaccctctgcactgcaatttgcctacaacacgctcatcaaggaaaccaagaga
gacaaagccaaggtgttcgctgtggtcctcactgatgggcggcatgaccctcgtgaccct
gatgctgggttgaatgcactctgccagggtgatgtaattgtcaatgccatcggcattggg
gacatgttccacaaacagcaagatgatgagactctgaactccatctcctgcaacgacccc
acacgagtccgaaagatgaagctattttctgagcttgtagcagacgagttcattgacaac
atggaggagctgctgtgcccagatcctcagattgtctgcccggatctcccatgccaaaca
gaacttgctgtggctcagtgtacccagcggccagtggacatcgtttttctgctggatgga
tcagagaggatcggagagctgaacttccacagggcaactgattttgtggaagaggtagcc
cgacgcctgaccctagcacggcgcgatgatgacagcatgaatgcacgcattgcccttctg
cagtatggcagtgaaaatgagcaagtggtggtcttcccgttctcctacaacctgaccgac
atctcagaggcactgtctgagatcaaataccttgactcatcttccaacattggttcagcc
atcatctactccatcaacaatatagttctgaaccagctgcagggagtgcgacgtaacact
gagctctccttcgtcttcattaccgatggcatcactgggaacaagagcctgaatgaggct
gtaacctctatgaggaagcaggatgtcatgcccacaattgtggccatcggtgatgatctg
gatatggacatcctcatgcagattggccttggcgacaggacggccatcttcagggagaag
gattacagccagctgtcccaccccagcttcttcgaccgcttcatcagatggatctgttag
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