Paenibacillus woosongensis: QNH46_21585
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Entry
QNH46_21585 CDS
T09437
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pwn
Paenibacillus woosongensis
Pathway
pwn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pwn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QNH46_21585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwn03021
]
QNH46_21585 (rpoC)
03400 DNA repair and recombination proteins [BR:
pwn03400
]
QNH46_21585 (rpoC)
Enzymes [BR:
pwn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QNH46_21585 (rpoC)
Transcription machinery [BR:
pwn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QNH46_21585 (rpoC)
DNA repair and recombination proteins [BR:
pwn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QNH46_21585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WHX48616
UniProt:
A0AA95I4B7
LinkDB
All DBs
Position
complement(4643098..4646712)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNEPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEAKGSGMILGSTHEAVSAYQRGTVSLHARVAIP
AKALGKTGFTEAQQNALLVTTVGRIIFNEIFPASFPYINEPSRSNLFQGTPDHYFIYDKG
ANVFERIMAVPQTGGIGKEYLGEIIGRCFEIYHTTETSVILDKIKQTGFTYSTRAGVSIA
VSDVVVPDAKQEILRESDEKVRVVTNQYRRGLITNEERYDRVIDIWSKSKDQITDVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVGVIQDGKEVIEDL
YDRIEGRYSFETIKHPETGEIIVHRNELIDSDKAHEVVDAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIREAKDRREIEVQGEAETKVYSVTYGSRLRVSEGQEIEA
GDELTDGSIDPKEILRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
VDAGDTPLLPGAFVDLYEYEMANKEAILSGQEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRSVQFEEPENAEAEEGQEQP
VTVE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaacttcgagtttatgaaaattgggcttgcttccccagacaaaatt
cgttcttggtcccgcggagaagtgaagaaaccggaaacgatcaactaccgtacgttaaag
ccggaaaaggaagggctgttctgcgagaaaatcttcggcccgaccaaagactgggaatgt
cattgcggtaagtataagcgtgtccgttataaaggcgtcgtctgcgatcgctgcggcgtc
gaagtaactagagctaaagttcgccgtgaacgcatgggtcacattgagctggccgccccg
gtctcccatatttggtactttaaagggattccaagccggatgggtctggcgctcgatatg
tcgcctcgttcattggaggagattatttactttgcatcttatgttgttaccgatccaggc
gagacgccgctggagaaaaaacagctcctgtcagagaaggaataccgcagctaccgtgaa
aaatacggctatggcttccaagccggcatgggcgctgaagcggttaagaagctgctccag
gatctcgatatcgacaaagagcttgaatttctgaaagaagagcttcgcaccgctcaaggc
caacgccgcaaccgtgcgatcaaacgtctggaagtcatcgaagccttccggaattccggc
aacgaaccggaatggatgatcctcgacgtgcttccagttattccgccagagcttcgtccg
atggtacagctggatggcggccgttttgcgacgtctgacctgaatgacttgtatcgccgc
gttattaaccgcaacaaccgtttgaaacgtctgctcgatctcggtgcgccggatattatc
gtgcagaacgagaagcgcatgctgcaggaagcggttgacgccttgatcgataacggccgc
cgcggccgtccggtgacgggccctggtaaccgtccgctcaaatccctcagccacatgctg
aaagggaagcaaggacgcttccgtcaaaacctgctcggaaaacgggttgactactccggt
cgttccgttatcgtcgtaggtccttacttgaagatgtaccaatgcggtctgccgaaggaa
atggcgctggaactgtttaagccgttcgtgatgaaggaactggtcaacaaaggcctggct
cacaacatcaagagcgcgaaacgtaaagttgaacgcgtcagcccagaggtatgggacgtg
cttgaagaagtcattaaagagcatccggttctgcttaaccgtgctcctacgcttcaccga
ttgggaattcaggcgttcgagccgattctggtcgaaggccgcgcgatccgtctgcacccg
ctcgtatgtactgcatataacgcggactttgacggtgaccaaatggctgtgcacgtaccg
ctcagcgcagaagcgcaagcggaagcccggattctgatgcttgcttccggcaacatcctg
aacccgaaagacggtaaaccggttgttactccttcacaggatatggttctgggctccttc
tatctgacgatggacaacaaggaagctaagggatcaggaatgattctcgggtccactcac
gaagcagtttccgcttatcagcggggaacggtatctctgcatgcgcgtgtagccatcccg
gctaaagcgcttggtaaaacaggatttaccgaagctcagcaaaatgcgctgcttgtgacg
acggttggccggattattttcaatgaaattttcccagccagcttcccgtacattaatgag
ccttcgcgcagcaacctgttccaaggaacgccggatcattactttatttatgacaaaggc
gccaacgtatttgaacgcattatggcagtgccgcaaaccgggggaatcggcaaagagtac
cttggagaaattatcggccgctgcttcgaaatataccatacgacggaaacgtcggttatt
ctcgataaaatcaagcaaaccggcttcacctactctactcgtgcaggcgttagtattgct
gtctccgacgttgtcgttccggatgccaagcaagagatcctgcgagagtcggatgagaag
gttcgcgttgttacgaatcagtaccgccgtggtctgattacgaacgaagagcgttacgac
cgggttatcgacatctggtccaaatcgaaagaccaaattaccgacgtgctcatgaaatcg
atggatcgcttcaattccatcatgctcatggtcgattccaaggcgcggggtaacaaatcg
cagattacgcagcttggcggtatgcgggggctgatggccaacccgtccggtcggatcatc
gagctcccaatcaagtcgaacttccgcgaaggcctcacggttctcgagtacttcctgtca
acgcacggtgcgcgtaaaggtctggcggataccgcgctgcggaccgctgactcgggttac
ctgacccgccgtctcgttgacgttgcgcaggacgttatcgtccgcgaggaagattgcggt
acggataaaggctttaccgtcggcgtcatccaggatggcaaagaggtcatcgaggatctg
tatgaccgtattgaaggacgttattccttcgagacgatcaagcatcctgagacaggggag
atcatcgttcatcgcaatgaactgatcgattctgataaagcgcatgaagttgtggacgca
ggcgttacgaagctgcaaatccgctccgtgttgagctgccgcgctcgccatggcgtatgt
aagaagtgctacgggcgcaacttggcgacaggcaaacatgtggagatcggtgaagcggtg
ggtatcatcgccgcacaatccatcggtgaaccgggaacccagctcacaatgcgtacgttc
cataccgggggcgttgcgggtgacgacattacccaaggtttgccgcgtatacaggagctg
ttcgaggcgcgtaacccgaaagggcaagccacgatcagtgaaatcgacggcgtaatcaaa
gaaatccgcgaagccaaagaccgccgggaaatcgaggttcaaggcgaagcggaaacgaag
gtctattccgtcacctacggatcccgcctgcgcgtcagcgaaggacaggaaatcgaagcg
ggcgatgagctgacagacggctccattgacccgaaagaaattctgcgcatcaaagggatt
cgtggtgttcagaactatattcttcaggaagttcagcgcgtataccgtaaccagggcgtt
gaaatcaacgataagcacatcgaggttatgatcaagcaaatgctgcgcaagatccgcatc
gttgatgctggggatacgcctcttctgccgggagcgttcgttgatctctatgaatatgag
atggcgaacaaggaagcgattctgtccggccaggagccggcggtcgccaaacctgttctc
cttggtatcacgaaggcgtcgcttgagacggattccttcctgtcggccgcttccttccag
gaaacgacccgggtacttaccgatgccgcgatcaaaggcaaagtagataaactgcttggc
ctgaaagagaacgtcattatcggtaagctgatccctgccggtacgggcatgaaccgctac
cgcagcgtacagttcgaagagccggagaatgccgaggctgaagaaggccaagagcagccg
gtaacggtcgaataa
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integrated database retrieval system
