Pseudomonas wenzhouensis: J7655_18400
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Entry
J7655_18400 CDS
T07852
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pwz
Pseudomonas wenzhouensis
Pathway
pwz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pwz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J7655_18400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwz03021
]
J7655_18400 (rpoB)
03400 DNA repair and recombination proteins [BR:
pwz03400
]
J7655_18400 (rpoB)
Enzymes [BR:
pwz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J7655_18400 (rpoB)
Transcription machinery [BR:
pwz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J7655_18400 (rpoB)
DNA repair and recombination proteins [BR:
pwz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J7655_18400 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UFQ97235
LinkDB
All DBs
Position
complement(3949355..3953428)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVFHVKGEG
LSLELVPQRLRGEVAVLDIKDASGKVIVEQGRRITARHINQLDKAGIKELEVPLDYVIGR
TTAKAIVHPATGEIIAECNTELTADLLVKMAKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGQVTDEIVFLSAIEEADHVIAQASATLNDKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
QVSRGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEISSDIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQQLDE
IRKDLNEEFRIVEGATFERLRSALVGAIAEGGAGLKKGTAITDEFLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLAEIYNEIGGRQENLDEFSDNEILELAKNLKGGVPMATA
VFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggat
gtcatggatgtgccttacctcctggccatccagctggattcctatcgcgaattcctgcag
caaggggtgagcaaggaacaattccgcgacatcggcctgcatgcggccttcaaatcggta
ttcccgatcatcagctactccggcaacgctgccctggagtacgtcggctatcgcctgggc
gagccggcgttcgacgtcaaggagtgcgtcctgcgtggcgtgaccttcgccgtgccgctg
cgcgtaaaagtacgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaggaagtgtacatgggcgaaattccgctcatgaccgagaacggtaccttc
gtcatcaacggtaccgagcgtgtgatcgtgtcccagctgcaccgttcgccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtactccgctcgcatc
attccttaccgcggttcctggctggacttcgagttcgacccgaaggacgcggtattcgtg
cgtatcgaccgtcgccgcaaactgccggcgtccgtcctgctgcgcgcactgggctacagc
actgaagaagtactggatgccttctacgacaccaacgtcttccatgttaagggcgaaggc
ctgagcctggagctggtaccgcagcgcctgcgtggtgaagtcgcggttctggatatcaag
gacgccagcggcaaggtgatcgtcgagcagggccgccgtatcaccgcccgccacatcaac
cagcttgacaaagctggcatcaaggagctggaagttccgctcgattacgtcattggccgt
accactgccaaggccatcgtgcacccggctaccggtgagatcatcgccgaatgcaacacc
gagctgactgccgacctgctggtcaagatggccaaggcacaggtggttcgcttcgagact
ctgtacaccaacgacatcgactgtggtccgttcatcagcgacaccctgaagatcgacagc
accaccaatcagctggaagcgctggtcgaaatctaccgcatgatgcgtcctggtgagccg
ccaaccaaggatgctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgtgggccgcatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggttcgggcgtgctgagcaaggaagacatcgttgccgtattgaagaccctggtcgacatc
cgtaacggcaagggcatcgtcgacgatatcgaccacctgggtaaccgtcgcgtgcgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgcgtcgagcgcgcggtc
aaggaacgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaggagttctttggttccagccagctgtcacaatttatg
gaccagaacaatccactgtctgaaattacgcacaaacgtcgtatctctgcattaggccca
ggtggtctgactcgtgagcgcgcgggcttcgaagtacgtgacgtacacccaactcactac
ggtcgtgtatgtccaatcgaaacgcctgaaggtccaaacatcggtctgatcaactcgctg
gctgcctacgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtcaag
gaaggtcaggtcaccgacgagatcgtattcctgtccgccatcgaagaagccgatcacgtg
atcgctcaggcgtccgcgaccctgaatgacaaaggtcagctgatcgacgaactggtcgcc
gtacgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtg
tcgccgaagcaggtcgtttccgtcgccgcctcgctgattccattccttgaacacgatgac
gccaaccgtgcattgatgggtgcgaacatgcaacgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtcggtaccggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtcgtggcccgtcgtggtggtgtgatcgactcggtcgacgccagccgcatcgtggttcgc
gtcaacgatgacgaagtcgaaactggcgaagctggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
caggtttcgcgtggcgacatcatggctgacggcccgtccaccgacatgggtgaactggcg
ctgggtcaaaacatgcgcgtggcattcatgccatggaatggttataacttcgaagactcc
atctgcctgtccgagcgcgtggttcaggaagaccgcttcaccaccatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagctcggcccagaggaaatctcctctgatatcccg
aacgtcggtgaagctgcgctttctaaactggatgaatccggtatcgtttatatcggtgca
gaagtgaaaggcggcgacattctggttggtaaagtaacaccgaaaggtgaaactcagtta
accccagaagagaaactgctgcgtgctatcttcggtgaaaaagcgtcagacgtgaaggac
acctccctgcgtgtgccgactggcaccaagggcaccgtcatcgacgtacaggtcttcacc
cgtgacggcgtcgagcgcgacagccgcgcgctggctatcgagaagcagcaactggacgag
atccgcaaggatctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgaacgtctg
cgttccgctctggttggtgccatcgccgaaggcggcgctggtctgaagaaaggcaccgcg
attaccgacgagttcctcgacggcctcgagcgtggtcagtggttcaagctgcgcatggcc
gacgacgccctgaacgagcagctggagaaggctcaggcctacatctccgaccgccgtcag
atgctcgacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggcg
ccgggcgtactgaagatcgtcaaggtctacctggccatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtcgtctcggtgatcatgccggtcgaa
gacatgccgcacgacgccaacggtactccggtcgacatcgtgctgaacccgctgggcgta
ccatcacgtatgaacatcggtcagatcctcgaaacccacctgggcctcgcggccaagggc
ctgggcgagaagatcaatcgcatgctcgaagagcagcgcaaggtcgctgaactgcgcaag
ttcctcgccgagatctacaacgagatcggcggtcgtcaggaaaacctcgacgagttctcc
gacaacgagatcctcgagctggcgaagaacctcaaaggcggtgtgccgatggcgactgcc
gtgttcgacggcgccaaggaaaccgagatcaaggccatgctgaagctggctgatctgccg
gagagcggccagatgcgcctgttcgacggtcgtaccggtaaccagttcgagcgtccgacc
accgtcggctatatgtacatgctgaaactgaaccacttggttgacgataagatgcacgcc
cgttcaacaggttcttacagcttggttactcagcaaccgctgggtggtaaagcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcactggaagcatacggtgcagcctat
actcttcaagaaatgcttacagttaaatcggatgacgttaacggccgtacgaagatgtat
aaaaacatcgtcgatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgta
ctgatcaaagagatccgttcgctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
