Pyrus x bretschneideri (Chinese white pear): 103927546
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Entry
103927546 CDS
T03446
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103927546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103927546
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103927546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_14
TPR_16
TPR_8
TPR_12
TPR_20
TPR_15
TPR_9
BTAD
TPR_7
TPR_10
Motif
Other DBs
NCBI-GeneID:
103927546
NCBI-ProteinID:
XP_009334757
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MQHTDPEKEGKLRRLQESVEAHPDDPSLRFQLGVLLWKXXDDKEKAAEQFLVAAKLKPEI
EKGGAFTYLGLYYAGLGSESHTQRALKCFQKAVSLNPDDSLSGEALCELLDQQGKESLEV
AVCREASQNSPRAFWAFQRLGYLQLHQNKCSDAVHSLQHAIRGYPTSAHLWEALGLAYQR
LGRFTAALKSYGRAIELEGTRIFALLESGNTFLMLGSYKKGVETFQQALEISPKSVSAHY
GLAAGMLGLAKECNNLGAYRWGATVLEEASKVAWMSTQLAGNLSSIWKLHGDIQLTYAKC
YPWMEEGDGLEFDMESFDNSILSWKHTCCLAAKTARCSYQRALHLAPWQANMYIDIAVTS
DLIDSLDNSSGHDLSAWQQSEKMALGALLLEGDNSEFWVALGCLSDHKALKQHALIRGLQ
LNVSLAVAWAYLGKLYRKQGEKQFARQSFDCARSIDPSLALPWAGMSADFHAGESAVGEA
YESCLRAAQILPLAEFQIGLAKLALASGNLSSSQVFEAIRQAMQRAPHYPECHNLNGLVS
EAQCNYQSAAVSYRLARRAITNLSGSDRKSHMTDISVNLARSLSKAGNALDALHECEDLK
KEGLLDVEGLQIYAFSLWQLGETNLALSVVRSLAVSVSTMEQKSAAAPVVFICRLLYYIS
GLDSAINSILKMPKQLFRSSKISFIVSAIHALDQSNRLQSIVSSTRDYLKSHEEITGMHF
LIALGKLVKHGSECCLGYQSGVNHLRKALHMYPNSSLLRNFLGYLLLSTEEWNDTHIATR
CCNVDTMNPIEGGLKSAYEILGAGAVACYAVGTCNPKFSYPTCTYQCLNEPGTIQQLQKC
LRREPWNQNIRYLLVLNLLQKAREERFPCHLCIILERLITVALSDEFYHNDDSSYEYKKF
QLLLCASEICLQGGNLTGCINHAKNASSIMLPDGYLFFAHLLLLRAYASEGNMVNLQKEY
IRCLQLKTDLHIGWICLKLMETRYEVQTDLDMLELSFRECPTESMNSRNMWGAIFSLVKG
LICIWNQDIVSAEEFLAQACSLAGAECSLLLCHGATCMELSRRGCASQFLSLAIRSLVKA
QEASLIPLPIVSALLAQAVASLGSKEKWEKNLRLEWPTWPPEMRPAELFFQMHLLAKQSK
ASPQSSSVEFCQSPQRWVLRAIHTNPSCMRYWTVLQKFVE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcaacacacggacccagaaaaggaagggaagctccgacggttgcaggagagcgtagag
gcccatccagatgacccctcccttcgcttccaactgggagtgttgttgtggaaaganngg
gatgacaaggagaaagcggcagagcagttcctagtcgccgcgaaattgaagcctgagatt
gaaaagggaggggcattcacatatctagggctttattacgcgggtcttggctccgagtcc
cacacccagagagctctcaagtgtttccaaaaagctgtctctctcaatcctgatgactcc
ctttctggggaagctttgtgtgagttgttggaccaacaaggaaaggagagcttggaggtg
gccgtgtgccgggaggcttcccaaaattcacccagggccttttgggcttttcagagactg
ggttacttgcagctccatcaaaacaaatgctctgatgctgtccacagtcttcaacatgcc
attcgaggctatcctacctccgcacatctctgggaggctcttggccttgcgtaccagcga
ctaggcaggttcactgctgctttaaagtcctatggaagagccatcgaattggagggtaca
agaatatttgcgttgcttgaaagcggaaacacctttttgatgcttggttcctataaaaag
ggagttgagacatttcagcaagctttagagatctcccccaaaagtgtctctgcacactat
gggcttgctgctgggatgcttggtttggccaaggaatgcaataatttgggagcatataga
tggggagctacagtgctagaggaggcatctaaagttgcctggatgagcactcaattagct
ggaaatttgtcatctatttggaaactgcatggtgacatacagcttacttacgcaaagtgt
tatccatggatggaggagggagatggtttagaatttgatatggaatcttttgataattcc
atcctttcatggaaacatacctgctgtttggctgcgaaaactgccaggtgctcttatcaa
cgagctttacacttggccccgtggcaagctaatatgtatattgacattgcagtaacttca
gatctcatagactctttagacaacagttctggacatgacttaagtgcttggcagcaatca
gagaagatggctttgggagccttgttacttgagggtgacaattctgagttttgggtagcc
ttgggatgtttgtctgatcataaagcattgaaacaacatgctctaatcaggggattgcaa
ttgaatgtatctctagctgttgcttgggcatacctagggaagctttatagaaaacaaggt
gagaaacaatttgctagacaatcatttgattgtgccagaagtatagatccttcacttgct
ttaccatgggcaggcatgtcagctgattttcatgctggagagtctgcagtcggagaagct
tatgagagctgcttacgagctgcgcagatattgcctcttgccgaattccaaattggtctt
gcaaagcttgctcttgcttcagggaatctttcatcttcacaggtctttgaagccatcagg
caggccatgcagcgtgcacctcactatcctgaatgccataatttgaatgggctagtttct
gaggcacaatgcaattatcagtctgctgccgtttcttatagactagcacgccgtgcaatc
accaatttgtcaggcagtgacagaaagtcgcatatgacggatatatctgtcaatttggcc
cgatcccttagtaaggcagggaatgctctagatgctttgcacgaatgtgaagatttgaag
aaagaagggttgctcgacgtggaaggtttgcaaatatatgctttctccttgtggcaactt
ggtgagactaacctggctctttctgtggtaagaagtctggctgtgagcgtttctacaatg
gagcaaaaatctgcagctgcccctgttgtttttatctgtagactcctttattatatttct
ggactggattcagccatcaatagcattctgaagatgccaaagcaactatttcggagttcg
aagatcagtttcatagtatctgctattcatgctctagatcaaagtaatcgtcttcagtct
attgtgtcaagcacccgtgactatcttaagtctcatgaagagataactggaatgcacttt
ttgatagcacttggtaaactagtaaaacatggatcagaatgctgtcttggatatcaaagc
ggagttaatcaccttaggaaagctcttcatatgtatcctaacagtagcttattaaggaat
tttcttggttatcttttgttgtccactgaagaatggaatgatacccacattgcaactagg
tgttgcaacgttgatactatgaatccaattgaaggtggtttaaaatcagcatatgaaatt
cttggtgcaggagcagttgcttgctatgctgttggcacttgcaatcccaagttctcttac
ccaacatgcacataccagtgcctgaatgaacctggaaccatccagcaactacagaaatgt
ttacgcagagaaccatggaaccagaacataaggtatttgcttgttctcaatttactgcag
aaggcacgtgaagagagatttccttgtcatctttgtattatacttgagcggctaataact
gtagctctttccgatgaattttatcataatgatgactcatcttatgaatataagaaattc
cagcttctactttgtgcttctgagatctgtttgcaaggtggtaatttgactggctgtatc
aaccatgccaaaaatgcttcatcgattatgctccctgatggctatcttttctttgcacac
ttgctactactccgtgcctatgcctcagaaggtaatatggtaaaccttcaaaaagagtat
ataagatgcttgcagctcaagacagatcttcatattggttggatatgtctaaaactcatg
gagactcgttatgaagtgcaaactgacttggatatgttagaactgagcttcagagaatgc
ccaacagagtcaatgaattcacggaatatgtggggggctatattcagtctggtgaaaggc
ttgatttgtatatggaaccaggacattgtttctgcagaagagtttcttgcacaagcttgt
tcattggcgggtgctgagtgcagcctcctgctttgtcatggtgccacctgtatggagctt
tcccgccgggggtgtgcttcacagttcttatcacttgccataaggagtcttgttaaagct
caagaagcttctctcattcccttaccaattgtctcagcattactagcgcaagcagtagca
agtcttggctcaaaagagaagtgggagaagaacctccgtcttgaatggcccacttggcca
ccagaaatgaggcctgctgagctgttcttccagatgcatttgcttgcaaaacagtcaaaa
gctagtccacaatcttccagtgtggagttttgtcagagtccgcaaagatgggttcttcga
gcaattcatacaaacccttcttgtatgagatattggacggttttgcagaagtttgtggaa
tga
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