Pyrus x bretschneideri (Chinese white pear): 103928608
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Entry
103928608 CDS
T03446
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103928608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103928608
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103928608
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103928608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Dimerisation
Motif
Other DBs
NCBI-GeneID:
103928608
NCBI-ProteinID:
XP_009335954
LinkDB
All DBs
Position
Unknown
AA seq
2399 aa
AA seq
DB search
MLKFTLATASQIRFLLQGVNDANSDSILREVSQFIEYGIEGSILLLQACLDHLTNYRTEL
KNAALERVFASIFKSLLDRPNFCTVFCQSLRNTEISEGILENISNALHLSVSEKTGIALA
LSDSENLDTRICGKNFCMAQIQKLCENPIVWNSSEQIQNIVMFLQRSEGLSKHVDSFMQM
LSLLQLKDDSFSVLTPLLSDELRDANFLSNVDLLHENGENNFDAILSEMEKEISMGDIMK
ELGYGCTVDSSQCSEILSLFLPLTEITISKILGMIASTHVGLEDNQNTFSTFRLALGNST
LSDLPMLNTWNIDVLVDTIKQLAPGTNWIQVIENLDHEGFYIPNQEAFSFFMSVYQHVCE
DPIPLHVICGSVWKNTEGQLSFLKHAISAPPEVFTFAHSVRQLAYIDVVHGHKLQLGHAN
HAWLSLDLLDVLCLLAERGHALAVRSMLEYPLKHCPEVLLLGMAHTNTVYNLLQYEVSYT
VFPMMVKNATSSGIINHLWHINTSLVLRGLVDAHNCDPDNIARILDICQELKILSSVLEM
MPSSFSIRMAALASRKELVDLEKWLSNNLNTHKDIFFEECIKFLKEIQFGGSQDFSTRPF
QHSGAVSNIYVDTATIFLKVLKAYIGLIASSQLTDELERLSVTIMDSNPRLQNGDPTEST
DGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSIKREQSIFECMIANLFEEYRF
FPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQF
VDRLIEWPQYCNHILQISHLRSTHSELVAFIEQALARISLGHLDSDGSNHASAAHHHGPS
QGTPGNVELNGSTILHTGQQLSSPLQLQQRHESSLDDHHKASNSSNDIKPPLSSAVQPSV
GPVDDPPSIQKSQSALSAPVMLSSASPGFVRPSRGVTSTRFGSALNIETLVAAAEKRDTP
IEAPASEIQDKISFIINNISVANVEAKSKEFAEIMKEQYHPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKGLNKEIVQATYENCQVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDLKEITPRSLLKDRNRELEGNPDFSNKDIGSSQPQLV
ADVKSGMLSPLNQVELPVEVAPSNSGSHTHLLSQYAPPVHISTGTLIEDEKLLPDQIPAQ
GLLQATPSQSPFSVPTPISNIATHVVINPKLGALGLHLHFQRVVPIAMDRAIKEIVSGIV
QRSVSIATQTTKELVLKDYAMESDETRILYAAHLMVASLAGSLAHVTCKEPLRTSISTQL
RNSLQGSNIPNDHLEHAVQLVTNDNLDLGCAIIEQAATDKAVQTIDGEITQQLSLRRKRE
GAGTTFFDANMYTQSGSMPESLRPKPGHLSISQQRVYEDFVRLPWQTQSSQNSHVLPAST
AAPSASAGLNGTFGSASVQLNTGYSAGPGSKFDAVSRPLDEAVEPNPALHPSSSSICVGA
GDGVSQHSSENDSVIGSFLSAASAPELQSVESSDAIKESGISSQPLPSSTATERLACNIS
EPSLNTRDALDKYQIVSQKLEDLVTNDAKESEIQGVIGEVPEIILRCVSRDEAALAVAQK
VFKGLYENASNHTHVSAHIAMLTAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIHS
ELLNLAEYNVQMAKLIDGGRNKLATEFSISLLQSLVIEESKVISELQNLVDALAKLAAKP
GFPESLQQLVEMVKYPASIVGAPSAINVGKEDKGRISKDKKASVHSLVSREDFSNVESVE
PDPPGFREQVSMLFAEWYRICELPGANDAANNHVILQLHQNGLLKGDDMTDRFFRVLTEL
SVAHCLSSEMTIPGTLQTPQQVPNFSFLAIDIYAKLVFLILKGSNKLFLLSKILAVTVRF
IEKDAEEKKGSFNPRPYFRLIVNWLLDLGSLDPVIDGANFQILTAFANAFHALQPLKVPT
FSFAWLELVSHRSFMPKMLAGNGQKGWPYIQRLLVHLFQFMEPFLRNAELGVPVHFLYKG
TLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDL
LAEISQSPRILSEVDAALKVKQMKADVDEYLKTRQQGSSFLTELKQKLLLLPSEAASAGT
RYNVPLINSLVLYVGMQAIQQLQARTPQAQSTQTVPLAVYLVGAALDIFQTLIVDLDTEG
RYLFLNAIANQLRYPNTHTHYFSFIVLYLFADSNQHEIIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtttacgctggccaccgccagccagattcgctttctcctccagggcgtcaac
gacgccaactccgactccattcttcgagaggtctctcagtttattgaatatggaattgag
ggaagcattttgctgttacaggcctgtctggatcatctcactaattacagaacagagtta
aagaacgcagcattggagcgggtttttgcctcaattttcaaatctctccttgatagacct
aatttctgtacggtgttttgtcagtccctaagaaatacagagattagtgaaggaattctt
gagaatatctctaatgcattacacctgtctgtatctgagaaaactggcattgctcttgcg
ttgtcagattctgaaaacctagacaccaggatatgtggcaagaacttctgtatggctcag
atccagaaattgtgtgaaaatcctattgtttggaattcatctgagcaaattcagaacatt
gttatgttcctccagcggtctgagggcctttccaagcatgtcgattcctttatgcagatg
ttatctttactgcagctgaaagatgacagtttttctgttttaactccattgctttcagat
gagctccgtgatgccaattttttgagcaatgtggatttgttgcatgaaaatggagaaaat
aattttgatgctattttatctgaaatggagaaggaaatcagcatgggagatataatgaag
gaattaggttatggatgcacagttgattcatctcagtgcagcgagattttatctcttttc
ttacctctgactgagattactatttcaaaaatccttggcatgattgcctctactcatgtt
ggtcttgaggacaatcagaatacattttcaacgttccggttggcgcttggtaacagcact
ttatccgatctgcctatgttgaacacctggaatattgatgtccttgtagatacaatcaag
caacttgctcccggcactaactggatacaagttattgaaaatttggatcatgagggattc
tacattcctaatcaggaggctttctcttttttcatgtccgtgtatcagcatgtgtgtgag
gatccaatccccctccatgttatctgcgggtctgtttggaagaataccgagggtcagtta
tccttccttaaacatgctatatcagcaccacctgaagtgtttacctttgcccactctgtt
aggcaactggcctatattgatgtagtgcatggccataagcttcaacttggacatgcaaat
catgcatggttgagtcttgaccttttggatgtactgtgtctactagctgagaggggtcat
gctcttgctgttcgatcaatgcttgaatatcctcttaaacactgtcctgaagtcctgctt
cttgggatggcacatacaaatactgtgtataacctgctgcaatatgaagtgtcttatact
gttttccccatgatggtaaaaaatgcaacgagcagtggcataattaaccacctctggcat
attaacacctcattggtgctgcggggattagtggatgctcacaattgtgatccagataac
atagctagaatattggatatctgtcaagagctaaagattctatcgtctgtcctagagatg
atgccttcctcttttagtatcagaatggcagcccttgcttccagaaaagagcttgtagac
cttgagaagtggttgagtaataatttgaatacgcataaggatattttctttgaggagtgc
ataaagttcttgaaggagattcaattcggtgggtcacaggatttctccaccagacctttc
caacattctggtgccgtgtctaatatttatgtggacactgctactatattcttgaaggtt
cttaaagcttatattggcttgattgcctctagccaacttactgatgagttggaaaggttg
tctgtaacaattatggattctaatccaaggctgcagaatggtgaccctacagagtcaacc
gatggatatgcagatgatattgaagctgaagcaaactcttactttcatcaaatgttttct
ggtcagttgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttctata
aaaagggaacagtcaatttttgagtgcatgattgcaaatctgtttgaagaatatagattt
ttccccaagtatcctgaaagacagctcaaaattgccgcagttctgtttggctctgtcatc
aaacaccagcttgtaactcatctgactcttgggatcgctctgcgtggtgttttagatgca
ttgcgcaaacctgcggattcaaaaatgtttgtgttcggaactaaggccttggagcagttt
gtggatcgtctgattgagtggcctcagtattgtaatcatattcttcaaatatcccatctg
cggagtactcattcagagcttgtggctttcattgaacaggctcttgccaggatttcatta
ggccatttagactcagatggaagtaaccatgcttccgctgctcatcaccatggtcccagt
caaggtaccccaggaaatgtagagttaaatggctctaccatcttacatactgggcaacaa
ctttcttcaccactccagcttcaacagagacatgaaagttctcttgatgaccatcataaa
gcctcaaattcatcaaatgacataaagccacctttatcttctgctgtgcaaccttcggtt
ggtcctgttgatgatcctcctagtattcagaagtcacaaagtgcactcagtgctccagta
atgttgtcttctgcttcccctggttttgttcgtccttctcgaggagttacttctaccagg
tttggctctgctttgaatattgaaacattagttgctgctgccgagaaaagagatactccc
atcgaggctccagcatcagagattcaggacaagatatcatttataattaataatatttca
gttgccaatgttgaagctaagtcaaaggagttcgctgaaataatgaaagagcagtaccat
ccttggtttgcacagtatatggttatgaaaagggcaagcattgagccgaattttcatgat
ttgtacctgaaatttctggacaaagttaattctaaggggttgaataaggagattgttcaa
gccacttacgaaaactgtcaggttcttcttggatctgagcttataaaatcaagctcagaa
gagcgttcattgttaaaaaatttaggcagttggcttgggaagcttacaattggaaggaat
caagtcttaagggctcgggaaatagatcccaaatctttgattatagaggcatatgaaaag
gggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagtagc
ttggcatatcagccaccaaatccttggacaatgggtattcttggattacttgctgagata
tattcaatgccaaacttgaaaatgaacctgaagtttgatattgaggttctattcaagaat
cttggtgtggatttgaaggagataactccacgttctcttctcaaggaccggaacagagaa
cttgaagggaatcctgatttctctaacaaagatattggatcatcccaaccacagttggtt
gctgatgtgaaatccggaatgttatctccactaaatcaggttgaactacccgttgaggtt
gctccatctaattctggaagccatacacatctactatctcagtatgcaccccctgttcat
atttcaactggcaccttaattgaggatgaaaagctgttgcctgatcagattcctgctcaa
ggactgttacaagctactccatcccagtcaccattctctgttcccacaccaatatctaat
attgcaactcacgtggttattaacccgaaactcggtgctttgggattgcacttgcatttt
cagagggtggttccgattgcaatggacagagctatcaaagagatagtatctggtatcgtt
cagcgcagtgtttctatagctactcagacaactaaagaacttgtcttaaaggattatgcc
atggaatccgatgagacaagaatattatatgcagctcacttgatggttgcaagtttggca
ggaagtctagctcatgtaacttgcaaggaacccttgcgtacttcaatatcaactcagctg
cgaaattcccttcagggatcaaacattccaaatgatcatctggaacatgctgtacaactt
gttactaatgacaatctggatcttggctgtgcaatcattgaacaggctgctactgataag
gcggtacaaacaattgatggagaaataactcaacaactgtcattaagaaggaagagggaa
ggtgcaggtacaacattttttgatgctaacatgtacacacaaagtggcagtatgcccgag
tcccttcgccctaaacctggtcatttgtccatttctcaacaacgagtttatgaggacttt
gtgcggcttccctggcaaacccagtctagccagaattcacatgttcttcctgctagtact
gcggctccatctgcaagtgctggtctaaatggcacatttggttcagcctcggttcaactt
aacacaggctactcagcaggtcctggaagcaagtttgatgctgtttctcgtccactggat
gaggcggttgaacccaatccagctctgcatccaagttcatcctctatttgtgttggagcg
ggtgatggtgtttcccagcatagttctgagaatgattctgtcattggttcatttctttct
gctgcttctgccccagagctgcagtcagtagagtcatctgatgctataaaggaatctgga
atttcttcacagccgctaccttcatctactgcaactgaacgtctggcatgcaacatctca
gaaccttctctcaatacaagggatgcattggataaataccagattgtttcacagaagctt
gaagatttggtaaccaacgatgctaaagagtcagaaattcagggagtaattggtgaagtt
cctgagattatactcagatgtgttagtcgagatgaggctgccttggctgtggctcaaaag
gttttcaagggtttatacgagaatgcatcgaaccatactcacgtcagtgctcatattgca
atgctgacagctattcgtgatgtttgcaagcttgttgttaaggagctcaccagttgggtt
atttattctgatgaagagcggaagtttaacaaagatattaccgttggccttattcacagt
gaattactaaatcttgcagagtacaatgttcaaatggcaaaactcattgatgggggcaga
aataagcttgcaactgagttttcaatttcccttctccaatctttggtgattgaagaatct
aaagttatatcagaacttcaaaatcttgttgacgcattggcaaagctcgctgcaaagcct
ggatttcctgagtcgctacagcagctggttgaaatggtaaagtatcctgcttctatagtg
ggtgctccgtctgctattaatgtaggaaaagaggacaagggcagaatatctaaggataaa
aaggcttctgttcactctctggtgagcagggaagactttagtaatgtggagtctgtcgaa
ccagatcctcctggattccgtgagcaggtgtccatgctgtttgcagagtggtaccggatt
tgtgaacttcctggtgcaaacgatgcagctaataaccatgttatcttgcagctgcatcaa
aatggtctgctaaaaggggatgatatgacggaccggtttttccgtgtcctcacggagcta
tctgttgcacattgcctatcttctgagatgacaattccagggacactgcaaacacctcaa
caagtgccgaatttctccttccttgctattgatatctatgctaaacttgttttcttaatt
ttgaagggatcaaataaactatttctcttgtctaagattttagcagtcacagtgagattc
attgaaaaggatgcagaggagaaaaaaggatctttcaacccaagaccatattttagattg
attgttaactggcttctagaccttggttctttggatcctgtgattgatggtgctaacttt
cagatattgacagcatttgcaaatgcatttcatgctttgcagccccttaaggttcctaca
ttcagctttgcatggcttgagttggtgagtcataggagtttcatgccaaaaatgcttgct
ggaaatggccagaagggttggccctatatccaacgtttgctggtacatttgtttcaattc
atggagccatttttgaggaatgctgaacttggagtcccggttcatttcctgtataaaggc
acacttagggtgctgctagtgctgctccatgactttccggagttcctttgtgattatcat
tttacgttctgtgatgtaattcctccaagctgcattcaaatgcgaaatatcatcctcagt
gcgtttccccgtaatatgaggctaccagatccatctactcccaacttaaagattgattta
cttgctgaaatcagtcagtctccacgtattctctctgaggttgatgcagctctaaaagtg
aagcagatgaaagctgatgtggatgaatacctcaagacaaggcaacagggttcttcattt
ctgactgaactgaagcaaaagttgctccttttaccaagcgaagctgcctcagctggtacc
cgttacaatgtacccctgatcaactcccttgtgctttatgttgggatgcaggctatccag
cagcttcaggctagaacgcctcaagcccaatctacccaaactgttccattggctgtctat
ttggtgggtgctgctttggatatttttcagactctgatagtggacctagatactgaaggg
cgctaccttttcctaaatgcgattgcgaaccaactgcgatatccaaacacccatacccat
tacttttccttcattgttctgtacttgtttgccgattcaaaccagcatgaaattatccag
gagcaaatcacaagggtattgttggaacgtctgattgttaaccgacctcatccatggggt
cttctgattaccttcattgagcttatcaagaatccgagataccagttctggaaccgagca
ttcatcagatgtgcaccggagattgaaaaacttttcgaatctgtgtcaaggtcttgcggc
ggtccaaaacctgtggacgaaagtatggtctcaggttgggtatcagagagtgcccactaa
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