Pseudomonas xantholysinigenes: HU772_016715
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Entry
HU772_016715 CDS
T07643
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pxn
Pseudomonas xantholysinigenes
Pathway
pxn03030
DNA replication
pxn03410
Base excision repair
pxn03420
Nucleotide excision repair
pxn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU772_016715 (ligA)
03410 Base excision repair
HU772_016715 (ligA)
03420 Nucleotide excision repair
HU772_016715 (ligA)
03430 Mismatch repair
HU772_016715 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxn03032
]
HU772_016715 (ligA)
03400 DNA repair and recombination proteins [BR:
pxn03400
]
HU772_016715 (ligA)
Enzymes [BR:
pxn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU772_016715 (ligA)
DNA replication proteins [BR:
pxn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU772_016715 (ligA)
DNA repair and recombination proteins [BR:
pxn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU772_016715 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU772_016715 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU772_016715 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU772_016715 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
A24_N_bact
DUF2481
Motif
Other DBs
NCBI-ProteinID:
QXI36984
UniProt:
A0A9E6TW13
LinkDB
All DBs
Position
complement(3766753..3769107)
Genome browser
AA seq
784 aa
AA seq
DB search
MNAEPRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALAAFSQVRHEIPMLSLGNAFEEDDLRDFDRRVVEGLDLQGGDLFAARAVVDYSCE
PKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGE
VYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSEP
FGDSHIGILEKLKTWGLPISRELRHAAGIEECLAYYRDIGARRNELPYEIDGVVFKVNAL
ASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVS
NATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEGARAVEVPSACPVCGSQ
VERTQLVKRSKGKETTSEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMDIDGLGEKSVEQL
VDENLIRSPADLYQLKFEQVVALEGFAEVSSRKLLEAIEASKRPSLARFIYALGIPDVGE
ETAKVLARSLGSLARVQVALPQVLTYLPDIGLEVAYEIHNFFEDEHNRAVIGQLLDSGMQ
LQEEGELAAEFAASTTLAGMLAKLDIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQALN
TKAAEGVREFFKVEANQQLARAIEAQLLDFGMHWSCEKKTAEGLPLAGQTWVLTGTLERM
SRDVAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVAVMDEEAFVGFLAER
GISV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgaaccccgaatccatgagctgcgtgccgagctcgaccagcacaactaccgc
tactacgtactcgacgaacccagtgtcccggacgccgaatacgaccgcctgttcaacgag
ctcaaggcgctggaggccgagcatccgcatctggtgacgcccgattcaccgacccagcgc
gtcggtggcgcggcgcttgcggcattcagccaggttcgtcatgaaatccccatgctcagc
ctgggcaacgctttcgaggaagatgacctgcgcgacttcgatcgccgcgtggtcgagggc
ctcgacctgcagggcggcgacttgttcgccgcgcgcgccgtcgtcgactacagctgcgag
cccaagctcgacggcttggcggtgagcctgctgtaccgcgatgggcagttggtgcagggc
gccacccgcggtgatggcactaccggcgaggacatcagcgccaacgtccgcaccgtgcgc
aacatcccgctgaaactgcaaggcgaaggttggccggcggtgctggaagtgcgtggcgag
gtgtacatgagcaaggccggtttcgaccggctcaacgccgcccaggccgaagccggcggc
aagaccttcgccaacccacgcaacgctgccgccggcagcctgcgccagctggattcgaaa
atcactgccagccgcccgctggagttctgttgctacggtgtcggccaggtgtcggagcca
ttcggcgacagccatatcggtattctcgagaagctcaagacctggggcttgccgatcagt
cgcgagctgcgccacgccgccggcatcgaagagtgcctggcctattaccgcgacatcggc
gcccggcgcaacgagctgccctacgagatcgatggcgtggtgttcaaggtcaatgccctg
gcctcccagcgtgagctgggcttccgcgcccgtgagccgcgctgggccatcgcccacaag
ttcccggccatggaagagctcaccgaggtgctcgatgtcgagttccaggttggtcgtacc
ggcgcggtgaccccggtggcgcgcttgaagccggtcaaggttgccggtgtcaccgtgtcc
aacgccaccttgcacaacatggacgaaatcgcccgcctgggcctgcgcatcggcgacacg
gtgatcattcgccgggccggcgacgtaatcccgcaggtgatgcaggtggtgctcgagcgc
cgccccgagggcgcgcgcgcggtcgaagtgcccagcgcctgtccggtgtgtggctcgcag
gtcgagcgcacccaactggtcaagcgcagcaagggcaaggaaaccaccagcgaaggcgcg
gtgtaccgctgcgttggtcgtctgagctgcgccgcccagctcaagcaggcgatcatccac
tacgtgtcgcgccgggccatggatatcgacggcctgggcgagaagagcgtcgagcagttg
gtcgatgaaaacctgattcgttcaccggccgacctgtatcagctcaagttcgagcaggtg
gtcgccctcgaaggctttgccgaggtgtccagtcgcaagctgctggaggccatcgaggcc
agtaagcgcccaagcctggcgcgcttcatctacgccttgggcattcccgatgtgggagag
gagaccgccaaggtgctggcgcgttcgctgggcagtctggcacgggttcaggtggccttg
ccccaggttttgacctacctgccggacatcggccttgaagttgcctacgagatccacaac
ttcttcgaggacgagcacaaccgtgcggtgatcgggcaattgctcgacagcggcatgcag
ttgcaggaagagggcgagctggctgctgagttcgctgccagcaccacgctcgccggcatg
cttgccaaactcgacattccgtcggtggggccgaccggggccgagaagctggtggacaag
ctgggcaccctggacaagatcatcgccgctgacggcatcgacctgcgtcaggcgttgaat
accaaggcggccgagggcgtgcgcgagttcttcaaggtcgaggccaaccagcagctggcc
cgtgctatcgaagcccagttgctggacttcggcatgcactggtcgtgcgagaagaaaact
gccgagggcctgcccctggccggccagacctgggtgttgaccggtaccctggagcgcatg
agccgcgacgtcgccaaggacaagctggaaagcttgggggcgaaggtggcgggctcggta
tccggcaagactcactgcgtggtcgccggccccggtgcaggctccaagctggccaaggcc
gctgagctgggcgttgcggtgatggacgaggaggcgttcgtaggcttcctggcggagcgt
ggtatcagcgtctga
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