Papilio xuthus (Asian swallowtail): 106127241
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Entry
106127241 CDS
T07456
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pxu
Papilio xuthus (Asian swallowtail)
Pathway
pxu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106127241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxu03019
]
106127241
Enzymes [BR:
pxu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106127241
Messenger RNA biogenesis [BR:
pxu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106127241
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
PUS7L_N
DUF1947
Motif
Other DBs
NCBI-GeneID:
106127241
NCBI-ProteinID:
XP_013180779
UniProt:
A0AAJ6ZWX4
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MEITRKNFAEELENITNNLKRSCFVGFDAEFTALLSGECFTYRLFDTNEERYDKIKDEVS
KMIISQVGLTMFQYDRDTDGYNAIGYTFHLCPQVLGDIDQSFIFQASTLKFLCKHNFNFN
KFIYEGIPYLSKVEEDEIIQQIKNNNLASYLTSALEIEEEKELQYYSNKVSDWLHSSEDG
TMYIDVQNPIQRYLIHTELRQRFPNILTTDSLGNSNKILIYRDKSIEGANSAPMETLEKN
LVDKLLGFSHIIQLLVQHKKPIIGHNIFMDLLLLHNQFIGPLPKKYCVFKKNIHSMFPVV
YDTKYISHEMGKKLTLDEVWQSNILQDLYEFFAKRKCKKLQNGINFITLIAPFNVNQSYH
EAGWDSYCSGFCFIRLGHWAACDNMGVYRPVGPTEKLAALAPYCNKVNVIRGATPYMSLD
ETDPPTHRPNLLHIKSLKERIMNIDKVASAVAGCGAADVRALGRRAALVAAGTHFTADKI
LKKFKDSRDYRVSTYKPYGQSATRRLAIWSGALITGSLLIMLLHKKVKS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggagataacaagaaagaactttgctgaggaattggaaaacataaccaataatttgaaa
cgttcatgttttgttggattcgatgctgaatttactgctttactatcaggagagtgtttt
acgtacagactgtttgacaccaatgaagaaaggtatgataaaattaaagatgaagttagc
aaaatgattatatcacaagtgggtctcacaatgttccagtatgacagagacactgatggg
tataatgctatagggtatacatttcacttgtgcccacaagtattgggagatattgaccaa
tcattcatatttcaagcatctacactcaagtttctgtgtaaacataattttaattttaat
aagttcatttatgagggtattccatatttatcaaaagttgaagaagatgaaatcattcaa
caaataaaaaacaataatcttgctagctatctaactagtgcattagaaattgaagaagaa
aaggaattacaatattatagcaataaagtcagtgattggctccacagcagtgaagatgga
acaatgtatatagatgtacagaacccaatacaaagatacctcatacatacagagcttcgg
caaaggttccccaatattcttacaactgatagcttaggtaatagcaataagattctaata
tatcgagataaaagtatagaaggtgctaacagcgcaccaatggagacattagagaagaat
ttagttgacaaattattaggattttcacacataatacaattgttagttcaacacaaaaaa
ccaataatcggtcataatatatttatggatttattacttttacacaatcaatttataggg
ccattgcctaaaaagtattgtgtttttaaaaagaatatacacagtatgttcccagttgtt
tatgatactaaatatatttcacatgaaatgggcaagaaattaactttggatgaagtgtgg
caatcaaatatattacaagatttatatgaatttttcgctaaaagaaaatgcaaaaagctg
caaaatggaataaactttataacgttaattgctccttttaatgtgaaccaatcatatcac
gaggctggctgggactcttactgttcagggttctgcttcatcaggctgggtcattgggcg
gcttgcgataacatgggagtataccggccggtggggcctacagagaaactagccgccctc
gccccatactgcaacaaagtcaatgtcatacgaggcgccacgccctacatgagtctcgat
gaaacggatccgcccacgcatcgtcccaatttgttgcacatcaaatctctaaaggagcga
attatgaacatcgataaggtggcgagcgcggtggcggggtgcggggcggcggacgtgcgc
gcgctgggccgccgcgccgctctggtcgccgctggcacgcacttcacggctgataaaatt
ctaaagaagttcaaagacagccgggattacagagtctcaacatacaaaccgtacgggcag
tccgcaacgcgtcgcctcgcaatctggagcggtgctttgatcacgggaagcttgttaata
atgctactacataagaaagtcaaatcgtaa
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