Puma yagouaroundi (jaguarundi): 121021253
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Entry
121021253 CDS
T07555
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pyu
Puma yagouaroundi (jaguarundi)
Pathway
pyu04820
Cytoskeleton in muscle cells
pyu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121021253 (COL5A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121021253 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pyu00536
]
121021253 (COL5A1)
Glycosaminoglycan binding proteins [BR:
pyu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121021253 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121021253
NCBI-ProteinID:
XP_040317448
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MDVHTRWKARSPPRPGAPLLSPPLLLLLLLLLWAPPLSRAAQPADLLKVLDFHNLPDGIT
KTTGFCATRRSSKGPDVAYRVTKDAQLSAPTKQLYPASSFPEDFSILTTVKAKKGSQAFL
VSIYNEQGIQQIGLEMGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIALSIHKKN
VTLILDCKKKTTKPLDRSDHPVIDVNGIIVFGTRILDEEVFEGDIQQLLFVSDHRAAYDH
CEHYSPDCDTAVPDTPQSQDPNPDEYYPEGEGEGGAYYYEYPYYEDAEDPGREPAPTTRP
VEAARETTEIAEEQTAAPTAAPSVPDTSEGAGKEDDPDLGVYDYMPSEDYYTPAPYEDLN
YEGFENPDLPPDHGAGAEVPTSTTSTANASNPAPLPEDDLEGEFTEETIRNLDETYYDPY
YDPTVSPSEIGPGMPANQDTIYEGIEGPRGEKGQKGEPAIIEPGMLMEGPPGPEGPAGLP
GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVS
AQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQGPP
GPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDD
GDRGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPP
GQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPP
GPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGED
GPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGR
GTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFP
GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPP
GPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPP
GPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPV
GLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEP
GPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPS
GAPGADGPPGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAA
GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEAGQTGSPGPT
GEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLR
GIPGPVGEQGLPGAPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK
GDRGLPGPQGSSGPKGEQGIAGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHP
GPPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYADYADGMEEIFGSLNSLKL
EIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGATC
VFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASANQ
NITYNCYQSVAWQDAATGSYDKAMRFLGSNDEEMSYDNSPYIRALVDGCATKKGYQKTVL
EIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFLG
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggacgtccacacccgctggaaagcgcgcagcccgccgcgcccgggcgccccgctgctg
tccccaccgctgctgctgctgctgctgctgctgctgtgggcgccgcctctgagccgcgca
gctcagccagcagatctcctgaaggttctagattttcacaacttgcctgacggaataaca
aagacaacaggtttttgtgcaacgcggagatcttccaaaggcccagatgtcgcttacaga
gtcacgaaagatgctcagctcagcgcacctaccaagcagctgtatcctgcgtcttcattt
cccgaggacttctccattctaaccactgtgaaagccaagaaaggcagccaggccttcctg
gtctccatctacaatgagcagggcatccagcagatcggcctggaaatgggccgctctccg
gttttcctctatgaggaccacacagggaaaccagggccagaggactatcccctcttcagg
ggcatcaacctgtcggatggcaagtggcacaggatcgctctcagcatccacaagaagaac
gtcaccttgatcctggattgtaaaaagaagaccaccaagcccctcgaccgcagcgaccac
cccgtaatcgacgtcaacggcatcatcgtgttcggaacccggatcctggatgaggaagtg
tttgagggtgacatccagcagctgctctttgtctcggaccatcgggcggcttacgatcac
tgtgagcactacagcccagactgtgacaccgcggtccccgacaccccccagtcacaggat
cccaacccggatgaatattacccagaaggagagggggaaggcggcgcgtactactacgag
tacccctactacgaggacgcagaggacccgggcagggagcccgcccccaccaccaggccc
gtggaagctgctagagagaccacagagattgccgaggagcagaccgcagcccccacggca
gccccctcagtgcccgacaccagcgagggggccgggaaggaggacgaccccgacctcggg
gtctacgactacatgcccagcgaggactactacacgcccgccccgtacgaggacctgaac
tacgagggcttcgagaatcccgacctgccccccgatcacggcgcaggggccgaggttccc
accagcacgaccagcacggccaacgcctccaatcctgccccgcttccggaagatgacttg
gaaggcgagtttacggaagaaaccatcaggaacctggacgagacctactacgacccctac
tacgaccccacggtgtccccgtcggagatagggccgggcatgcccgccaaccaggacacc
atctacgaagggatcgaagggccccgaggagagaaaggccagaagggagagcctgccatc
atcgagccgggcatgcttatggaggggccgccgggccccgaaggccccgcgggtctccca
ggacctccgggaacgatgggacccactggccaagtgggtgaccctggagaaaggggtccc
cctggacgcccaggccttccaggggctgatgggctgcccggccctcctggaaccatgctc
atgttgcctttccgctttggagggggcggtgacgctggctccaagggtcccatggtgtcg
gctcaggagtcccaggctcaggccatcctgcagcaggcccggctggcgttgagggggcca
gctggcccgatgggtctgacggggaggcccggccccatgggccctccggggagcggaggt
ctgaagggcgaaccgggagacatggggcctcagggtccccgaggagtgcagggccctcct
ggcccggccggaaagcctggaagaaggggccgagctgggagtgacggagcaagagggatg
ccggggcaaacgggcccgaagggcgaccgcggcttcgacggcctggctggactgcccggg
gagaagggccaccggggtgaccctggtccttctggcccgccaggacctccgggagatgat
ggagatcggggtgatgatggagaagtcgggcccagagggctgcccggggaacccgggccg
cgtggtctgttggggccaaaggggcccccgggccctcctggacctccgggtgtgacgggt
atggatggccaaccaggtccgaaaggaaatgtgggcccccagggggagcccggccccccg
ggacagcagggcaatccaggtgcccagggtctcccaggcccccagggtgcaatcggtcct
ccaggggaaaagggtcccctggggaaaccaggcctgccaggaatgcccggtgctgacgga
cccccggggcaccctggcaaggaaggccctccaggagagaaaggaggccagggtccaccc
ggcccccagggccccatcggctatccgggtccccgaggagtcaagggagctgatggcatc
cgcggtctgaaaggcaccaagggcgagaagggtgaagacggctttcctgggtttaaaggc
gacatgggaatcaagggcgatcggggggagatcggaccccctggtcccagaggagaagat
ggccccgaaggcccgaagggtcgtggaggtccaaacggcgacccgggtcctctgggaccc
cctggggagaagggaaaactcggagtgccaggattaccaggttacccgggaagacaaggg
cccaagggttctatcggatttcctggctttcctggtgccaacggggagaagggcggcagg
ggcacacctgggaagccaggaccacgggggcagcgaggcccgacgggtccgaggggcgaa
cggggcccccggggcatcactgggaagcctggccccaagggcaactctggaggcgatggc
cccgctggccctccgggtgaacggggacccaacggaccccaaggacccaccggtttccct
ggacccaagggccctcctggccctccgggcaaggacgggctcccgggacaccctggacag
agaggagagaccggtttccaaggcaagaccggccccccagggcccccgggcgtcgtgggc
cctcagggtcccacaggagaaacgggcccaatgggcgagcgtggccaccccgggccccca
ggcccccccggtgagcaggggctccccggccttgccgggaaagaagggacgaagggtgac
ccaggtcccgccggcctccctgggaaagacggccctcctggactgcgtggtttccctggg
gatcgggggcttcccggtccagtgggcgcacttggactgaaaggcagcgaaggcccccct
ggcccgccaggccccgcgggatccccgggagagagaggcccggccggtgctgctgggccc
atcggaatcccagggagacccgggccccaaggacctccagggccggctggggagaaagga
gctcctggagagaagggtccccaaggcccagctggccgagatggcctccagggtcccgtg
gggctccccggtccagctggcccagtgggcccccccggagaagacggagacaagggagag
atcggggagcctggacagaaggggagcaagggggacaagggcgagcagggtccgcctggg
cccaccggtcctcagggccccatcggacagccaggcccctccggagccgacggtgagccg
ggccctcgcggccagcagggcctttttgggcagaaaggtgacgaaggtccaagaggattt
cctgggccccccgggccagtggggctgcagggtctgccgggacctcccggagagaagggc
gagactggggacgtgggtcagatgggacccccgggcccccccggcccccgaggaccctct
ggagctccaggcgctgacgggccaccagggcctccgggtggcataggcaatcccggtgcg
gtgggagagaagggtgagcctggtgaagccggagagcctggcctgcctggagaggggggc
cctccgggacccaaaggagaaaggggcgagaagggcgagtcgggcccttctggtgcagct
ggaccccctggacccaaaggccctcctggagacgacggtcccaaaggcagccccggccct
gtcggctttcctggagatcctggtccccctggagagcctggccccgcgggtcaagatggc
ccccctggtgacaaaggggacgacggtgaggctgggcaaacgggatccccgggccctact
ggtgaaccgggaccgtctgggcctccaggcaaaaggggcccccccggccccgcaggcccc
gaaggcagacagggagagaagggagccaagggggaagccggcttagaaggtcctcctggg
aagactggccccatcggcccccagggggcccctgggaagcccggccccgatggcctgcga
gggatccctggccctgtgggtgagcaaggtctcccaggcgccccaggccccgacggtccc
cccggccccatgggtcccccaggactccccggcctcaaaggagattctggccctaagggg
gaaaagggtcatccaggcttgatcggactcatcggacctccgggcgaacagggtgaaaag
ggcgaccgcggtctccccggcccccagggctcctccggccctaagggcgaacagggcatc
gctggtccttccggcccgatcggccctccgggccctcccggcttgccgggtcctcctggg
ccaaaaggtgctaagggctcctcgggtcccactggcccgaagggtgaggcaggccaccca
ggaccccccggcccgccgggtccccccggcgaggtcatccagcccctgccgatccaggca
tccaggacccggcggaacatcgacgccagccagctgctggacgacggggccggcgagagc
tacgcggactacgcggacggcatggaggagatcttcggctccctcaactccttgaagcta
gagatcgagcagatgaagcggcccctgggcacgcagcagaaccccgcacgcacctgcaag
gacctgcagctctgccatcccgacttcccggacggtgaatactgggtagatcctaaccaa
ggctgctccagagactccttcaaagtttactgcaatttcacggccggaggggcgacgtgc
gtcttccccgacaagaagtccgagggggccaggatcacttcttggcccaaagaaaacccg
ggttcctggttcagtgaattcaagcgcggtaaactgctctcctacgtggacgccgagggc
aaccccgtgggggtggtccagatgaccttcctgcgcctcctgagtgcctccgccaaccag
aacatcacctacaactgctaccagtcagttgcctggcaggacgcggccacgggcagctac
gacaaggccatgcgcttcctgggctccaacgacgaggagatgtcctacgacaacagcccc
tacatccgcgccctggtggatggctgtgctacgaagaaagggtatcagaagaccgtgctg
gagatcgacacccccaaggtggagcaggtgcccatcgtggacatcatgttcaatgacttc
ggtgaagcgtcacagaaattcggatttgaagtggggccagcttgcttcctgggctag
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