Puma yagouaroundi (jaguarundi): 121027577
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Entry
121027577 CDS
T07555
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pyu
Puma yagouaroundi (jaguarundi)
Pathway
pyu04820
Cytoskeleton in muscle cells
pyu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121027577 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121027577 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pyu00536
]
121027577 (COL11A1)
Glycosaminoglycan binding proteins [BR:
pyu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121027577 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
121027577
NCBI-ProteinID:
XP_040327059
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MERWSSRWKTKRWLWNFTITTLALTFLFQASEVRGAAPVDVLKVLDFHNSPEGISKTTGF
CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTIKPKKGIQSFLLSIYN
EHGIQQVGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSVPQAAQAQEPQVDEYAPEDILEYDYEYGEAEYKEAEFVTETPTVAEETIAQTEK
KKSNFKKKTRTVATNSKEKSKKFTPPKSEKYASKKKKSYPATAKAKVGVKANIVDDFQEY
NYGTEESYQTETPRHVSGTNEPNPVEEVFTEEYLTGEDYDSQRKNSEDTLYENKGIDGRD
SDLLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAETDITETSINGHGAYGEKGQKG
EPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLPGADGLPGPP
GTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSS
GAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLP
GDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQPGIA
GVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGAD
GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFK
GDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQ
GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD
GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV
GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP
GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK
GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP
GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK
GENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEA
GTGGPKGERGEKGEAGAPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQD
GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP
GKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK
GEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPQ
GPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAENMQADAGDNI
LDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQG
CSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGN
SINMVQMTFLKLLTASARQNFTYTCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPF
IKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctggaatttcaccataaca
accctcgcactgactttcctcttccaggctagtgaggtcagaggagctgctccagtcgat
gtactaaaagttctagattttcacaattctccagagggaatatcaaaaacaacgggcttt
tgcacaaacagaaagaattcaaaaggttcggatactgcttacagagtttcaaagcaagca
caactcagtgctccaacaaaacaattattttcaggaggaacttttccagaagatttttca
atattatttacaataaaacccaaaaaaggaattcagtctttccttttatctatatataat
gagcatggtattcagcaagtcggtgttgaggttgggagatcacctgttttcctgtttgaa
gaccacactggaaaacctgcccctgaagactatcccctcttcagaaccgttaacatcgct
gacgggaagtggcatcgggtcgcaattagcgtggagaagaagactgtgacaatgattgtt
gattgtaagaagaaaaccacaaaaccacttgatagaagtgagagagcaatcgttgacacc
aatggaatcacggtttttggaaccaggattttggatgaagaagtttttgagggggacatc
cagcagctgttgatcataggtgaccctaaagcagcatatgactactgtgagcattacagt
ccagactgtgactcttcagtaccccaggccgctcaggctcaggaacctcaggttgatgag
tatgcacctgaggatattctggaatatgactatgagtatggggaagcagagtataaagag
gctgaatttgtaacagagacacccactgtagctgaggagacaatagcacaaactgagaaa
aagaaatccaatttcaaaaagaagacgaggacagtggccactaactcaaaggaaaagtcc
aaaaagtttacaccccctaaatctgaaaaatatgcatccaagaagaagaaaagttatcca
gcaacagcaaaagccaaagtaggggtaaaggcaaatattgttgatgattttcaagaatac
aactatggaacagaggaaagttaccagacagaaactcctaggcatgtatctggaacaaat
gagccaaatccagttgaagaagtatttactgaagaatatctaactggagaggattatgat
tcccagaggaaaaattccgaggatacactatatgaaaacaaaggaatagacggcagggac
tctgaccttctggtagatggagatttaggcgaatatgatttttatgaatataaagaatat
gaagataaaccaacaagccccactaatgaagaatttggtccaggtgttccagcagaaaca
gatatcacagaaacaagcataaatggccacggtgcatatggagaaaaaggacagaaagga
gaaccagcagtagttgaacctggtatgcttattgaaggaccaccagggcctgcaggacct
gcgggtcttatgggtcccccaggtctacaaggccccactggaccccctggtgaccctgga
gagaggggccccccaggacgtcctggcttaccaggggctgatggtctacctggtcctcct
gggaccatgttaatgttaccgtttcgttatggtggcgatggttccaaaggaccaaccatc
tctgctcaggaagctcaggcacaggcgattcttcagcaggctcggattgctctgagaggt
ccacctggcccaatgggtctaactggaagaccgggtcctgtgggggggcctggttcatct
ggtgccaaaggtgagagtggtgatccaggtcctcagggccctcgtggtgttcaaggtcca
cctggtccaacgggaaaacctggaaaaaggggtcgtccaggtgctgatggaggaagaggc
atgcccggagaacctggagcgaagggtgatcgaggatttgatggacttccgggtctgcca
ggtgacaaaggtcacaggggtgaacggggtccgcaaggtcctcctggtccccctggagaa
gatggaatgaggggagaagatggagaaatcggaccaaggggtcttccaggtgaagctggt
cctcgaggtttgctgggaccaagggggactccaggacctacagggcagcctggtattgca
ggtgtagacggccccccaggaccaaaaggaaacatgggtccccaaggggagcctggacct
ccaggtcagcaagggaatccaggacctcagggtcttcctggtccacaaggtccaattggt
cctcctggtgaaaaaggaccacaaggaaaaccaggacttgcaggacttcctggtgctgat
gggcctcctggtcatcctggaaaagaaggccagtctggagaaaaaggtgctctgggtcct
cctggtccacagggtcctattggttaccctggtccccgaggagtaaagggagcagatggt
gtcagaggcctcaagggctctaaaggtgaaaagggtgaagatggttttccaggattcaaa
ggtgacatgggtcttaaaggtgacagaggagaagttggtcaagtaggtccaagaggagaa
gatggccctgaaggacccaagggtcgagcaggtccaactggagaccccggtccttctggg
caagcaggagagaaggggaaacttggtgttccaggattaccaggatatccaggaagacaa
ggtccaaagggttccactggatttcctgggtttccaggtgccaatggagagaaaggtgca
cggggtgtagctggcaaaccaggacctcggggtcaacgtggcccaacgggtcctcgaggt
tcaagaggtgcgagaggtcccacggggaaacctggtccaaagggtacttcaggtggtgat
ggccctcctggccctcctggtgaaagaggccctcaaggacctcagggtccagttggattc
cctggacctaaaggtcctcctggaccacctgggaaggatggcctgccaggacaccctgga
caacgtggagagactggatttcaaggcaagactggccctccaggaccagggggtgtcgtt
ggaccacagggaccaacgggtgagactggtccaataggtgaacgaggacatcctggccct
cccggccctcctggtgagcaaggtcttcctggtgctgcaggaaaagaaggtgcaaagggt
gaccccggtcctcaaggtatctcagggaaagacggaccagcaggactgcgtggtttccca
ggtgaaagaggtcttcctggagctcagggtgcacctggactgaaaggaggggaaggtccc
caaggcccaccagggccagttggctcaccaggagaacgcggatcagcgggtacagctggc
ccaattggattgccagggcgtccaggaccccagggtcctcctggtccagctggagagaaa
ggtgctcctggagaaaaaggtccccaaggccctgcagggagagatggagtccaaggccct
gtgggtctcccagggcctgctgggcctgcaggctcgcctggagaagatggagacaagggt
gaaattggtgaaccaggacagaaaggcagcaagggtgacaaaggagaaaacggtcctcct
ggacctccaggtcttcaaggtcctgttggtgcccctggaattgctgggggtgatggtgag
ccaggtccccgaggtcagcaggggatgtttggacaaaagggtgatgagggtgcaagaggt
ttcccaggacctcctggtccaataggtcttcagggtctgccgggcccacctggtgaaaaa
ggtgaaaatggggatgttggtcccatgggtccacctggtcctccaggcccaagaggccct
caaggtcccaatggagctgatggaccacaaggacccccaggatccattggttcagttggt
ggtgttggagaaaagggtgagcctggagaagcagggaacccagggccccctggggaagca
ggcacaggcggccccaaaggagaaagaggagagaaaggagaagctggtgcacctggtgct
gctggacctcctggtgctaagggaccaccaggtgacgatggccctaagggtaacccgggt
cctgttggttttcccggagatcctggtcctcctggagaacctggccctgcaggtcaagat
ggtgttggtggtgacaagggtgaagacggagatcctggtcaaccgggtccacctggccca
tctggtgaggctggcccaccaggtcctcctggaaaaagaggccctcctggagcagcaggt
gcagagggaagacaaggagaaaaaggcgccaagggagaagcaggtgctgaaggcccacct
ggaaaaactggcccagttggtcctcagggacctgctggaaagcctggtccagagggtctt
cggggcatccctggccctgtgggagagcaaggtctccctggagctgcaggtcaagatggg
cctcctggtcctatgggacctcctggcttacctggtctcaaaggtgaccccggttccaag
ggtgagaagggacatcctggtttaattggcctgattggtcctccaggagaacaaggtgaa
aagggtgacagaggactccctggaactcaaggatctccaggagcaaagggggatggaggg
attccaggtcctgctgggcccataggtccccctggtcctccaggcttaccgggtcctcaa
ggtccaaagggtaccaaaggctctaccggacctgctggccagaagggcgacagtggtctt
ccagggcctcctgggcccccgggtccacctggagaagtcattcagcctttaccaatcttg
tcacccaaaaaaacaagaagacatgccgaaaacatgcaagcagatgcaggtgataatatt
cttgactactcagatggaatggaggaaatatttggttccctcaactccctgaaacaagac
atcgaacatatgaagtttcccatgggtacgcagactaacccagctcgaacatgcaaagac
ctgcaactcagccatcctgacttcccagatggtgaatactggattgatcccaaccaaggt
tgctcaggcgattccttcaaagtttactgtaatttcacatctggtggcgagacttgcatt
tatccagacaaaaaatctgagggagtaagaatatcatcatggccaaaggagaaaccagga
agctggtttagtgaatttaaaagaggaaaactgctttcctatttagatgttgaaggaaat
tccattaatatggtgcaaatgacattcctgaaactgctgactgcctctgctcggcaaaat
ttcacctacacctgtcatcagtcagcagcctggtatgatgtgtcatcaggaagttatgac
aaagcactacggttcttgggatccaatgatgaggagatgtcctatgacaacaaccctttc
atcaaagcactatatgatggctgtgcgtccagaaaaggctatgaaaaaactgtgattgaa
atcaatacaccgaaaattgatcaagtacctatcgttgatgtaatgatcaatgactttggt
gatcagaatcagaaatttggatttgaagttggtcctgtttgttttcttggctaa
DBGET
integrated database retrieval system
