Quercus lobata (valley oak): 115974881
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Entry
115974881 CDS
T07350
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115974881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115974881
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115974881
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
115974881
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115974881
NCBI-ProteinID:
XP_030951287
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All DBs
Position
2:19826077..19833206
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AA seq
344 aa
AA seq
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MKFHFTAPIKTYMHHTPLSLSLSLTLVFSVPLLRTSGSAFLFFAFKFSVSSVHYSTGMVG
LSLGEKHFIQGGIAQDIRSDGRKRLTYRPINVETGVIPQANGSARIRMGATDVISTVKAE
LGKPISLQPDKGKVSIYVDCSPTAAPMFEGRGGEELSTELSVALQRSLLGGKSGAGAGID
LSSLVVVEGKICWDLYIDCLVVCSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEQP
EVDISDEEFLQFDTSDIPVIVTLTKVGRHYIVDATTEEESQMSSAISISVNRKGHICGLT
KRGGAGLDPSIVLDMISVAKHVSEQLMNKLDSEIAAAEAGEDES
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcattttaccgcacctatcaaaacctatatgcatcacacgcctctctctctc
tctctctcactcacactcgtcttctctgtgcctctgcttcggacttcgggttctgcgttc
ttgttctttgccttcaaattttcagtcagttcagtccactactccactggaatggtggga
ctctctttgggagaaaaacacttcatacagggtggcattgctcaagacattcgttctgat
ggtcgaaaaagattaacttaccgtcctattaatgttgaaactggagttataccccaagca
aatggttcagcaagaatcaggatgggggccacagatgttatttctaccgtgaaggctgaa
cttggaaagccaatttcactacaaccagacaaaggaaaggtttccatatacgttgattgc
agtccaactgcagccccaatgtttgagggtagagggggtgaggagttgtccacagaactc
tcagttgctcttcaacgttctctcttgggtggtaaaagtggagctggggctggaattgat
ctctcatctctagtagttgtggagggaaaaatttgctgggatctttatattgattgtctt
gtggtttgttcagacgggaatctgctagatgccctaggtgctgccattaaggctgctttg
agcaatacaggcatcccgagggttcaagttgcagctggtgcatcaggtgatgagcaacca
gaggttgacattagcgatgaagaatttctgcagtttgacacatcagatatccctgtcata
gttacattaacaaaggtgggaaggcactatattgtagatgccactacagaagaggagtcc
caaatgagctctgccatttctatttctgtcaacaggaaaggacacatttgtgggctgact
aaaagaggtggtgcaggcctggatccaagcatcgttctggacatgatatctgtggcaaaa
catgtaagtgagcagctaatgaacaaattggattctgagatagctgctgctgaagccggt
gaagatgaatcatga
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