KEGG   Quercus lobata (valley oak): 115975320
Entry
115975320         CDS       T07350                                 
Name
(RefSeq) protein SEH1
  KO
K14299  nucleoporin SEH1
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    115975320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115975320
   04131 Membrane trafficking [BR:qlo04131]
    115975320
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     115975320
Membrane trafficking [BR:qlo04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    115975320
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_WDR5 ANAPC4_WD40 WD40_CDC20-Fz WD40_Prp19 EIF3I Beta-prop_Aladin Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR35_TULP_N WDR55 Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_WDR75_2nd Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 115975320
NCBI-ProteinID: XP_030951915
LinkDB
Position
2:complement(31089355..31097672)
AA seq 329 aa
MEKSLATFDNGTTCSAWNHCGQRLATGSADGTLSIFDSQDPASTSSSFTCTSKSRIHEAQ
AGIVRVVWVPPEYGDAVACICADGTMSLWEEVVEDAQPLKWKLCESFKSNSSKVLDIQFG
ISLTSLKMVAAHSDGHVKVFELLDSLEMKNWQLQAEIQNVIESVSTFGKASCISASISWN
PHRGESQDSSFVLGFNSDTPQLNSSKVWEFDQAHQRWLPVAELALPGDKGDQVHAVAWAP
NIGRPYEVIAVATLKGIAIWHLGLDPDLDGRLSVEKVALLSGHEGEVWQMEWDMSGMTLA
TTGNDGMVRLWQANLNGVWHEQAAFEPTS
NT seq 990 nt   +upstreamnt  +downstreamnt
atggagaaatctttggcgacctttgataatggcacaacttgctccgcctggaaccactgt
ggccagagactcgccactggctccgccgacggaaccctctccatattcgattctcaggac
ccagcttctacttcttcttccttcacctgcacttccaaatctaggatacatgaggctcag
gctggcattgtgagggttgtttgggttcctccggaatatggagatgcagttgcatgcatt
tgcgcagatggaaccatgtcattatgggaggaggtcgtagaagatgcgcaacctcttaaa
tggaagctgtgtgaaagctttaaaagcaattcatctaaagtgctggatatccaatttgga
atctctctgacaagtttgaaaatggttgctgcacattcagatggccatgtgaaagtcttt
gagctcctggattccttggagatgaagaattggcaacttcaggctgaaattcagaatgtt
attgagtcagtctctacatttggtaaggcttcgtgcatatctgcatctatatcatggaat
ccacacagaggtgaaagccaagattcaagtttcgttttgggtttcaattcagatacaccc
caactaaattcctccaaggtatgggaatttgaccaggctcaccaaagatggcttccagtt
gcagagttggcattgcctggggacaaaggtgatcaagttcatgctgtcgcatgggcacca
aacattggcagaccatatgaagtaattgctgttgcaactctcaagggaattgcaatatgg
catcttgggttggaccctgacctagatggaaggctctcagtggagaaagttgcattgctt
tctggtcacgaaggggaggtatggcagatggaatgggacatgagtggtatgaccttggca
accacaggaaatgatggcatggtacgattgtggcaggcaaacttaaatggagtttggcat
gaacaggctgcctttgagcccacttcatag

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