Quercus lobata (valley oak): 115992367
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Entry
115992367 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115992367
KO
K14315
nucleoporin NDC1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115992367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115992367
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115992367
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
115992367
NCBI-ProteinID:
XP_030972407
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Position
5:complement(54670890..54680567)
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AA seq
553 aa
AA seq
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MSIMSLTTPLEIVVKNRFLGFLIWQSIPSTAIFLFFKTFFISTLTSTTTTSTSKNPLLSF
APSLISLLTFFTFHLSQLLFSASLSLVSSPYPHSPAYPFELFLGLVRFFLVSDSSASVSP
DFRTRAKVSLSFVLFVAACAVSGFVGLVSVCWVKSSGFDGDWLIGKVGFIGFLLGLLYSL
FYVYKHRWILEFPIIQRPPFFSFKMGLPSAITRALKLSGVTYLFSAVLGSILLDQFKGQV
TVRKFIAEQIIFCIGSFAVFLCWELSHHLHRVLHTKRFTFAPPKGSAAAETNPSEHLLAA
LEDSNPNSLLQYLAYLDLCMVCENNVDTWRRAAFFEETGETYKRVIAVCLRPLEKLASKL
AEGLESSVDKNSQLSKQLLSPTDSRLESKYCKPLKNFQLCAWSARTVASLTACSHREDRF
GVAQLSGSNAAVISALLSCLLAVETFMGKKTNIQSPPHLMGPAGIKWATSSTGRIDGAVG
KKRGGPLHSKAYAIADVLRTSIYHVVSAFHDEMLNGAKAGLLEKDWIISGKPLFGTRELL
VQKLRLFLDFRAS
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataatgtccttgacaacaccactagaaatcgtagtcaagaaccgcttcttaggg
ttcctcatatggcagtctattccctccactgccatcttcctcttcttcaaaaccttcttc
atctccacactcacctccaccaccaccacttccactagtaaaaacccattactctctttt
gctccatcactcatttcactcctcactttcttcacattccacctctcacagctcctcttc
tctgcttctctctcactcgtctcctcgccctatccccattcccctgcttacccttttgag
ctctttctcggcctcgtccgattctttctcgtttcggactcttcggcttcggtatcgccg
gattttcggacccgggctaaggtttctctgagctttgtgttgtttgtggcggcctgtgct
gtgtctgggtttgtggggctagtgtctgtgtgttgggtcaaatccagtggctttgatgga
gactggctgattggcaaagtggggttcattggttttcttcttggtttgctttacagcttg
ttttatgtttataagcacagatggattttggagtttcccattattcagcgcccacctttc
ttcagcttcaagatggggcttccttcggctattactcgggctttgaagctttcgggtgtg
acttacctattttcagctgttctaggatcaattctgttggatcagtttaaaggtcaggtt
acagtgagaaagttcattgctgagcaaatcatcttttgcattgggagctttgcagtgttt
ctatgctgggaattaagtcaccacttacatcgggtgctacatacaaagaggttcacattt
gcaccacccaaagggtcggcagcagcagaaacaaatccaagtgagcatctccttgcagcc
ctggaggatagcaacccaaattctcttcttcaatatcttgcatatcttgatctctgtatg
gtctgtgagaataatgttgatacatggcgacgagctgccttttttgaagaaacgggtgag
acttacaaaagagttatagctgtatgcttgaggcctttggaaaagcttgcatcaaagttg
gctgaaggtttggaaagttctgttgacaaaaactcccagctgtccaaacagttactctca
ccaactgactcccgtctggaatccaagtattgcaaaccactgaaaaactttcagctatgt
gcatggtctgccaggacggttgcctcactgactgcctgctcacacagagaagataggttt
ggggttgctcagctctctggtagtaatgctgcagtcatttcagcactgttatcttgcctt
cttgccgttgagacattcatggggaagaagaccaacattcaatccccccctcatttgatg
gggccagctggaattaaatgggcaacatcaagcactggaagaatagatggtgcagtgggt
aagaagagaggtggccctctacattcaaaagcatatgccattgctgatgttttgaggacc
tcaatctaccatgttgtgtctgctttccatgatgaaatgctgaatggtgctaaagcagga
cttctcgagaaggattggatcatcagtggtaagcctctttttggcactcgtgagctcctg
gtgcagaaattgcggctttttctggactttcgagctagctaa
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