Quillaja saponaria (soapbark tree): O6P43_016411
Help
Entry
O6P43_016411 CDS
T09778
Name
(GenBank) Tetratricopeptide repeat protein
KO
K12600
superkiller protein 3
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_016411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_016411
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
O6P43_016411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_16
TPR_14
TPR_8
TPR_19
TPR_9
TPR_12
TPR_CcmH_CycH
TPR_7
ARM_TT21_C
BTAD
TPR_10
Motif
Other DBs
NCBI-ProteinID:
KAJ7967026
UniProt:
A0AAD7LZ62
LinkDB
All DBs
Position
6
Genome browser
AA seq
1189 aa
AA seq
DB search
MRETEEDNEAEQQQEQEQETLLKPLHESLDAHPDDASLHFELGHSLWIQGGEAKEKAAEH
FFISAKLNPQNGAAFKFLGHYYRRVSLDTQRSLKCYQRAVALNPDDSDSGEGLCDLLDEA
GKETLEVAVCRDASDKSPRAFWAFRRLGYLQVHQKKWSEAVQSLQHAIRGYPTCADLWQA
LGIAYQRLGRFTAAIKSYGRAIELNETLVFAWVESGNIYLMLGSFKKGVEQFQQALKTSP
QCVSAYYGLASGLLGLSKECLKLGAFKWGASLLKEAAEVATACICLVGNISCIWKLHGDT
QLMYAKCYPWMGEGQNLEISREAYNASILSWKQTCSLAVTSARCSYQRALHLAPWQANIY
SDIAISSDFVTSLSKTCGHDLSSWKLAEKMSVGALLLEGYNYEFWLALGYLSDYSALKQH
AIIRGLQLDISSAVAWSYLGRLYRKEGEEKLARQAFDCARSIDPALALPWAGMAANFDTR
ESAPDEAFESCLRAVQILPLAEFQIGLAKLALLNGHLSSLQVFGAIQLAVQRAPHYPETH
NLNGLVYEARKDYLSAATSYRIASHAINASSGSVPYSQIRDISINLARSLAMAGYAVDAL
CECEKLKKEGMLDGRGLQIYAFSLWQLGKNDLALSVVRNLAASVSTMEQISVSTPVSFIC
RLLYHISGLDAAITSILKMPKELFQSSKVSFIVSAIHALDRCNRLKPVVLSSCTFLTSYE
EITEMHFLIALGKLVEDGSKYGLGFQSGVSHLKRTLHIYPNSSLIRNLLGYLLLSSNELS
SIHVATRCCKLNPFDLPSHQGLKLSSDILGAGAVACYAVGNSSPKLSFPTCPNQCLNEPG
AIRHLQKYLHQQPWSCNARYLLILNYLQKAREERFPHHLCVMLERLISVALSNKLYSKTD
TSYQYQKFQLLLCASEISLQCRNVINCISHAKKASKIELADCYLFFAHLLLCRVHAMKGE
LLNLQREYAKCLELKTGFHIGWICLKLIKSQHKLQIDSNFLDFCFEECSKEGANSRNMWV
AIFKLVRSLISIRDWDFLSAEEFLAEACSLVGDESCFYLCHGAVCMELARQRPGLHFLSL
AQKSIAKAQKNSRIPLPLTSVLMAQAEGSLGSREKWARCLRLEWFTWPPEMRPAELFFQM
HLLAKNLNDSSDSLSNVEFCQSPQRWVLRAIHTNPSCLRYWKVLQVLVE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcgagaaacggaagaagataatgaagcagaacagcaacaagaacaagagcaagagact
cttctgaaacccttgcacgagtcgttggatgcccatccagatgacgcctcactgcatttt
gagcttggccactcgttgtggatacaagggggagaagcaaaggaaaaagcagcggagcat
ttttttatatcggccaaattgaaccctcagaatggagccgctttcaaatttctgggccat
tattaccgccgggtttccctcgatacacagagatcccttaagtgttaccagagggctgtt
gccctcaatcctgatgattccgactctggggaaggtttgtgtgatttattggacgaagca
ggaaaggagactttggaagtggcagtttgcagggatgcttctgacaagtcaccaagagct
ttttgggctttccgcagactgggttacctgcaggtccaccagaagaaatggtctgaagct
gtacagagtcttcaacatgcaatacgaggctatcctacatgtgctgatttgtggcaagct
ttgggaattgcttatcagcgactcggcagattcacagcagctataaagtcatatgggcga
gccatcgaattgaacgagacactagtctttgcttgggttgaaagcggaaatatctatttg
atgcttggttcctttaaaaagggagtagagcaatttcaacaagctctaaagacctcaccg
caatgtgtatctgcttactatggacttgcttcggggctgcttggcttgtcaaaggagtgt
cttaagttgggagcatttaagtggggagcttcgttattaaaggaagctgcggaagttgca
actgcatgtatttgtttagttggcaacatctcatgtatttggaagttgcacggtgatact
cagctcatgtatgcaaaatgttatccatggatgggggagggccagaatttggaaatttct
agggaagcatataatgcttccattctatcttggaagcagacctgctctttggctgtgaca
tctgcaagatgttcatatcaacgagcgttgcacttggccccttggcaagctaatatctac
agtgatatagcaatatcttcagattttgttacttcactgagcaagacttgcggacatgac
ttgagttcttggaagctcgcagagaagatgtctgtgggagccttgttacttgagggttat
aattatgagttttggctggcattgggatacttatctgattacagtgcattgaagcaacat
gcaataatcaggggattgcaattggatatttcttcagctgttgcttggtcatatcttggg
aggctctacagaaaagagggagaggagaaattggcaaggcaagctttcgactgtgctaga
agtattgaccccgcgcttgcattgccatgggcaggcatggcagccaactttgatacaagg
gagtctgcaccagatgaggcttttgagagctgtttacgagccgtgcagatactgcctcta
gcagaattccaaattgggctggccaagcttgctttgctaaatggacatctttcctcttta
caggtttttggagcaattcagctggctgtgcagcgtgcacctcactatccggaaactcat
aatttaaatggactggtgtatgaggctcgaaaagattatctgtctgcagctacttcttat
aggatagctagtcatgcaatcaacgctagttcaggaagtgttccatattcacaaatcaga
gacatatcaatcaatttggccagatcccttgcgatggcagggtatgcagttgatgctttg
tgtgaatgtgaaaaattgaagaaagaaggaatgcttgacgggagaggcttacaaatatat
gctttctctttgtggcaacttggtaaaaatgatttggccctctctgtggtaagaaatctg
gctgcaagtgtttctaccatggaacagatatctgttagtactcctgttagtttcatctgt
agattactctaccacatatctgggctggatgctgcaatcactagcattttgaaaatgcca
aaggaactgtttcaaagttcaaaagttagttttatagtgtctgctatacatgctctagat
cgatgtaatcgactcaagcctgttgtcttaagcagctgcacctttcttacatcttatgaa
gagatcactgaaatgcactttctgatagcacttggtaaactagtagaagatggatcaaaa
tacggtcttggatttcaaagtggagtttctcaccttaaaagaactcttcacatataccct
aacagtagtttgataaggaacctgcttggttatcttttgctatccagtaacgaactaagt
agcattcatgtggccacaagatgttgcaagctaaatccttttgatcttccaagtcatcaa
ggtttaaaattgagcagcgatatccttggtgctggagcagttgcatgctatgctgttggc
aatagcagtcctaagttgtctttcccgacatgtccaaatcaatgtttgaatgagcctgga
gctatacgacatctgcagaaatacttacatcagcaaccatggagttgtaatgctcgctat
ttgcttatactcaattatctacagaaggcacgtgaagagagatttcctcatcatctttgc
gttatgcttgagcgtctgatctcagtggctctttcaaataaattgtattctaagacagac
acatcttatcaatatcaaaagttccaacttctactttgtgcttcagagatcagtttacaa
tgtaggaatgtgattaactgtatcagtcatgctaagaaggcttctaaaattgagcttgcg
gattgctatctattctttgcacaccttcttttgtgccgcgtgcatgccatgaaaggtgaa
cttttaaaccttcagagagagtatgcaaagtgcttggagctcaagacaggttttcatatt
ggttggatttgtctgaaattgataaaatctcagcataaattgcaaattgattcaaatttc
ttagacttctgctttgaagaatgttcaaaagagggtgcaaattctaggaatatgtgggtg
gctatatttaaacttgtaaggagtttgatttccatacgggactgggatttcctttctgcg
gaagagtttctagctgaagcttgttctttggtgggcgacgagagctgtttctatctctgt
catggtgctgtctgtatggagcttgccaggcagcgtcctggtttgcatttcctatcactg
gctcaaaagagcattgccaaggctcaaaaaaattcacggattcccttacctcttacatca
gtgttgatggcccaagcagaaggaagccttggttccagagagaagtgggccagatgcctc
cgtcttgaatggtttacttggccaccagaaatgagacctgcggagctcttctttcaaatg
catttacttgctaaaaatttgaatgatagttctgactctctatccaatgtggagttctgt
caaagtcctcaaagatgggttcttcgtgcaatccatacaaacccttcttgtctgagatat
tggaaggttttgcaagtacttgtcgaatga
DBGET
integrated database retrieval system
