Quercus suber (cork oak): 112024589
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Entry
112024589 CDS
T05868
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112024589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112024589
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
112024589
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_11
TPR_2
TPR_1
TPR_17
TPR_14
TPR_16
TPR_19
TPR_12
TPR_8
TPR_CcmH_CycH
TPR_9
TPR_7
BTAD
TPR_10
Motif
Other DBs
NCBI-GeneID:
112024589
NCBI-ProteinID:
XP_023912978
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MEKTEEEEESKEVVLRRLEESVDAHPDDPSLHFDLGVRLWENEGEESNNKEKAAEHFVIS
AKLNPQNGAAFRYLGHYYSGVSLDTQRGLKCYQRAVSLNPDDLQSGEALCDLLDRDGKES
LEVAVCREASEKSPRAFWAFRRLGYLQAHQKKWPEAVQSLQHAIRGYPACPELWQALGLA
YQRLGRFTAALKSYGRAIELDNTNVFAMIESGNIFLMLGSFKEGVERFKQALEISPDSVS
ARYGLASGLLGLAKAWINLGAFRWGASLLEEASEVAKASTHLAENMSCIWKLHGDIQLAY
AKCFPWMEEGQGLEFDVETFNASIISWKKTCILAAISAKCSYQQALHLAPWEANIYTDIA
ITADLISSLTMSDGNDFNDWQLSEKMALGALLLEGDNYEFWVALGCLSDHNALKQHALIR
GLQLDVSLAVGWAYLGKLYREEGENQLAREAFDCARSIDPSLSLPWAGMSADFNARDPSP
DEAFESCLRAVQISPLAEFQIGLAKLALFSGHLSSSQVFGAIQQAIQHAPQYPESHNLYG
LVCEARFDYQSAAAAYRLARCAICSFPDSVPKSHTRDISLNLARSLCKAGNAIDALQECE
DLKKEGMLDVEGLQVYAFSLWKLDKRDLALSVLRNLAASVSAMEQTSVAAPVSFICRMLY
FMSGLDSAISSILKMPKELFQNSGISFIVSAIHTLDTCNRLEPVVSSSRHFLTSHEEITE
MHFLIALGKLVKHGTEFCLGFQSGVAHLRKALHMYPNSSLIRNLLGYLLLSSKEWNDAHV
ATRCCNVDSADYQNKGGLKSASEILGAGAVACYAVGNSNPKFSFPSCTYQCLNGHGAIQQ
LQKCLRREPWNHNIRYLLILNLLQKAREERFPHHLCIILKRLMSVALSSEVYSKTDKHYQ
KFQLLLCASEISLHSGNKTGCIDHAKNASKLLLPDAYLFFSHLQLCRAYAVEGDIINLQK
EYVRCLELKTDYHIGWICLKFVESQYPVQTDLNILDLCFKECSTERDYSWNMWMAIFNLV
FGLISIWNQDFLSAEEFLAQACSLAGAESSLFLCHGATCMELARQSRGSQFLSLAVKSLT
EAQKTSLIPLPVVSVLLAQAEGSLSSKEKWERNLRLEWFAWPPEMRPAELFFQMHLLARQ
SKSDPKSPSNVEFCQSPEKWVLRAIHTNPSCIRYWKVLQKLMT
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacggaagaagaagaagaaagcaaagaagttgttctgagacggttagaggag
tcagtggatgcacatcctgatgatccttctcttcactttgatctcggagtgaggttgtgg
gagaatgaaggagaagaatcgaacaataaggaaaaggcggcggagcactttgtaatatcg
gcgaaactaaaccctcaaaacggtgccgcgtttagatatttagggcattattactcagga
gtttcccttgatacccaacggggtctcaagtgttatcagagagctgtttcactcaatcct
gatgatctccaatccggggaagcgttgtgtgatttgttggatagagatgggaaggagagt
ttggaggtggcagtgtgcagagaagcttcggaaaagtcaccgagagctttttgggcattt
cggagattgggttacttgcaggcacatcaaaagaaatggcctgaagctgtacaaagtctt
caacatgccattcggggctatcctgcctgccctgagttatggcaagctttgggtcttgct
taccagcgtttgggcaggttcactgctgctcttaagtcttatgggcgagccatcgaattg
gacaatacaaatgtatttgctatgattgaaagtggaaacatctttttgatgcttggctcc
tttaaagagggagttgagcggtttaagcaagctctagagatttcacctgatagtgtgtct
gcacggtatgggcttgcttctgggctacttggtttggcaaaggcatggattaacttggga
gcattcagatggggagcttcattattagaggaagcatctgaggttgcaaaagcaagtacg
catttggctgagaatatgtcatgtatttggaagttacatggtgatattcagcttgcatat
gcaaagtgttttccatggatggaggaaggccagggtttagaatttgatgtggaaactttt
aatgcttctattatttcttggaagaaaacctgcattttagctgccatatctgccaaatgt
tcttatcagcaagctttgcacttggccccatgggaagctaatatctatactgacattgca
ataactgcagatcttatatcctccctaaccatgagtgatggaaacgacttcaatgattgg
cagctatcagagaagatggctttgggggctttgttacttgagggtgacaattatgagttt
tgggtagcattgggatgcttgtctgaccataatgcattgaaacaacatgccttaatcagg
ggattgcaattggatgtatctctagctgttggttgggcataccttgggaagctctatcgg
gaagagggtgaaaaccaattggcaagggaagcatttgattgtgccagaagtatagatcct
tcgctttcattaccatgggcaggcatgtcagcggattttaatgctagggatccttcacca
gatgaagcttttgaaagctgcttgcgagctgtgcagatatcacctcttgcagaattccaa
attggtcttgcaaagcttgctctgttttcagggcatctctcatcttcacaggtttttgga
gctatccagcaggccatccaacatgcacctcaatatcctgaatcccataatttatatggg
ctggtttgtgaggcaagatttgattatcaatctgctgctgctgcttatcggctagcacgc
tgtgcaatctgcagttttccagacagtgttccaaaatctcataccagagatatatcatta
aatttggcaagatctctttgtaaggcagggaatgctatagatgctttgcaggaatgcgaa
gatttgaagaaagaaggtatgcttgacgtggaaggccttcaagtatatgctttctcttta
tggaaacttgataaacgtgacttagctctttctgtgttgagaaatctggctgcgagtgtt
tctgcaatggaacagacatctgtggctgcccctgttagtttcatctgtagaatgctgtat
ttcatgtctggactagattcagcaataagtagtatactgaaaatgccaaaggaactcttt
cagaattcaggaattagttttatagtgtctgccattcatactcttgatacatgtaatcgg
cttgagccagttgtttcaagcagccggcactttcttacatctcatgaagagatcactgaa
atgcactttttgatagcacttggtaaactggttaaacatggaacagaattttgccttgga
tttcagtctggtgtggctcatcttagaaaagctcttcacatgtaccctaatagtagtttg
ataaggaacctactcggctatcttttgctatctagcaaggaatggaatgatgctcacgtt
gcaactaggtgctgcaatgtagacagcgctgactatcaaaataaaggaggtttgaaatca
gcaagcgaaatccttggtgctggagcagttgcttgttatgctgttggcaatagcaatccc
aagttttctttcccatcatgtacataccagtgcctgaatggacatggagctatccagcag
ttgcagaaatgcctgcgtcgagaaccgtggaatcataatatccgttacttgcttatactc
aatttactacaaaaggctcgtgaagagagatttcctcatcatctctgtattatactcaag
cggttaatgtctgtggccctttctagtgaagtttactctaagacagacaagcattatcaa
aagtttcagcttttactttgtgcttctgagatcagcttgcacagtgggaataaaactggc
tgcatcgaccatgccaaaaatgcttcaaagcttttgcttcctgatgcttatctcttcttt
tcacacttacaattatgtcgtgcctatgctgtagaaggtgatattataaatcttcagaaa
gagtacgtaagatgcttggagctcaagacagattatcatattggttggatatgtcttaaa
tttgtggaatctcaatatcctgtgcaaactgatttgaacatcttagacttgtgctttaaa
gaatgctcaacagagagggattattcatggaatatgtggatggctatatttaatctggtg
tttggtttgatttctatatggaaccaggatttcctttctgcggaagagtttcttgcacaa
gcttgttctttggctggtgctgagagctccctctttctctgtcatggtgccacctgtatg
gagcttgccaggcagtcgcgtggttcacagttcttatcacttgctgtaaagagtctcact
gaagctcaaaaaacttctctcattcccttacctgttgtctcggtgttgctggctcaggcc
gagggaagcctcagttctaaagagaagtgggagagaaacctccgtcttgaatggtttgct
tggccaccagagatgaggcctgcagaactcttttttcaaatgcatttgcttgcaagacaa
tcaaaatcagatcccaaatctccatccaatgtggagttctgtcagagtccggagaaatgg
gttcttcgggcgatccatacaaacccttcctgtattagatattggaaggttttgcagaag
cttatgacatga
DBGET
integrated database retrieval system
