Rahnella aquatilis HX2: Q7S_21000
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Entry
Q7S_21000 CDS
T01850
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q7S_21000 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raa03021
]
Q7S_21000 (rpoB)
03400 DNA repair and recombination proteins [BR:
raa03400
]
Q7S_21000 (rpoB)
Enzymes [BR:
raa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q7S_21000 (rpoB)
Transcription machinery [BR:
raa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q7S_21000 (rpoB)
DNA repair and recombination proteins [BR:
raa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q7S_21000 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AFE60409
LinkDB
All DBs
Position
complement(4603235..4607263)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVTYQIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDEIQRIEVPVEYIAGKVVSKD
YIDTNTGELIVPANMELSLDLLAKLSQSGHKTIETLFTNDLDHGAYMSETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGIVQYVDASRIVIRVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIQSALVAGGVEADKLGKLPRDRWLELSLTDEDKQNQLEQLAEQYDE
LKSEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVSK
LREFIQRAYDLGDDVRQKVDLTTFTDDEVLRLAENLKKGMPIATPVFDGAKETEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gttttggacattccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggccagtacggtctggaagctgcattccgttctgtattccctatcaag
agctacagcggtaactctgagctgcaatacgttagctaccgtcttggtgagcctgtattc
gacgttaaagaatgccagatccgtggtgtgacgttctccgcgccactgcgcgtaaaactg
cgcctggtaatctacgaacgtgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagctgcaccgtagtccgggcgtattcttcgacagcgat
aagggtaaaacccactcttcgggtaaagtgctttataacgcgcgtatcatcccttaccgc
ggttcatggttagatttcgagtttgatccgaaagacaacctgtttgtacgtattgaccgt
cgccgtaaattgcctgcgaccatcattctgcgtgcattaaattacacgactgaacagatc
cttgacctgttctttgacaaggtgacttaccagatccgcgacaacaagttgcagatggaa
ctggtacctgagcgcctgcgtggtgaaacagcttcctttgatatcgaagctgacggcaaa
gtctatgtagaaaaaggccgtcgcatcactgcccgtcatattcgtcagcttgaaaaagac
gaaattcagcgcatcgaagttcctgttgaatacatcgcagggaaagtggtctctaaagac
tacatcgacaccaataccggtgagctgatcgtcccggctaacatggaattgtctctggac
ctgcttgctaaactgagccagtccggtcacaaaaccattgaaacgctgttcaccaacgac
ctcgatcatggcgcgtacatgtccgagaccattcgcgtcgacccaaccagcgatcgcctg
agcgcactggttgagatctaccgaatgatgcgtcctggtgagccaccaacgcgtgaagcg
gcggaaagcctgtttgagaacctgttcttctctgaagatcgttacgacctgtctgctgta
ggtcgtatgaagttcaaccgttctctgttgcgtgatgaaatcgaaggttcaggtatcctg
agcaaagacgacatcattcaggtaatgaaaaagctgatcggcattcgtaacggccagggc
gaagtggatgatatcgaccacttgggcaaccgtcgtattcgttccgtcggcgaaatggct
gaaaaccaattccgtgttggtctggttcgtgttgagcgtgctgttaaagagcgtctgtct
ctgggcgacctcgacacactgatgcctcaggatatgatcaacgctaagccgatttcggct
gcggtgaaagaattcttcggctcaagccagctgtcacaatttatggaccagaacaacccg
ttgtccgagatcacgcacaagcgtcgtatctctgcattgggcccgggcggtttgacccgc
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtctgtctatgcacag
accaatgagtacggtttcctggaaaccccttaccgtcgcgtgcgtgatggtctggtgact
gatgaaatcaactatctgtctgccattgaagaaggcaacttcgtaatcgctcaggcgaac
tccaacctggacgaagaagggcgcttcattgaagacctggtcacttgtcgtagcaaaggc
gaatcaagcctcttcagccgcgatcaggttgactacatggacgtttccacccaacaggtt
gtatccgttggtgcttcattgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccgactctgcgcgctgataagccgctggta
ggtactggtatggaacgtgctgtagcggttgactccggtgtgactgccgtagccaaacgt
ggcggtattgttcagtacgtggatgcatcccgtatcgttattcgtgttaacgaagaagag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggcgagccaatcgagcgcggc
gacgtgctggcagatggtccgtctacagatcttggcgaactggctctgggtcagaacatg
cgtgtcgcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgaa
cgtgttgtgcaggaagaccgcttcacgaccatccatatccaggaactggcatgtgtgtcc
cgtgacaccaagttagggcctgaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggtgctgaagtgaccggtggt
gacattctggtgggtaaggtaacgcctaaaggcgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggcgtgtccggtacggttatcgacgtgcaagtcttcacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagccggtctgtttgcacgtatccagtctgcgctggtt
gctggcggtgttgaagctgacaagctgggcaaattgcctcgcgatcgttggttagaactg
tcactgactgacgaagacaaacagaatcagttggaacagcttgctgaacagtacgacgaa
ctgaaatccgagtttgagaaaaaactcgaagctaagcgtcgtaaaatcactcagggcgat
gatctggcaccaggtgtgctgaaaatcgttaaagtgtatttggccgttaaacgtcaaatc
cagcctggtgacaaaatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacgggactcctgttgatatcgtactgaacccg
ctgggcgttccatcacgtatgaacattggtcagattttggaaacccacctgggtatggcc
gcgaaaggtattggtgaaaaaatcaatgccatgctgaagaaacaggaagaagtttctaag
ctgcgcgagttcatccagcgtgcctatgatctgggcgacgacgtacgtcagaaagtggat
ctgaccacctttaccgatgacgaagtattgcgtctggctgagaacctgaaaaaaggtatg
ccaatcgcgacaccagtcttcgacggtgcgaaagagacagagatcaagcaactgcttgaa
atgggcggaatcccaacctctggtcagatcacactgtttgacggccgtaccggcgagcaa
ttcgagcgtcaggttaccgtcggctacatgtacatgctgaaactgaaccaccttgttgac
gataagatgcacgcgcgttctaccggttcttacagccttgttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tatggtgccgcatataccctgcaggaaatgctgactgttaagtccgatgacgtgaatggc
cgtactaagatgtataaaaacatcgtagatggcgatcatcgtatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgttctctgggtatcaacatcgagctggaa
gacgagtaa
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