Rodentibacter abscessus: THUN1654_14680
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Entry
THUN1654_14680 CDS
T10998
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rabs Rodentibacter abscessus
Pathway
rabs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rabs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THUN1654_14680 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rabs03021
]
THUN1654_14680 (rpoB)
03400 DNA repair and recombination proteins [BR:
rabs03400
]
THUN1654_14680 (rpoB)
Enzymes [BR:
rabs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THUN1654_14680 (rpoB)
Transcription machinery [BR:
rabs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THUN1654_14680 (rpoB)
DNA repair and recombination proteins [BR:
rabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THUN1654_14680 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
BFU60631
LinkDB
All DBs
Position
complement(1722348..1726376)
Genome browser
AA seq
1342 aa
AA seq
DB search
MGLSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKDPEGQQGLEAAFRSVFPIV
SNNGYTELQYVDYRLEDPEFDVRECQIRGSTYAAGLRVKLRLVSYDKESSSRAVKDIKEN
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILNLFFDKVTFEIADNQLLMA
LVPERLRGETASFDIEANGKVYVERGRRITARHIKALEKDKVTQVVVPTEYIVGKVAAKD
YVDLESGEVICSANGEISLEILAKLAQAGYNIIETLFTNDLDYGPYISETLRVDPTYDKI
SALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSAVGRMKFNRSLGIPEGVGSGIL
SNEDIIGVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKVINGQVT
EEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAK
RGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINR
GEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKD
LSDELEILEAGLFARVRNLLIAGGADAAQLDKLNRTKWLEQTIADEEKQNQLEQLAEQYE
ELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMLKQKQEVE
KLRSYIQKAYDLGNGSQKVDLSTFTDEEVLRLAENLRKGLPVATPVFDGAAEAEIKELLK
LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVGGNQHMDPGTP
ESFNVIMKEIRSLGLNIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgggtctctcctattctgagaaaaaacgaattcgtaaagacttcggcaaacgtccgcaa
gttttaaatgtaccttatttattaactattcaattagattcgtttgataaatttattcaa
aaagatcctgaaggtcagcaaggtttagaagccgctttccgttcagtcttcccaattgtt
agcaataatggctataccgaattacaatatgtcgattaccgtttagaggatcctgaattt
gatgtacgggagtgtcaaatccgaggttcaacttatgcggcaggcttacgggtaaaatta
cgtttagtgagctatgataaagaatcatcttcacgcgcagttaaagatattaaagagaat
gaagtatatatgggggaaatcccattaatgactgacaatggtacttttgtaatcaatggt
accgagcgtgttatcgtttcacagctacaccgtagtccgggcgtattttttgattccgat
aaaggtaaaacacattcttcgggtaaagtgctttataacgcacgtattatcccttaccgt
ggttcttggttagatttcgagtttgatccgaaagataatttatacgcacgtatcgaccgt
cgtcgtaaattgccggcaacgattattcttcgtgcattaggttataccacagaagaaatt
ttaaatttattctttgataaagttacttttgagatcgccgataatcaattattaatggcg
cttgtgccggaacgtttacgtggtgaaaccgcttctttcgatattgaagcgaacggtaag
gtatatgttgaacgcggtcgtcgtattaccgcacgtcatatcaaagcgttagagaaagat
aaagttactcaggttgttgtgccgaccgaatatattgtcggcaaagtggcagcaaaagat
tatgtggatttagaatccggtgaagtcatctgttctgctaatggtgaaatttctttagaa
attttggcaaaattagcacaagccggctacaacatcatagaaacattatttactaacgat
ttagactacggtccgtatatttccgagacattacgtgttgatccgacttacgataaaatc
agtgccttatacgaaatctaccgtatgatgcgtccgggtgaaccgccgacaccggaatct
tcagaagctttattcaataacttattcttctctgcggaacgctatgatttatcagcggta
ggtcgtatgaagtttaaccgctctttaggtattcctgaaggtgtgggtagcggtatttta
agcaatgaagatatcatcggcgtaatgcgtaagctcattgatattcgtaacggccgtggt
gaagtagatgatatcgaccacttaggtaaccgtcgtatccgttctgtgggtgaaatggcg
gaaaaccagttccgtattggtttggttcgtgtggaaagagcggttaaagagcgtttatct
ttaggcgatttagatgcgattactccacaggacttaattaacccgaaaccgatttctgcg
gcagtaaaagagttcttcggctcttcacaactttcgcaatttatggatcaaaacaacccg
ttatctgaagtaacgcacaaacgtcgtatttctgcattgggtccgggcggcttaacccgt
gaacgtgccggctttgaggtgcgtgacgtacacaatacccactatggtcgtttgtgtccg
attgaaacccctgagggtccgaatatcggtttgatcaactcactttctgcatttgcgcgt
actaatgattacggtttcttagaaacgccgtatcgtaaagttattaatggtcaagttacg
gaagaaatcgaatatttatctgcaattgatgaagcaaactatattattgcgcaggcaaac
tcaaatttagacgaaaacaaccgctttaccgatgcctttgtcacagcacgtggtgagcgt
ggtgaatcaggtttatataaaccggaagacattcactatatggacgtttcaacccagcaa
gtggtatctgtggcggcagcattaattccgttccttgagcacgatgatgcgaaccgtgct
ttaatgggtgcgaacatgcaacgtcaagcagtgccgacattacgtgcggataaaccgtta
gtgggtacgggcatggaaaaaccaatcgcccttgactccggtgtagcggttgttgcaaaa
cgtggcggtacggtgcaatatgttgatgcttcacgtattgttatcaaagtaaatgaagat
gaaacgattgccggtgaagcgggtattgatatttataatttaatcaaatacacccgttct
aaccaaaacacctgtatcaaccaaatcccttgtgtaaatttaggtgatccgattaatcgc
ggtgaagtattggctgatggtccgtcaacggatttaggtgaattagccttgggtcaaaat
attcgtgtcgcgtttatgccttggaacggctataactttgaagactcaatgttagtgtct
gagcgtgtcgttcaacaagatcgcttcacaacaattcacattcaagagctttcttgtgtc
gctcgtgatacgaaattgggagcggaagaaattaccgcagatattccgaacgttggtgaa
tccgcattaagcaaattggacgaatccggtattgtttatgtaggtgctgaagtgaaaggc
ggcgacatcttagtgggtaaagtgacccctaaaggtgaaacccaattaacgccggaagaa
aaattgttacgtgcaattttcggtgaaaaagcatctgatgtgaaagattcttcattacgt
gtgccaaatagcgtaaccggtacggttattgatgtgcaagtatttacccgtgatggcgtg
gaaaaagacaaacgtgcgttagaaattgaagaaatgcaattaaaagaagcgaagaaagac
ctttctgatgaattggaaatcttggaagcaggtttattcgcacgtgtacgcaatcttctt
atcgcaggtggtgcggatgcagcgcaattagataaattgaatcgcactaaatggttggaa
caaaccattgctgatgaagaaaaacaaaaccaattagagcagcttgcagagcaatacgaa
gaacttcgtaaagagtttgaacataaacttgaagtgaaacgtaagaaaatcatcaaaggc
gatgatcttgcaccgggcgtgttgaaagtggtgaaagtttaccttgcggtgaaacgccaa
attcaaccgggtgataaaatggcgggccgtcatggtaataaaggtgttatttcaaaaatc
aacccggttgaagatatgccatacgatgaaaacggtcagccggttgaaatcgtgttgaat
ccactgggcgtaccgtcccgtatgaatatcggtcagattctcgaaacccacttaggttta
gcggcaaaaggtattggtgatcaaatcaatgcgatgctcaaacaaaaacaagaagtggaa
aaattacgcagctatattcaaaaagcgtatgatttgggtaatggttcgcaaaaagtggat
ttaagtaccttcactgacgaagaagtattacgtttagccgaaaatttacgtaaaggttta
ccggtagcgacacctgtatttgacggtgcggctgaagcggaaatcaaagagttattaaaa
ctcggcggcttgccgacttcaggtcagatcacattgtatgatggtcgtaccggtgaaaaa
tttgagcgtccggtaaccgtaggttatatgtatatgctcaaattgaatcacttggttgat
gacaaaatgcatgctcgttcaaccggttcttatagccttgtaacgcaacaaccattgggc
ggtaaagcacaattcggtggtcaacgtttcggtgagatggaggtatgggcacttgaagca
tacggtgcggcttacaccttacaagaaatgttaaccgttaaatccgatgatgtgaacggc
cgtacgaagatgtataaaaacatcgtaggcggtaaccaacacatggatccgggtacgccg
gaatctttcaatgtaattatgaaagagatccgttcacttggtttaaatatcgagttagac
gaagagtaa
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