Rhizobium acidisoli: CO657_06670
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Entry
CO657_06670 CDS
T06438
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rad
Rhizobium acidisoli
Pathway
rad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CO657_06670 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rad03021
]
CO657_06670 (rpoC)
03400 DNA repair and recombination proteins [BR:
rad03400
]
CO657_06670 (rpoC)
Enzymes [BR:
rad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CO657_06670 (rpoC)
Transcription machinery [BR:
rad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CO657_06670 (rpoC)
DNA repair and recombination proteins [BR:
rad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CO657_06670 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QAS77778
UniProt:
A0AAE5WMW9
LinkDB
All DBs
Position
1337994..1342202
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDAKAKIVADTETL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASIGVRILGRT
ALDDIDHPITGERIVDAGRMILEPDVVEIEKAGIQSIRIRSALTCEIQTGVCAVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
ILRNSDGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVMKLSRGGDARFMLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcatctccggagaagatcctctcctggtcttacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctttgcggcaagtacaagcgtatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcacgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccatatctggttcctgaagtcg
ctgccgtcgcgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgtcctc
tattttgaaaactacatcgtcaccgagccgggcctgactgctctgaaggagcaccagctc
ctctcggaagaagagtacatgctggccgttgacgaatacggcgaagaccagtttaccgcg
atgatcggcgctgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgct
ggcgacctgcgctccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggaatcgggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcatcccgccggatctgcgtccgctggtgccgctcgacggcggc
cgtttcgcgacgtcggatctgaacgacctttaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctcatcgagcttcgtgcgcccggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgctgttcgacaacggccgtcgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagcctgaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggcctttgaa
cccaccctggtcgaaggcaaggcgatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaacggcgcgccg
atcatcgttccttcgcaggacatggttctcggcctttattacctgtcgatcctcaaccag
aacgaaccgggcgaaggcatggccttctccgatctcggcgaactgcatcacgccctcgaa
agcaaggtcgtgacgctgcacaccaagatccgcggccgtttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacgcctggccgtctgctcatcggcgaactg
ctgccgaagaacggcaaggtgcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttctcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggatgccaaggccaagatcgttgccgacaccgaaaccctg
gtgaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggtaaggccaccgaaaaggtcgccgaagagatgatggcccgc
attaaggctgtcgaattcgatgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgagccattccggcgcccgcggttctccgaaccagatgcgtcagttgggcggcatg
cgcggcctcatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacgcacggcgcccggaagggtctg
gcagacaccgccttgaagaccgccaactccggttacctgacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggcaccgaaaccggcctcaccatgacc
gccatcgtcgatgccggccaggtggttgcctcgatcggcgtccgcatcctcggccgcacg
gcacttgatgacatcgatcatccgatcacgggtgagcgcatcgtcgatgccggccggatg
atcctcgagcccgatgtcgtcgaaatcgagaaggccggtatccagtcgatccgcatccgc
tcggcgctgacctgcgaaatccagacgggcgtctgcgcagtctgctacggccgcgacctg
gcccgtggtacgcctgtgaacatgggtgaagccgtcggcgtcatcgctgctcagtcgatc
ggtgaaccgggcacccagctcaccatgcgtaccttccaccttggcggtacggcaaccgtg
gtcgaccagtcgttcctggaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
atcctgcgcaactccgatggcaacctcgtcgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggcgtggaacggtcttcgcagcgtgtcgcctacggttcgaagctgcat
gtcgacgaaggcgacaaggtcaagcgcggccagcgtctggccgagtgggatccttacacc
cgtccgatgatgaccgaagttgctggtaccgttcagttcgaagacctggtcgacggtctc
tcggttctggaagcgaccgacgaatccaccggcatcaccaagcgccaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggatgccagcggc
aatgtcatgaagctgtcgcgtggcggtgacgcccgcttcatgctctcggtcgacgctatt
ctgtcggttgagccgggcaccaaggtctcccagggtgacgttctcgcgcgttcgccgctg
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgagctcttcgaa
gcccgccgtccgaaggaccatgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgccgcgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtggaggctctggcctcctacctcgtcaacgagatccaggaagtctaccgcctgcagggt
gttgtcatcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggag
atcaccgatgcaggcgactcgacctatatcgtcggcgacaacgtcgaccggatcgagctc
gaagacgtcaacgatcacctgatcgagcagggcaagaagccggcctacggcgatccggtt
cttctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcatccttc
caggaaacgaccaaggtgctgacggaagctgcgatcgccggcaagaccgacggcctgcag
ggtctgaaggaaaacgtcatcgtcggccgtctcatcccggccggtaccggcggcaccatg
acccagatccgccgtatcgccacgtcgcgcgacgagctgatcctcgaagagcgccgcaag
ggcacgggtgctgccgttgccacgccgatgctgcaggacatggccgaaaaggctccggct
gcggaataa
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