Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_4242
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Entry
Rahaq2_4242 CDS
T01770
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rahaq2_4242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raq03021
]
Rahaq2_4242
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_4242
Enzymes [BR:
raq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rahaq2_4242
Transcription machinery [BR:
raq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rahaq2_4242
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rahaq2_4242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AEX54004
UniProt:
H2IVU9
LinkDB
All DBs
Position
complement(4516606..4520634)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVTYQIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDEIQRIEVPVEYIAGKVVSKD
YIDTNTGELIVPANMELSLDLLAKLSQSGHKTIETLFTNDLDHGAYMSETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGIVQYVDASRIVIRVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIQSALVAGGVEADKLGKLPRDRWLELSLTDEDKQNQLEQLAEQYDE
LKSEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVSK
LREFIQRAYDLGDDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKETEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gttttggacattccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggccagtacggtctggaagctgcattccgttctgtattccctatcaag
agttacagcggtaactctgagctgcaatacgttagctaccgtcttggtgagcctgtattc
gacgttaaagaatgccagatccgtggtgtgacgttctccgcgccactgcgcgtgaaactg
cgcctggtgatctacgaacgcgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagctgcaccgtagtccgggcgtattcttcgacagcgat
aagggtaaaacccactcatcgggtaaagtgctttataacgcacgtatcattccttaccgc
ggttcatggttggatttcgagtttgacccgaaagacaacctgtttgtacgtattgaccgt
cgccgtaaattgcctgcgaccatcattctgcgtgcattaaattacacgactgaacagatc
cttgacctgttctttgacaaggtgacttaccagatccgcgacaacaagttgcaaatggaa
ctggtacctgagcgcctgcgcggtgaaacagcttcctttgatatcgaagctgacggcaaa
gtctatgtagaaaaaggccgccgcatcactgcccgtcatattcgtcagcttgaaaaagac
gaaattcagcgcatcgaagttcctgttgagtacatcgcagggaaagtggtctctaaagac
tacatcgacaccaataccggtgagctgatcgtccctgctaacatggaattgtctctggat
ctgctggcgaaactgagccagtccggtcacaaaaccattgaaacgctgttcaccaacgac
ctcgatcatggcgcgtacatgtccgagaccattcgcgtcgacccaaccagcgatcgcttg
agcgcactggttgagatctaccgaatgatgcgtcctggtgagccaccaacgcgtgaagcg
gcggaaagcctgtttgagaacctgttcttctctgaagatcgttacgacctgtctgctgta
ggtcgtatgaagttcaaccgttctctgctgcgtgatgaaatcgaaggctcaggtatcctg
agcaaagacgacatcattcaggtaatgaaaaagctgatcggcattcgtaacggccagggc
gaagtggatgatatcgaccacttgggcaaccgtcgtattcgttccgtcggcgaaatggct
gaaaaccaattccgtgtaggtctggttcgtgttgagcgtgctgttaaagagcgtctgtct
ctgggcgacctcgacacgctgatgcctcaggatatgatcaacgctaagccgatttcggct
gcggtgaaagaattcttcggctcaagccagctgtcacaatttatggaccagaacaacccg
ttgtctgagatcacgcacaagcgtcgtatctctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtctgtttatgcacag
accaatgagtacggtttcctggaaaccccttaccgtcgcgtacgtgatggtctggtgact
gatgaaatcaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgaagaagggcgcttcattgaagacctggtcacttgtcgtagcaaaggc
gaatcaagcctgtttagccgcgatcaggttgactacatggacgtttctacccagcaggtg
gtatccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccgaccctgcgcgctgataagccgctggta
ggtactggtatggaacgtgctgtagcggttgactccggtgtgactgccgtagccaaacgt
ggcggtattgttcagtacgtggatgcatcccgtatcgttattcgtgttaacgaagaagag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggcgaacctatcgagcgcggc
gacgtgctggcagatggtccgtcaacagatctgggcgaactggctctgggtcagaacatg
cgtgtcgcgttcatgccctggaacggttacaacttcgaagactccatcctggtctccgaa
cgtgttgtgcaggaagaccgcttcaccaccatccatatccaggaactggcatgtgtgtcc
cgtgacaccaagttagggcctgaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggtgctgaagtgaccggtggt
gacattctggtgggtaaggtaacgcctaaaggcgaaacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcatctgatgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacggttatcgacgtgcaagtcttcacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagagatgcagctgaagcaggctaagaaagacctg
actgaagagctgcagatcctggaagccggtctgtttgcacgtatccagtctgcgctggtt
gctggcggtgttgaagctgacaagttgggcaaattgcctcgcgatcgttggttagaactg
tcactgactgacgaagacaaacagaatcagttggaacagcttgctgaacagtacgacgaa
ctgaaatccgagtttgagaaaaaactcgaagctaagcgtcgtaaaatcactcagggcgat
gacctggcacctggtgtgctgaaaatcgttaaagtgtatttggccgttaaacgtcaaatc
cagcctggtgacaagatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacgggacacctgttgatatcgtactgaacccg
ctgggcgttccatcacgtatgaacattggtcagattttggaaacccacctgggtatggcc
gcgaaaggtattggtgaaaaaatcaatgccatgctgaagaaacaggaagaagtttctaag
ctgcgcgagttcatccagcgtgcctatgatctgggcgacgacgtacgtcagaaagtggat
ctgaacacctttaccgatgacgaagtactgcgtctggctgagaacctgaaaaaaggtatg
ccaatcgcaacaccagtcttcgacggtgcgaaagagacagagatcaagcaactgcttgaa
atgggcggaatcccaacctctggccagatcacactgtttgacggccgtaccggcgagcaa
ttcgagcgtcaggttaccgtcggctatatgtacatgctgaaactgaaccaccttgttgac
gataagatgcacgcgcgttctaccggttcttacagccttgttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tacggtgccgcgtataccctgcaggaaatgctgactgttaagtccgatgacgtgaacggc
cgtactaagatgtataaaaacatcgtagatggcgatcatcgtatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgttctctgggtatcaacatcgagctggaa
gacgagtaa
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integrated database retrieval system
