KEGG   Rhodamnia argentea (silver malletwood): 115734339
Entry
115734339         CDS       T10595                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
rarg  Rhodamnia argentea (silver malletwood)
Pathway
rarg04142  Lysosome biogenesis
rarg04145  Phagocytosis
rarg04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:rarg00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    115734339
   04142 Lysosome biogenesis
    115734339
   04148 Efferocytosis
    115734339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rarg04131]
    115734339
Membrane trafficking [BR:rarg04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    115734339
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd Beta-prop_WDR3_1st Beta-prop_THOC3 zf_RING_Vps8 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_HPS5 Beta-prop_IFT122_1st zf_RING_Vps8_fungal WDR55 Beta-prop_EML_2 Beta-prop_WDR3_2nd zf-RING_2 TPR_YpiA Beta-prop_WDR11_2nd Beta-prop_WDR36-Utp21_2nd CCDC136_middle zf-RING_UBOX VPS18_RING_C PEP5_VPS11_N Beta-prop_WDR36-Utp21_1st BUD22
Other DBs
NCBI-GeneID: 115734339
NCBI-ProteinID: XP_048136312
UniProt: A0ABM3HI96
LinkDB
Position
6:21449440..21457659
AA seq 962 aa
MQMAPIPAENGVEGDDEREDEEADEDEEEEEEEEEEEEGEEEEEEPRLKYQRMGGSIPSL
LANDAASCVAVAERMIALGTHGGTVHILDFLGNQVKEFAAHTAAVNDLSFDTEGEYIGSC
SDDGSVVINGLFTDERMKSDYQRPMKAVALDPDYAKKASRRFVAGGLAGHLYFNMKKWLG
YKDQVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDSANDQRITFIERPRGSPRPELLLPH
LVWQDDTLLVIGWGTSVKIASIRTNPNKVANGTYNHIPASTTNQVDIVASFQTSYYISGI
APFGDSLVVLAYIPGEEDGEKDFSSSVPSRQGNAQRPEVRVVTWNNDELATDALPVHGFE
HYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHISWLLQHGW
HEKALAAVEAGQGRSELVDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHF
AHLRQLPVLVPYIPTENPRLRDTAYEVALVALATNPSFHHELLSTVKSWPRAIYSSSPVI
SAIEPQLNTSSMTDALKEALAELYVIDGQYEKAFSLYADLMKPEVFDFIEKHNLHEAIRE
KVVQLMKLDCKRAVPLFIQNRDLMTPSDVVSQLLKASDKSDSRHFLHLYLHSLFEVNPHA
GREFHDMQVELYADFDPKMLLPFLRSSQHYTLEKAYHICVRKELIKEQVFILGRMGNSKQ
ALAVIINNLGDIEEAVEFVSMQQDDDLWEELIKQCLDKPEMVGVLLEHTVGNLDPLYIVN
MVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHAVYLSNE
EDEARAKKKDSKAYQETEKSSSLRTTGVKSKTRGAARCCICFDPFSIRDVSVVVFFCCHS
YHASCLTDSTYTFSGKKGTKEASSDSMSHYDYDCEYDDEEDEDDDHKGTNRMRCILCTTA
AS
NT seq 2889 nt   +upstreamnt  +downstreamnt
atgcaaatggcgccgataccggcggagaacggcgtcgaaggggacgacgagagagaagac
gaggaagcagatgaggacgaagaggaggaggaggaggaagaggaggaggaggagggggag
gaggaggaggaagagccgaggctcaagtaccagaggatgggaggcagcatcccctcgctc
ctcgcgaacgacgcggcgtcgtgcgtcgccgtcgccgagcgaatgatcgcgctcggcact
cacggcgggaccgtgcacatccttgattttctgggcaatcaggttaaggaattcgctgcc
catacagctgctgtcaatgaccttagttttgacacagaaggtgaatatataggaagctgt
tcagatgatggatctgttgtgataaatggcctcttcactgatgagagaatgaagtctgat
tatcaacgtccaatgaaggctgttgctttagaccctgattacgccaaaaaagcatccaga
agatttgtagctggtggtttggcgggtcatttatattttaacatgaagaaatggttaggc
tacaaggaccaggttttgcactctggcgaaggtccaattcatgcagtgaagtggagaaca
agcttaattgcttgggccaatgatgctggcgtcaaagtttatgactcagccaatgatcag
cgtatcacatttattgagaggcccagaggaagcccgcgacctgagcttttactccctcat
ttagtttggcaggacgatacactgttagtcattggctggggaacatctgtgaaaattgca
tccatcagaactaatccaaataaagttgccaatggtacctataaccatattccagcctcc
actacgaatcaggtggatattgtggcatcattccaaacaagctattacatatcagggatt
gctccctttggtgactctttggttgttctagcttatataccgggggaagaagatggggag
aaggactttagcagcagtgtaccttcccgtcagggaaatgcacagagaccagaagtacgt
gtagtaacttggaacaatgatgaactggctacagatgccctacctgtgcatggttttgag
cattacaaggccaaggactactcccttgctcatgctcctttctcaggtagcagctatgct
gggggtcagtgggctgctggagatgagcctttgtattatatcgtctctcccaaagatgtg
gttatagcaaagcctagggatgctgaagatcacatatcttggcttctgcagcatggctgg
catgaaaaagctttagcagcagtggaagctggtcaaggacgcagtgaacttgttgatgag
gtaggatccaggtaccttgatcatttgattgtggaaaggaagtatgctgaagctgcttct
ttgtgtccaaaattgttgcgtggatctgcttcagcatgggagagatgggttttccatttt
gcacatctacgccagcttcctgttttggttccatatataccgacagaaaatccaaggttg
cgtgatacggcatatgaggttgccctggtggcattggcaacaaatccatctttccaccat
gagctattatcaaccgtcaaatcttggccacgagcaatatattcatcatcgcctgttatc
tcagccattgaaccacagctcaacacttcatccatgactgatgctctcaaggaggctctg
gcagagttgtatgtaattgatggccaatatgagaaagccttttcactctatgctgatctt
atgaagccagaggtgtttgacttcatcgaaaaacataacttacatgaagccattcgtgaa
aaggttgtccagttgatgaagctagattgcaaacgcgcagttcctttgttcattcaaaac
agggatttgatgacaccatccgatgtggtttctcaacttttaaaagccagcgataagagt
gattcaagacattttttgcatctatatctgcattccttgtttgaagtgaatcctcatgct
ggaagagagtttcacgatatgcaggtagagctctatgctgactttgatccgaagatgctg
cttccttttcttcgcagtagtcaacactacacattagaaaaggcttatcacatttgtgtt
agaaaagagctcattaaggagcaagtgtttatactgggaaggatggggaattcaaaacaa
gctcttgctgtcatcatcaataatttgggagacatagaagaggctgtagaatttgtgagc
atgcagcaagacgacgacctatgggaagaattaattaaacaatgtcttgacaaacctgaa
atggtgggtgtgttgctggagcacactgtggggaatctcgatccactttatatagtcaat
atggtgccaaatggtttggagatacctcggctaagggatcgtcttgtcaaaatcatcact
gattacaggactgaaacatctctcagacacgggtgcaacgatattcttaaggcggattgt
gttaacctcttggtaaagtactacaaggaagcaagacatgctgtgtatttgagcaatgaa
gaagatgaggctcgagcgaagaagaaagatagtaaggcttatcaggaaacagaaaaatcg
tccagcctgagaactacaggggtaaagtccaaaactaggggagctgcaagatgttgcatt
tgtttcgaccccttctccatacgagatgtgtccgtggtcgttttcttttgctgtcactcg
taccacgcgagttgtcttacggattccacatatacgtttagcggcaaaaaagggactaaa
gaagcttcttcagacagcatgtcgcattatgattatgattgtgagtacgatgatgaggaa
gatgaggatgatgaccataagggtaccaatcgcatgcgatgtatattatgtactactgcc
gccagttga

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