Rhodopirellula baltica: RB10487
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Entry
RB10487 CDS
T00134
Symbol
recQ
Name
(GenBank) recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB10487 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rba03019
]
RB10487 (recQ)
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB10487 (recQ)
Enzymes [BR:
rba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RB10487 (recQ)
Messenger RNA biogenesis [BR:
rba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB10487 (recQ)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RB10487 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RQC
RecQ_Zn_bind
HRDC
HTH_40
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAD78908
UniProt:
Q7UEX6
LinkDB
All DBs
Position
5685979..5688987
Genome browser
AA seq
1002 aa
AA seq
DB search
MALRRWDAIHSCPPNTHRTKDRMSSLASNSNPSIDPESLLPRFGLKEFRPGQRDVVDALA
AGTDCLCVMPTGGGKSLCYQLPSLAREGTTIVVSPLIALMKDQVDTLQRRGIQARLLNST
QSPGQQESVMEEMAAGKLDLIYVAPERLRNGRFLDVVPKANVSLLAVDEAHCVSEWGHDF
RPDYSRLGRFRDRYLGGVQTIGLTATATPTVRDDICELLNLKQPRVFVTGFARTNLRFTV
TPCNNDVAKQNALRDYLSKQPGAGIIYGATRKRCEEIAEWLPEKTGRKVGVYHAGMHPDE
RRRVQEAFMKGDLSAIVATNAFGMGIDKSDIRFVVHYNMPGSLEAYYQEAGRAGRDGEMS
QCLLLFAYSDRQIQEFFIENRYPSRETVKKVYEYLLSREEDPIELTLDQVREAIGVRDGS
EAIGTSETLLSKAGALRRLDASANQAVLRIDSDVPTLLDFLPREAKLKRQVMTAIEKIVG
PRRGEDVFVRLSYLATRAGVERVQLTRTLRELTKLKSFDYIPPFRGRAVHIMRRDVPFNQ
LKIDFEELARRKQAEYEKLDSVIQFARSTSCRQHVILTYFGDPNAENCGRCDHCDPAGDC
MPKVDPSKLGSNLTTAKTLGESGSVGALSEQAGIDMTALTTAIRVILSGVTRTHGRLGKN
LIAQMLAGSKNKKVTQLRLSRLSTYGMLTGLKQGELTDAMDSLLTVGLLDQKELNERRPT
VHMTDLGRQVMNGQVPLPPSLQLKFPLAKKLAKVASKIESGDVAEEEPGDIEPTVSAVMD
VPPKQPERPSPQQESSKTEASVVAAEPLTSDDAEQLLDQDLSDRIKRFRRKRSAALNVAP
HRILSESTIKRVIESKPANATQLEAVSGISSEFIEAYGSDLLELIANTLAEHEIDCPPKS
ATPPSNHSVEPSEPAESPAVDPQPSPAADRPDEKVVDPSAWRNEYWTWKLCRDGYTLQQI
SEIRGESTEALVDHLIAAARAGQTIDPAWADTPANAKRLRNL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcattgcgtcgctgggacgcgattcattcttgcccgccaaatacccaccgaacgaaa
gatcggatgtcgtctctcgcatccaattccaatccgtccatcgatcctgaatcgctgctg
ccacgctttggtctgaaagagtttcggcctggccaacgcgatgtcgtcgatgctttggcc
gcggggacggattgtctttgcgtgatgccaaccggcggcggaaaaagtctgtgttatcag
ctgccgtcgctggctcgcgaaggaaccaccattgtcgtttcgcctctgattgcgttgatg
aaggatcaggtcgacacgctccagcggcgaggcatccaagctcgattgctcaacagcacg
caatcgccggggcaacaagaatccgtcatggaggaaatggccgcggggaagttggatctg
atttatgtggctcccgagcgattgaggaacggtcgcttcttggatgtggttcccaaagcc
aacgtgagtttgttggcagtcgatgaagcacactgcgtgagcgaatggggccacgacttt
cgccccgattattcgcgtctcggacgattccgagatcgctatttgggcggcgttcaaacg
atcggattgaccgcgacggcaacgccgacggttcgcgacgacatttgcgagttgttgaac
ctgaaacaacctcgcgtgttcgtgaccgggtttgcgagaaccaatttgcggttcacagtc
acgccatgcaacaacgatgtcgccaagcaaaacgcactgcgtgattatctgtcgaagcag
cccggtgccggcatcatctatggcgcgacacgcaaacgttgcgaagaaatcgcggaatgg
ttgccggaaaagaccggacgcaaggtcggcgtgtaccacgctggcatgcatccggacgag
cgacgccgcgtgcaagaagcgttcatgaaaggagacttgtccgcaatcgttgcgaccaac
gcgtttgggatgggcatcgacaaatcggatatccggtttgtggtgcactacaacatgcca
ggttcgttggaggcgtactatcaggaagcaggccgagccggacgcgacggggagatgagc
caatgtcttctgttgttcgcttactccgatcgtcagatccaagagttcttcatcgagaac
cgttacccctcacgggaaacggtgaagaaggtttacgagtacctgctctcgcgtgaggaa
gacccgattgagctgacattggatcaggtgcgggaagcgatcggtgttcgcgacggcagc
gaagcgatcgggacttcggaaacgttgctatccaaggcaggtgctcttcgacgtttggac
gcgagcgccaaccaagcggtgctgcgaattgatagcgacgtgccaacactgcttgatttc
ttgccgcgtgaagccaagttgaagcgtcaggtcatgacggcgatcgagaagatcgttgga
cctcgccgcggagaagacgtctttgttcgattgagctacttggcaacacgggccggcgtg
gaacgggttcaattgacgcgaacgctgcgggaactgacgaagctgaagtcgttcgattac
atcccgccatttcgagggcgtgccgttcatatcatgcggcgggatgttccattcaatcag
ttgaagattgacttcgaagaattggccaggcgaaaacaagccgagtacgagaaattggat
tctgtgatccagttcgctcgttcaacttcgtgtcgtcagcatgtcatcctgacttacttt
ggcgatccgaatgcggaaaattgtggtcgatgcgaccactgcgatccggccggcgattgt
atgccaaaggtggatccgtcgaagctcggctcgaatttgacgacggcgaagacgctcgga
gagagtggttcggtaggggcgttgagcgagcaagccgggatcgatatgaccgcactgaca
accgccattcgtgtcatcctcagcggagtcacccgaacacacggacgtttggggaagaac
ctgatcgcccaaatgctcgccgggtcaaagaacaaaaaggtgacgcagttgcggctgagt
cgactgagtacctacggaatgctgacgggattgaagcaaggcgagctgaccgatgcaatg
gattcgttattgaccgtcgggttgttggaccagaaagaattgaacgagcggcgaccaacc
gtgcacatgacggacctcggtcgccaagtgatgaatggacaggtgccgttgccgccatct
ttgcaattgaagtttccacttgcgaagaagctggccaaggtcgccagcaagatcgaatcg
ggcgatgtcgccgaggaagagcccggtgacatcgagccaaccgtctcggcggttatggat
gttccgccgaagcaacctgagcgaccatcgccacaacaggaaagttctaaaaccgaagca
agcgtggtcgcggccgagccattgacctcggacgatgccgagcagttgctcgaccaagat
ctttcggaccggatcaagcgttttcgccgcaaacgatcggcggcgttaaatgtcgcgccg
caccggattctgtctgagtcaacgatcaaacgggtgattgaatccaagcctgccaatgcg
acgcaattggaagcggtgtcaggaatttccagtgagttcattgaggcgtacggcagcgat
ctactggagttgatcgccaatacactggcagagcacgagattgactgcccaccaaaatca
gccacgccgccttcgaaccattcggtggaaccgagcgagcctgccgagtcacccgctgtc
gatccgcaaccgagccctgctgctgatcgccccgatgaaaaggtcgttgatccatccgcg
tggcgaaacgagtactggacctggaaattatgccgggacggctacacgttgcagcaaatc
tccgaaattcgcggtgagtcaacggaagcgttggtcgatcacttgatcgctgcggcacgg
gcgggacagacgatcgatcccgcttgggccgacacgccggccaacgcaaagcgattgagg
aatttgtag
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