Rhizobium bangladeshense: J2J98_10880
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Entry
J2J98_10880 CDS
T07228
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rban
Rhizobium bangladeshense
Pathway
rban03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rban00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J2J98_10880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rban03019
]
J2J98_10880
03009 Ribosome biogenesis [BR:
rban03009
]
J2J98_10880
Enzymes [BR:
rban01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J2J98_10880
Messenger RNA biogenesis [BR:
rban03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J2J98_10880
Ribosome biogenesis [BR:
rban03009
]
Prokaryotic type
rRNA helicases
J2J98_10880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DRTGG
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSY86752
LinkDB
All DBs
Position
complement(2229817..2231775)
Genome browser
AA seq
652 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP
TLLEGSERFGAAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS
LERGAHIVVGTPGRLCDHIRRHALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER
RTLMFSATVPAAIAKLAKSYQRNAVRISTAAEEKQHVDIEYRALVVTPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTSRFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVSERDDERLLADPIFHEAPQEEEQALVQQLLSSHGAEKLAAAF
LRLYRTNHSAPEDLMEVSVYEDRSRKRRDNAAPYEPAQKGPREDFGPGVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAAASAESFQQALGPNKALERGIRVT
RLSGTPDFSRAPSPKPYAGRASRDEQPGETFRDERPKNKFGNGSSGGYAAAAENGGGERR
DAKPWSKKAGKPGYNGAKSDKPRYDKPKFEGGKHEGKSGAGPKGKFSKKKSG
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaactcaccccggtgcagcaggcgatgctcgatccggcacttgccgcttcggacgca
ttggtctcggcccagaccggctccggcaagaccgtcgcattcgggctggcgctggcgccg
acgctgctcgagggcagcgagcgtttcggtgctgccggcgcgccgcttgcactcgtcatc
gcgccgacgcgggagcttgccctgcaggtgaagcgtgagctcgaatggctttatgagatg
acgggcgcggtgatcgccagctgcgtcggtggcatggacatccgcagcgagcgccgctcg
ctggagcgcggcgctcatatcgtcgtcggcacaccgggccggctctgcgaccatatccgc
cgccacgcgctcgacatgtcggagctgaaggccgctgtgctcgacgaggccgacgagatg
ctcgacctcggtttccgcgaggacctggaatttatcctcgactcggccccggacgagcgt
cgcacattgatgttttcggccaccgtgccggctgcgatcgccaagcttgccaagagctac
cagcgcaatgcggtgcgcatcagcaccgcggccgaggaaaaacagcatgtcgatatcgaa
tatcgcgcgcttgtcgtcactccgagcgaccgcgagaacgcgatcatcaacgtgctgcgc
tattacgaggcgaccaacgccatcgtcttctgttcgacgcgcgcggccgtcaatcacctg
acctcacggttcaacaaccgcaatttctccgtggtggcgctgtcgggcgaactgacccag
aacgagcgcagccacgcgctgcaggcgatgcgcgatgggcgtgcccgcgtctgcatcgcg
accgacgtcgccgcccgcggcatcgacctgccgggcctcgatctcgtcatccacgccgac
ctgccgaccaatccggaaacgctgttgcaccgcagcggccgcaccggccgagccggacgc
aagggcattagcgccatgatcgtgccgctgaatgcccggcgcaaggccgagcgcctgctg
gagaatgccggcatctcggccgcctgggcgcggccgccgtctgccgaggaggtgagcgag
cgcgacgacgagcggctgcttgccgatccgattttccatgaagcgccgcaggaggaagag
caggccctggttcagcagcttctttccagtcacggtgccgaaaagctcgccgccgctttt
ctgcgcctttaccgcaccaaccattcggcgccggaagacctcatggaggtgtctgtctac
gaagaccgcagccgcaagcgccgcgacaatgccgcgccttacgagccggcacagaaggga
ccgcgcgaggatttcggtcccggcgtctggttctccgtctcggtcgggcgcaagcagaat
gccgagccgcgctggctgatcccgatgctctgccgcaacggcaacgtgacgaagcgcgag
atcggcgcgatcaagatgcagcccgaggaaacctatgtggagatcgccgcggcaagtgcc
gaaagcttccagcaggccctcggcccgaacaaggcgcttgaacgcggcatccgcgtaacg
cgactttccggcacgcctgacttcagccgagcgccatcgccgaaaccctatgccggcagg
gcatctcgcgacgaacagccgggcgagacgttccgcgacgagcggccgaaaaacaaattt
ggcaacggttcgagcggcggttatgccgcagcagccgagaatggcggcggcgaacgacgg
gatgccaagccttggagcaagaaggcgggtaagcctggctacaatggcgcgaaatccgac
aagcctagatatgacaagccgaaattcgagggcggcaagcatgagggtaagagtggcgcc
gggccgaaaggcaaattctcgaagaagaagtccggttga
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