Rickettsia bellii RML369-C: RBE_0216
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Entry
RBE_0216 CDS
T00339
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbe
Rickettsia bellii RML369-C
Pathway
rbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBE_0216 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbe03019
]
RBE_0216 (rne)
03009 Ribosome biogenesis [BR:
rbe03009
]
RBE_0216 (rne)
Enzymes [BR:
rbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RBE_0216 (rne)
Messenger RNA biogenesis [BR:
rbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBE_0216 (rne)
Ribosome biogenesis [BR:
rbe03009
]
Prokaryotic type
rRNA processing factors
RBE_0216 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF1125
Motif
Other DBs
NCBI-ProteinID:
ABE04297
UniProt:
Q1RK17
LinkDB
All DBs
Position
complement(255994..258075)
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AA seq
693 aa
AA seq
DB search
MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI
EYGMDKSGFLPFSEIHPNYYNLPASEKNFPINAFPEIVPPNIILDDEDEVRAATSYDPLI
DGEEIDLKAIEDLVESKFQSELNLEAADDIEIIQSDKEENIPQYKQYKVQDVIRKNQILL
VQVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRKISNGDERKRLKNILNKVVN
GDKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRKTI
RDMCDHNVKEVIIYGQEAYEDAAKFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIKLY
QPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLRDL
SGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFLET
NSSICSHCNGKGVVRADESNAMLILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQEI
KFIEEKYNIRLNFYSDPNATSDSYSIEKVKLLKKNNNNLNAGKPVIQNHSADYTEEEPKK
EQLRKNKYKWKTGNNNNVVSEEKKKVPEIKEVKDQVVSVVKEEVEITDDGVVVEEKPLPK
KTKRRYRNKKSNKNRPVANKESSVAEDSGGSEG
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagataataattgatgctaatttctcaaatgaaacaagagtagttttattg
ggacaaagcaataatatagaagatattgaatttcaaacaacaagaaaacaacaaaataaa
ggtaatatttatttagcaaaagtaacgagaatagagccatctttgcaagctgtgttcata
gaatatggtatggataaaagtggctttttgccttttagcgaaatacatcccaattattat
aatttacctgcatcagagaagaattttccaattaacgcatttcctgagatagtaccacct
aatatcattcttgatgatgaggatgaggtgcgggcagctacttcatatgacccattaatt
gatggtgaagaaatcgatctaaaggctatagaggatttagtagagagtaaatttcagtca
gagcttaatttagaagcagcagatgatattgaaattatccaaagcgataaggaagaaaat
attcctcaatataagcaatataaagtacaagacgtaataagaaaaaaccaaatattacta
gttcaagttactaaagaggagcgtggaaataaatgtgcagcttttactacttatgtatct
ttagcgggtaaatattgtgttttaatgcctaataaagcagcacaaaatggtatatctcgt
aaaatatcaaatggtgatgaaagaaaaagacttaagaatattttaaataaggtagtaaac
ggcgataagagtccttatagcgtaattatcaggacagcaggtagaggttgtagtactttg
gacctgaaaaaagattatagctatttatcaaggttatggaataaaatccgtaagagtact
gttaaatttccagctccttgctttattcatgaagaagatagcataatacgtaaaactata
cgtgatatgtgtgatcataatgtcaaagaggtcataatttatgggcaagaagcatatgaa
gatgcggcaaaatttatgcaagatttgctaccttcagagatgacaaaacttaaagagcat
aaaagtaaaactcctatatttactaagtttcaagtagaggaacaattaattaagctatat
cagcctgtggtaactttaccttcaggaggatatattgttattaatccaactgaagctctt
atttctatagatgtgaattccggtagatcaacttctgaaaaaaatattgaagaaacagcc
ttaaaaactaatttagaagcagcaaaagaaatagcaagacaagttaagcttagagattta
tcaggtcttatagttgttgatttcattgatatggatgaaacaaaaaatcgtaaaattatt
gagagatcttttaaagaattcttaagtcgtgatcgtgcacgtatacaaaccggtaatatt
agccagtttggattgcttgaattttcaaggcaaagattacgttcttctttcctagaaact
aattcttcaatttgttctcattgtaatggcaaaggtgttgttagagccgatgagtcgaat
gctatgctaatcttgcgtactattgaaaatgaaattttcgaagatagaattgatataata
aatgtttttgctaatgtttcttcggtgatttatctacttaataataaacgtcaggaaata
aagtttattgaagagaaatataatataaggctcaatttttattctgatcctaacgctaca
tctgatagctattcaatcgaaaaagtaaaattattaaagaaaaataataataacctcaat
gctggtaagccggtgattcaaaatcatagtgctgattataccgaagaagagcctaaaaaa
gagcagctacgtaaaaataagtataaatggaaaacaggcaataataataacgtcgtcagt
gaagaaaagaaaaaagtacctgaaataaaagaggtaaaagatcaggtagtaagtgttgta
aaggaagaagtagagattacagatgatggtgtagtagtagaagaaaaaccactaccaaaa
aagacaaaacgcagatatcgtaataaaaaatcgaataagaaccgtcctgtggctaataaa
gagagttctgtggcagaggatagcgggggcagtgaggggtaa
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