Rubrivivax benzoatilyticus: RBXJA2T_03272
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Entry
RBXJA2T_03272 CDS
T04092
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBXJA2T_03272 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbn03021
]
RBXJA2T_03272 (rpoB)
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_03272 (rpoB)
Enzymes [BR:
rbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBXJA2T_03272 (rpoB)
Transcription machinery [BR:
rbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBXJA2T_03272 (rpoB)
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBXJA2T_03272 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
EGJ09317
LinkDB
All DBs
AA seq
1373 aa
AA seq
DB search
MAQATPYTFTERKRIRKSFGKRESVLKVPYLLTMQSDSYVAFLQKDVPPQQRKPEGLQAA
FLSAFPIVSHNGFVEMKFLEYNIAKPPFDVRECQQRGLTFAAAVRAKLQMIIYDRESHPA
KVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILSHFFVFDNFR
LMDSGAQMEFVPERLKGEIARFDLTDKNGAVIVEKDKRITARHVRQLEQSGTTFVSVPED
FLVGRVIARNMVDPDTGEIVAKANDEVTESLLKKLRSAGIKDIQCLFTNELNQGAYISQT
LASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFYSEDTYDLSRVGRMKFNARVG
RDVPDGKMTLSNEDILDVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSGLAR
IEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETP
YRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDGEGRLIDELVSARENGESVLLSPERV
QYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGVERVAAV
DSGTVVTARRGGIVDYVDTNRIVIRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VRRGDHVGAGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTS
IHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGIVYIGAEVNPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLAGKVANGGPQKIAKGTTITKEYLATVEKYHW
FDIRPSEDEVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVAVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHL
GWAGKGIGHRIGDMLQQQARAAELREFLDELYNQSGGKTESLQDLSDDEIVEMAKNLQHG
VPFATPVFDGAHEEEIRGMLKLAYPDELAARKGLTATRTQATLHDGRTGEAFERPVTVGY
MHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQE
MLTVKSDDVNGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELERD
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcaaccccctacacgttcaccgagcgcaagcgcatccgcaagagcttcggc
aagcgcgagagcgtgctcaaggtcccctatctgctgacgatgcagagcgactcctacgtc
gccttcctgcagaaggacgtgccgcctcagcagcgcaagcccgagggcctgcaggccgcc
ttcctatcggccttcccgatcgtctcccacaacggcttcgtggagatgaagttcctcgag
tacaacatcgcgaagccgccgttcgacgtgcgcgagtgccagcagcggggcctgaccttc
gccgccgccgtgcgcgcgaagctgcagatgatcatctacgaccgtgagtcgcatccggcc
aaggtcgtcaaggagatcaaggagcaggaggtctacatgggcgaagtgcccctgatgacc
gactacggctccttcatcgtcaacggcaccgagcgtgtcatcgtcagccagctgcaccgt
tcgccgggcgtgttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctg
ttcagcgcccgcatcatcccctaccgcggctcctggctggacttcgagttcgacccgaag
gacatcctgtacttccgcgtcgaccgtcgccgcaagatgccggtgacgatcctgctcaag
gccatcggcctgaaccccgagcagatcctcagccacttcttcgtcttcgacaacttccgc
ctgatggattcgggcgcgcagatggagttcgtgccggaacgtctgaagggcgagatcgcg
cgcttcgacctgaccgacaagaacggtgccgtcatcgtcgagaaggacaagcgcatcacc
gcgcgccacgtgcgccagctcgagcagagcggcaccacgttcgtcagcgtgcccgaggac
ttcctcgtcggccgcgtcatcgcgcgcaacatggtcgacccggacaccggtgaaatcgtc
gccaaggccaacgacgaggtcaccgagtcgctgctgaagaagctgcgctcggccggcatc
aaggacatccagtgcctgttcacgaacgagctgaaccagggcgcgtacatcagccagacg
ctggcctctgacgagaccgccgaccagctcgccgcgcgcgtggcgatctaccgcatgatg
cgccccggcgagccgccgaccgaggacgccgtcgaagcgctgttccatcgcctgttctac
agcgaggacacctacgacctgtcgcgcgtcggccgcatgaagttcaacgcccgcgtgggt
cgcgacgtgccggacggcaagatgacgctgtccaacgaggacatcctcgacgtcgtcaag
atcctcgtcgacctgcgcaacggcaacggcgaagtcgacgacatcgaccacctgggcaac
cgccgcgtgcgctgcgtcggcgaactggccgagaaccagtaccgctcgggcctcgcgcgc
atcgagaaggccgtcaaggaacgcctcggccaggccgagaccgaagccctgatgccgcac
gacctgatcaactccaagccgatcagcgcggcgctcaaggagtttttcggggcgagccag
ctctcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgtcgtgtc
tcggccctgggcccgggcggtctgacgcgcgagcgcgccggcttcgaagtccgcgacgtg
cacccgacccactacggccgcgtctgcccgatcgagacgccggaaggcccgaacatcggc
ctgatcaactcgctggcgctgtacgcgcaactcaacgagtacggcttcctggagacgccg
taccgccgcgtcgtcgacggcaaggtcaccgaccagatcgactacctgtcggccatcgag
gaaggcaagtacgtcatcgcccaggccaacgcgacgctggacggcgaaggccgcctgatc
gacgaactggtctcggcgcgcgagaacggcgaatcggtgctgctgtcgccggagcgcgtg
cagtacatggacgtggcgccgacgcagatcgtctcggtcgcggcctcgctcgtgccgttc
ctcgagcacgatgacgcgaaccgcgcgctgatgggcgccaacatgcagcgccaggccgtg
ccgacgctgcgtccggagaaggcgctggtcggcaccggtgtcgaacgcgtcgccgcggtc
gactcgggcaccgtcgtcaccgcccgccgcggcggcatcgtggactacgtcgacaccaac
cgcatcgtcatccgcgtcaacgacgacgagacggtggccggtgaagtcggcgtcgacatc
tacaacctgatcaagtaccagcgttcgaaccagaacacgaacatccaccagcgcccgatc
gtgcgccgcggcgaccatgtcggcgccggcgacgtcgttgccgacggtgcctcgaccgac
ctgggcgagctcgcgctcggccagaacatgctggtcgcgttcatgccctggaacggctac
aacttcgaagactcgatcctgatcagcgagcgtgtcgtcgccgacgaccgctacacctcg
atccacatcgaggaactggtcgtgatggcccgcgacaccaagctgggctccgaggaaatc
acgcgcgacatccccaacctgtccgagcagcagctggctcgcctggacgagtcgggcatc
gtctacatcggcgccgaggtcaacccgggcgacgtgctggtcggcaaggtcacgcccaag
ggcgagacgacgctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcc
tccgacgtgaaggacacctcgctgcgtgtcgaccagggcaccagcggtaccgtcatcgac
gtgcaggtcttcacccgtgaaggcatccagcgcgacaagcgcgcccagcagatcatcgac
gacgaactgaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaggccgac
gccttcgaccggatcgagaagctgctggccggcaaggtcgccaacggcggcccgcagaag
atcgccaagggcacgaccatcaccaaggaatacctggcgacggtcgagaagtaccactgg
ttcgacatccgcccgtccgaggacgaggtcgccaaccagctcgagtcgatcaagaactcg
ctcgagcagacccgccacagcttcgacctcgcgttcgaagagaagcgcaagaagctgacg
caaggcgacgagctgcccgccggcgtgctgaagatggtgaaggtctacctcgccgtcaag
cgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggtgtcgtgtcc
aagatcgtcgcggtcgaggacatgccctacatggccgacggcacgccgtgcgacatcgtg
ctgaacccgctgggcgtgccctcgcggatgaacgtcggccaggtcctcgaagtgcacctg
ggctgggccggcaagggcatcggccatcgcatcggcgacatgctgcagcagcaggcgcgt
gccgccgaactgcgcgagttcctcgacgagctctacaaccagtccggcggcaagaccgaa
tcgctgcaggacctgagcgacgacgagatcgtcgagatggcgaagaacctgcagcacggc
gtgccgttcgcgacgccggtgttcgacggcgcgcacgaggaggagatccgcggcatgctc
aagctcgcctacccggacgagctggcggcgcgcaagggcctcaccgccacgcgcacccag
gccacgctgcacgacggccgcaccggcgaagccttcgagcgtccggtcacggtcggctac
atgcacgtgctgaagctgcaccacctggtcgacgacaagatgcacgcccgctcgaccggc
ccgtacagcctggtcacgcagcagccgctgggcggcaaggcgcagttcggtggccagcgc
ttcggtgagatggaagtctgggcgctcgaggcctacggcgccagctacatcctgcaggag
atgctgaccgtcaagtccgacgacgtgaacggccggaccaaggtctacgagaacatcgtc
aagggtgagcactcgatcgaggccggcatgccggaatcgttcaacgtgctggtcaaggaa
atccgttcgctcggtatcgacatcgagctggagagggattga
DBGET
integrated database retrieval system
