Roseiflexus castenholzii: Rcas_0856
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Entry
Rcas_0856 CDS
T00585
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rcas_0856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rca03019
]
Rcas_0856
Messenger RNA biogenesis [BR:
rca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rcas_0856
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
DUF4407
T7_gp14
Sigma70_r4_2
KH_KhpA-B
KH_2
UPF0242
FliD_C
Motif
Other DBs
NCBI-ProteinID:
ABU56972
UniProt:
A7NHM5
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Position
1121758..1123365
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AA seq
535 aa
AA seq
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MFEPVATARQRAVACCTFTTEQEDVVQWLVWALPALVIGLAIGAGIGILIYKNSVQSQIR
QIEAEARLQLEATRSEQKDLILRATDEALRLRTEAEAQIREARAALAKQEERLQRKEENL
DRKIEGLERRERQLQQRERQMEQLHQEAEHLRQQQRAELERISALSQEEARAIILKRVED
ETRDEAARRIREIEKTMHEEADKLARKVISMAIQRCASDYVAEVTVSTVALPSEELKGRI
IGREGRNIRAFEQLTGVDIIVDDTPEAVTLSCHDPVRREVARLALIKLLKDGRIHPTRIE
EVVHKTQQEVDQVMREEGERVAYEANVQGLHPDLIKLLGRLKYRTSYGQNVLQHSLECAL
LAAHIAAEIGANINVAKTAALLHDIGKAVDHEVQGPHALIGAEIARRLGKSPAIVHAIAA
HHNDEEPQTVEAWLVQAVDAISGGRPGARRETLDLYIKRLEALETVATSFSGVQRAFAVQ
AGREVRVMVQPDAIDDLGSIHLARDVAKKIEESLQYPGQIKVTVIRETRAVDYAR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcccgtagccacagcccggcagagggctgtagcatgctgcacctttacaact
gagcaggaggacgttgtgcaatggctcgtatgggccttgcctgcgctggtcatcggactt
gcaatcggcgcaggcatcggcattcttatctacaaaaacagtgttcagagccagatacgg
cagatcgaggcggaagcccgattgcaactggaggcgacgcgatctgagcagaaagatctc
attctgcgcgcaactgatgaggcgctccggctccgcaccgaagccgaggcgcagatccgc
gaagcgcgcgcggcgctggcaaagcaggaagaacggttgcaacgaaaggaggagaacctc
gaccgcaaaatcgaggggcttgagcgacgcgaacggcagcttcagcaacgtgagcgtcag
atggagcaactccaccaggaagccgaacatctgcggcagcaacagcgcgcggagcttgag
cgcatttccgcattgagccaggaagaagcccgcgccatcattctgaagcgcgttgaagac
gagacgcgcgacgaagcggcgcgtcgcattcgtgaaattgaaaagacgatgcacgaagag
gcggacaaactggcgcggaaagtgatcagcatggccattcagcggtgcgcttcggactat
gtagccgaagtgaccgtttcgaccgtggcgctcccgagcgaggagttgaaggggcgcatc
atcgggcgcgaagggcgaaacattcgcgcattcgagcaattaaccggggttgatattatt
gtcgatgataccccggaagcggtcacgctgtcgtgccacgatccagtgcggcgggaagtg
gcgcgcctggcgctgatcaagttactcaaggatgggcgcatccatccgacgcgcattgaa
gaggtcgtccataaaacgcagcaggaagtcgatcaggttatgcgcgaagagggcgagcga
gtcgcctacgaagcgaatgtccagggtctgcaccctgatctgatcaaactgctggggcgc
ctgaaatatcggacgagttacgggcagaacgtactccagcactcgctggagtgcgcgctg
cttgcggcgcatattgctgctgagatcggtgcaaacatcaatgtggcgaaaactgctgcg
ttgctgcacgacatcgggaaggcagtcgaccatgaggtgcagggaccgcacgcattgatc
ggagctgagattgcgcgtcgccttgggaaatcaccggcaatcgttcacgcgattgccgct
catcataacgatgaagaaccgcaaaccgtcgaagcctggctggttcaggctgttgacgcc
atctccggcgggcgccccggagcgcgccgcgagacgctcgacctctacatcaagcgcctc
gaagcgcttgaaacagtggcgacgtccttttctggcgttcaacgcgcctttgctgttcaa
gccggacgcgaagtgcgggtgatggtgcaacccgacgctatcgatgatcttggcagtatt
catcttgcccgtgatgttgccaaaaagatcgaagagagtttgcagtatccgggacagatc
aaggtgacggtcatccgcgagacgcgcgcagtggactatgcgcgctga
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