Roseiflexus castenholzii: Rcas_1598
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Entry
Rcas_1598 CDS
T00585
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rca
Roseiflexus castenholzii
Pathway
rca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rcas_1598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rca03021
]
Rcas_1598
03400 DNA repair and recombination proteins [BR:
rca03400
]
Rcas_1598
Enzymes [BR:
rca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rcas_1598
Transcription machinery [BR:
rca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rcas_1598
DNA repair and recombination proteins [BR:
rca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rcas_1598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABU57691
UniProt:
A7NJM1
LinkDB
All DBs
Position
complement(2055798..2059535)
Genome browser
AA seq
1245 aa
AA seq
DB search
MRRAAPRRLTSKSEVPMPPLTESVVLQPLIMPNDIGADSLHRSKIERYSFARISDAIELP
KLIETQLKSFEWFRKEGLRELFDEISPITDFTGKNMELRFLDYHFGEPRYNEHECRERGI
TYSAPIRVNVQLRILSTGELKESEIFLGDFPLMTENGTFVINGAERVVVSQLIRSPGVYF
KEEKDPTSGRSLHSAKLIPSRGAWLEFETNKRDVISVKVDRKRKIPVTILLRAVLGWKAN
PDGSGQWAPDTELDTRGRDEDVLELFTHVETGEHQYIRVTLDKDPARHAKEALLELYKRL
RPGDPPTLDNARNLIEALLFNPRRYDLSRVGRYKLNKNLWEKDTRLEVRSQAPDLKVRVL
LPDDIFKIVERIIQLNNETPGLRADDIDHLGNRRVRTVGELIQQQFRVGLLRMERVIKER
MSLQDPETATPNALINIRPVVAAMREFFGGAQLSQFMDQTNPLAELTHKRRLSALGPGGL
SRDRAGFEVRDVHHSHYGRICPVETPEGPNIGLIGTMSTYAQVNEMGFLETPYRKVYREV
PNASEWERQGLLLRDVRDLRTGELIAVRGTRVDAAVARRIAVSLLRGQILREDIVDPKTG
EVIASTGQEINRAIAERIVETPLRTIKIRPIVSQEVDYLSADEEDRFVIVQANAPLDEHN
RFLEGTVSVRYAGDFDDVPIERVDYMDVSPKQVVSVSTALIPFLEHDDANRALMGSNMQR
QAVPLLRPDAPIVGTGMEYVAARDSGQVVVAKADGVVLSATGDEIIILEDDGNERSYRLR
KFMRSNQDTCINQRPSVSRGQRVRKGDIIADSSSTDNGELALGQNVLVAFMPWEGGNFED
AILVSERLVREDIFTSIHIEKYEVEARDTKLGPEEITRDIPNVGQESLRNLDDRGIIYIG
AEVQPNDILVGKITPKGETDLTAEERLLRAIFGEKAREVKDSSLRVPNGVRGKVIDVKVF
TRNDDVELPVGVNQRVDVLLCQKRKISAGDKMAGRHGNKGVVSRILPIEDMPFLPDGTPV
DIILNPIGVPSRMNIGQILETHLGWAAARLGYRVATPVFDGASETEIKEWLKRADLPPDG
KITLYDGRTGEPFDHPVTVGYIYMMKLAHLVEDKIHARSTGPYSLVTQQPLGGKAQFGGQ
RFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKTYEAIVKGEPIQEAGVPESFKVLIK
ELQSLGLSVEVLSADETPVELTDDVDSDLAALDGINLSGMERGEF
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagacgagcggctccccggcgactgacaagcaagagcgaggtgccaatgcccccgttg
accgaaagtgttgtgctccagccattgattatgccgaatgatattggcgccgacagcctg
catcgcagcaagatcgagcgttattcattcgcgcgcatttcagacgcgatcgagttgccc
aaactgatcgaaacgcagttgaaaagtttcgaatggttccgtaaagaaggattgcgtgag
ctgttcgacgagatatcgccgattactgattttaccggcaaaaatatggaactgcgattc
ctcgattaccatttcggggaaccgcgttataacgaacacgagtgccgcgagcggggaatc
acctattcggcgccgattcgcgtgaatgtgcagttgcgcattctgagcaccggggaatta
aaagagagtgaaatctttctaggcgatttcccgttgatgacggaaaatggaacgttcgtc
attaatggcgccgagcgggtggtggtttcgcagttgatccgctcgccaggggtctatttc
aaagaagaaaaagaccccacatccgggcgaagcctgcactcggcaaagttgatcccgagc
cgtggcgcctggcttgagttcgagacaaataagcgcgatgtgatctccgtcaaggttgat
cgcaagcgcaagattccggtaacgatcctgttgcgcgccgttcttggatggaaggcgaac
cccgatggcagcgggcagtgggcgccggataccgaactcgacacgcgcgggcgcgatgag
gatgtgttggaactgttcacgcacgtggaaaccggcgaacatcagtacatccgcgtaacg
ctcgataaagacccggcgcgacacgccaaagaggcgctcctggagctgtataagcgcctg
cgcccgggcgatccgccaacgctcgataatgcgcgcaatctgatcgaggcgctgctcttc
aatccgcgacgctacgatctgtcgcgggttgggcgctataaactgaacaagaacctgtgg
gagaaggatactcgcctcgaagtgcgcagtcaggcgccggatctgaaggtgcgcgtgctg
ctgcccgatgatatcttcaagatcgttgagcgaattattcaactgaacaatgaaacaccc
ggtctgcgcgccgatgatatcgatcacctcggcaaccgccgcgtgcgtaccgtcggcgaa
ctgatccagcagcagttccgcgtcggtctgctgcggatggagcgcgtcatcaaggagcgt
atgtcgctgcaagaccctgagaccgcaacgcccaacgcgctgatcaatattcgcccggtc
gtcgcggcaatgcgcgagttcttcggcggagcgcaactctcgcagttcatggatcagacg
aatccgcttgcagaattgacccataaacgccgcctttcagctctcggtcccggcggtctc
agccgcgaccgcgccggctttgaggtgcgcgacgttcatcactcgcactatgggcgcatc
tgcccggtggagacgccggagggtccgaatatcggtctgatcggaacgatgtccacctat
gcgcaagtcaatgagatggggtttctggagacgccgtatcgcaaggtgtaccgcgaggtg
ccgaacgcgagcgaatgggagcgtcaggggttgctcctgcgcgatgtgcgcgacctgcgc
accggcgagttgatcgcggtgcgtgggacacgtgtcgatgccgccgtggcgcgccgcatt
gcggtttcgttgctgcgcgggcagattctgcgcgaggatatcgtcgatccgaagaccggc
gaggtgattgccagcaccggacaggaaattaaccgcgcgattgcggaacggatcgtcgaa
acgccactgcgaacgatcaagatccgcccgatcgtgtcgcaggaagtcgattatctctcc
gccgacgaggaagaccgatttgtcattgtgcaggcgaatgcgcccctcgatgagcacaat
cgcttcctggaaggcacggtgtcggtgcgctatgcgggcgatttcgacgatgtgccgatt
gagcgcgtcgattatatggatgtgtcgcccaagcaggtggtaagcgtctcgacggcgctg
atccccttcctggagcacgacgatgccaaccgcgcgctgatggggtcgaatatgcagcgc
caggcggtgccgcttctccgccccgatgcgccaatcgtcggcaccggcatggagtatgtg
gcggcgcgcgatagcgggcaggtggtggtcgccaaagccgatggcgtggtgctctcggca
accggtgatgagatcatcatccttgaagacgacggcaatgagcgatcatatcggctgcgc
aagtttatgcgctcgaaccaggatacctgcatcaatcagcgtccaagcgtctcccgtggt
cagcgcgtccgcaaaggcgacatcattgcggatagttccagcaccgataatggcgaactg
gcgctcgggcagaatgtgctggtggcgttcatgccgtgggaaggcggcaattttgaggac
gccattctggtctcggagcgcctggtgcgcgaagatatcttcacctcgatccatatcgag
aagtatgaagtcgaagcgcgcgataccaaactcgggcctgaggagatcacgcgcgatatt
cccaacgtcgggcaggagagcctgcgcaacctcgatgatcgcgggattatctatattggc
gctgaggtgcaaccaaatgacattttggtggggaagatcacgccgaaaggcgaaaccgat
ctgacggcggaagagcgcctgctgcgcgcgatctttggcgagaaggcgcgcgaggtgaag
gattcgtcgctgcgtgtgccaaacggtgtgcgcgggaaggtgatcgatgtgaaggtcttc
acccgcaatgatgatgtcgaactgccggtcggcgttaatcagcgcgtcgatgtgctgctc
tgccagaaacgcaagatttcggccggcgacaagatggcgggacgtcacggcaataagggt
gtggtcagccgtatcctgccaatcgaggatatgccgttcctgccggatgggacgccggtt
gacatcattttgaatccgatcggcgtgccaagccgtatgaatatcggacagatcctcgaa
actcacctggggtgggcggcagcgcgcctcggctatcgcgtcgccacgccggtcttcgat
ggggcaagcgagacggagatcaaggagtggctcaaacgcgccgatctgccgcccgacggc
aagattaccctctacgatgggcgcaccggtgaaccgttcgaccatccggtgaccgtcggc
tatatctatatgatgaaactggcgcacctggtggaggataagatccacgcgcgctccacc
ggaccgtacagcctggtgacgcagcaaccgctcggcggcaaggcgcagttcggcggtcag
cgcttcggcgagatggaagtctgggcgctcgaggcgtatggcgccgcctatacgttgcag
gaaatgctgaccgtgaagtcggacgatgtggtgggtcgcgtgaagacctatgaggcaatt
gtgaagggggagccgatccaggaagccggcgtgccggaaagctttaaggtgctgatcaaa
gaattgcagtccctcggtctgtcggtcgaggtcctgagcgccgatgaaacgccggtggaa
ctgaccgacgatgtggacagcgacctggcagcgctcgatggcatcaatctgtcgggaatg
gagcgcggtgaattctaa
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integrated database retrieval system
