Rosa chinensis (China rose): 112165407
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Entry
112165407 CDS
T06020
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112165407
09124 Replication and repair
03420 Nucleotide excision repair
112165407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112165407
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112165407
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112165407
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112165407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
112165407
NCBI-ProteinID:
XP_024157660
LinkDB
All DBs
Position
5:complement(5201273..5206479)
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AA seq
453 aa
AA seq
DB search
MPQVRIIAKNFMDMVAALPAMKLDKLYDNSFICEAILRSLPPLAKKYVLQMLCVELPVNS
KSMEEWVLPDGASKHRVAIDRLVQLRIFTETKKKGDVTYTLNPIFQTNLKKLLVYGVVLP
REPMPSSVTVRRPSSEELEAFALEQWECFLLQLINSSQTERPSNISSSMMKTFQRGLVTQ
RDREAPRLTESGFQFLLMDTNAQLWYIIREYITSSEERGIDSADLISFLLELSFHVTGEA
YNINTLTEVQKNTIKDFTDLGLVKLQQGRKESWFIPTRLATNLSVSLTDTSSRKQGFVVV
ETNFRLYAYSSSKLHCEILRLFARIEYQLPNLIVGAITKESLYGAFDNCITAEQIISFLQ
QNAHPRVAERIPSVPENVTDQIRLWETDLNRVEMTTAYYYDEFPSRDLFDGAVDYARSYN
GLLWEAPDDSKKMRLVVRAENHGHMREYLSGQK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaggatcatagcgaagaacttcatggacatggtggctgccttgcccgcc
atgaagctcgataagctctacgacaactcattcatctgcgaagccattctcaggtctctg
ccaccactggccaagaaatatgttttgcaaatgctatgcgtcgagcttccggtcaattcc
aagtcaatggaggagtgggtgctccctgatggggcctccaagcatcgagtggcgattgat
cgattggttcaattgagaatattcaccgagaccaagaagaagggggatgttacatacaca
ttgaatcctatatttcagactaatctcaagaagcttctggtatacggtgtagttttgcca
agagaaccaatgccttcgagtgtcacagtgaggcgtccaagctctgaggaacttgaggct
tttgctctagaacaatgggagtgtttcttgctgcaacttatcaactcatctcaaactgaa
aggccgtcaaacatcagttcgtctatgatgaaaactttccagcggggtcttgtgactcaa
agagatagagaagctcctaggttaactgaaagtggtttccagttcttgctgatggataca
aatgcacaactttggtacatcatcagagaatatatcactagctcggaggagcgcgggatc
gattcggcagatttgatttcattcctgctagagctaagttttcatgttacaggcgaggca
tataacataaatacattgactgaggttcagaaaaatacgatcaaggacttcacagatttg
ggattggtcaaacttcagcagggtaggaaagagagttggtttatacctactagattagct
actaatctttcggtgagcttgacagacacatcatcaaggaaacagggatttgtggttgtg
gaaacaaactttaggctctatgcatactcatcatcaaaattgcattgtgaaattttgcgt
cttttcgcaaggatagaatatcaacttccgaaccttatagttggagcaataacaaaagaa
agtctgtatggtgcttttgacaattgcatcactgcagaacagataatttcttttcttcag
caaaatgcacatccacgtgttgcggagagaataccatctgtacctgagaatgtcacagat
cagatcaggctctgggaaactgatttaaacagagttgagatgactactgcatattattac
gatgaatttccatccagggatctctttgacggtgctgttgactatgcgagaagctataat
ggtttgctgtgggaggctccagatgattcaaaaaagatgcgtttggtggtcagggccgaa
aaccacgggcacatgcgagaatatctttccggtcaaaagtag
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integrated database retrieval system
