Rosa chinensis (China rose): 112175793
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Entry
112175793 CDS
T06020
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112175793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112175793
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112175793
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112175793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
112175793
NCBI-ProteinID:
XP_024169311
LinkDB
All DBs
Position
1:41677390..41696045
Genome browser
AA seq
2406 aa
AA seq
DB search
MLKFSQATANQIRFLLQSLNDANSDTVHRELTQFIEYGVEGSVLLLQTCLDHLNHYRTDT
KNVALERVLASIFKYLIDQPNFSTMFCESLRNTEVNEGIVENFSSVLQLSVPEKIGIGLA
LSDSENLDTRICGKNFCMAQIEKLCETPVDRISSEKIQNIVMFLQRSEGLSKHVDSFMQI
LSLLQLKDDENSFVLSPLLSDELRDANFLRNMDLFRESGENDFDAILAEMEKEMNMGDIM
KELGYGCTVDSSQCKEILSLFLPLNEITISKILGTIACTHAGLEDNQNTFSTFRLALGYS
TSSDLPMLNTWNIDVLVDMINQLAPDTNWISVIENLDHEGFYIPNQEAFSFFMSVYQHVC
QEPFPLHAICGSVWKNTEGQLSFLKHAVSSPPEVFNFAHSVRQLPYMDTVNGHKLQLGHA
NHAWLCLDLLDVLCHLAERGHALSVRSILEYPLQHCPEVLLLGMAHINTPYNLLQYEVSF
IVFPMIVKNVMGNGMIVDLWHTNPSLVLRGFVDAYNSDPDSMTRILDICQELKILSSVME
MIPSPFSIRLAALAFRKELVELEKWLSSNLNTYKDTFFEECLKFLKEIQAGGTQDFSTRP
FQHAGAVSTLYGDTTATFSKVLKAHVAQITSSHLTEEMEKLSLSIMDSNPRLQNGGPTES
STDGYADDIEAEANSYFHQMFSGQLTIESMVQMLARFKESSVQREQSIFECMIANLFEEY
RFFPKYPERQLKIAAILFGSVIKQQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVERLIEWPQYCNHILQISHLRNTHSELVVFIEQALARISSGHSDSDGSNHASAVHHHG
PSQVTSGNVELNGSSILQTGQTLSAPLQLHQRHESSFDDRHKSSTPSNEVKPLVSSVTQP
AVVPVSDAPSIQKLQNAVSAPSMLSSASPGFVRPSRGATSTRFGSALSIETLVAAAEKRD
APVEAPAEIQDKVLFIVNNISLANIEVKSKEFSEILKEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKLNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQNSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDLKEITPTSLLKDRNRELEGNPDFSNKDVGASQPQI
AEVKSGIISPLNQVELPLDVAPSNSGSHTHLLSQYATLMEDDKLALGLSDQITSAQGLLQ
ATPSQSPFSVSQHPTAIPNIGTHVIINQKLSALGGLHVHFQRVVPIAMDRAIKEIVSGIV
QRSVSIATQTTKELVLKDYAMESDDTRIFTAAHLMVASLAGSLAHVTCKEPLRSSILSQL
RNSLQGLNIASDLLEQAVQLVTNDNLDLGCAVIEQAATDKAVATIDGEIGPQLSVRRKRE
GVGATYFDANMYPQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSIQSSHVLPV
ATTASSGSTGLTSTYGSASGQLNTGYSPGPGSKFEAVSRPLDEAMESNSALHLSIMCNSA
PSIHVGMADGVSQHSSENDSVVASFPSAASAPELHSVESSDAVKESGVSSQPPPSPAVTE
RLGSLSEPSLTTGAALEKYQIVAQKLEALVTNDARESEIQGVIGEVPDIILRCVSRDEAA
LAVAQKVFKGLYENATNQIHVGAHLAMLTAIRDVCKLVFTQLTSWVIYSDEERKFNKEIT
VGLIRSELLNLAEYNVHMAKLIDGGRNKPATEFATSLLQTLVIEESKVISELQSLVDAMG
KAAAKPGSPESLQQVVEIVKNPAANGAAPSGVNVGKDDKARQSREKKASVHSPVSREEFS
IVESAEPDPPGFREQVSMLFAEWYRICELPGANENSCAHLIIQLHSSGMLNGDDLTDRFF
RLLTELTVAHCLSSEVINSGTLQTPQQVQNLSFLAIDIYAKLVFLILKMEPGSSKLMLLS
KILAVTVRFIQKDAEEKKSSFNARPYFRLFVNWLLDLGSLDPVIDGANFQILTAFANAFH
ALQPLKVPTFSFAWLELVSHRSFMPKMLAGNGQKGWPYIQRLLVDLFQFMEPFLRNAELG
VPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDP
STPNLKIDLLAEITQSPRVLSEVDAALKLKQMKTDVDEYLKTRQQGSSFLTELKQKLLLL
PTEAASAGTRYNVPLINSLVLYVGMQAIQQLQARTPHAQANQTVPFVYLVGAALDIFQTL
IVDLDTEGRYLFLNAIANQLRYPNTHTHYFSFIVLYLFAESNQQEIIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPRYNFWNRAFIRCAPEIEKLFESVSRSCGAKPVDESMVSGW
VPETAH
NT seq
7221 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagttttcgcaggccactgcgaaccagattcggttcctcctgcaaagcctcaat
gacgccaactcggacactgttcaccgagagcttactcagtttattgaatatggagttgag
ggaagcgttttgctgctccaaacctgcctggatcatttgaatcattacagaacagataca
aagaatgtggcactggaacgggttcttgcctcaattttcaaatatctcatcgaccaacca
aatttcagtactatgttttgtgaatcactaagaaatacagaggtcaatgaaggaattgtg
gagaatttctcgagtgtattgcaactgtctgtacctgagaaaattggcattggtcttgct
ttgtcagattcagaaaacctagacaccagaatatgtggcaaaaacttctgtatggctcag
attgagaaattgtgtgaaactcctgttgacaggatctcttctgagaaaattcagaatatt
gttatgttccttcagcggtctgagggtctttccaagcatgtagattcgtttatgcagata
ttatctttactgcagctgaaagatgatgaaaactcttttgttttaagtccattgctttca
gatgagcttcgtgatgccaattttttgaggaacatggacttgttccgtgaaagtggagaa
aatgattttgacgctattttagcagaaatggagaaggagatgaatatgggagatattatg
aaggaattaggttatggatgcacagttgattcatctcagtgcaaagagattttatccctt
ttcttacccctcaatgagattactatctccaaaatacttggcacgattgcctgcacccat
gctggtcttgaggataatcagaatacattttctaccttccggttggcgcttggttatagt
acttcatctgatttgcctatgctaaacacctggaacattgatgtccttgtggatatgatc
aatcaacttgctccagacaccaattggataagtgttattgaaaatttggatcatgagggg
ttctacattcctaatcaggaggcattctcttttttcatgtctgtatatcagcatgtgtgt
caggagccattccccctacatgccatctgtgggtctgtttggaagaatactgagggtcag
ctatcttttctcaaacatgctgtttcatcaccacctgaagtatttaattttgctcactct
gttaggcagctgccctatatggatacggtgaatggccacaagctacaacttggacatgca
aatcatgcatggttgtgtctagaccttttggatgtactttgtcacctagcagagaggggt
catgctctttctgttcgatcgatacttgagtatcctcttcaacactgtcctgaagtcctg
cttcttgggatggcacacattaatactccatacaacctgctgcaatatgaagtgtctttc
attgttttccccatgatagtaaaaaatgtcatgggtaatggcatgattgttgacctctgg
catactaacccctctttggtgctgcggggatttgtggatgcctacaatagcgatccagac
agcatgactagaatattggatatctgtcaagagcttaagattttgtcgtccgtcatggag
atgattccttctccctttagtatcagactggcggcccttgctttcagaaaagagcttgta
gaactcgagaagtggttgagtagtaatttgaatacatataaagatactttctttgaggag
tgcctcaagttcctgaaggagattcaagctggagggacccaagatttctcaaccagacct
ttccaacatgctggtgctgtctcaactctctatggggacactactgctacattctcgaag
gttcttaaagctcatgtcgcccagattacttctagccaccttactgaggagatggaaaaa
ctctctctatcaattatggattctaatccaaggctgcagaatggtgggcctacagagtca
tcaacagatggatatgcagatgacattgaagctgaagccaactcttacttccatcaaatg
ttttctggtcagttgactattgaatcaatggtccaaatgcttgcccgtttcaaagaatct
tctgttcaaagggaacaatccatttttgagtgcatgattgctaatctgtttgaagagtac
agattctttccgaaatatcctgaaagacagctcaaaattgctgcaattttatttgggtct
gtcatcaagcagcagcttgtaactcatctgactctagggattgctctgcgtggtgtttta
gatgcattgcgcaaacctgcggattcaaaaatgtttgtgtttggaacaaaggctctggag
cagtttgtggagcgtctgattgaatggccacagtactgcaatcacattcttcagatatcc
catttgcgcaatactcattcagagctggtggtattcattgaacaggctcttgccaggatt
tcatctggtcattcagattcagatggaagtaaccatgcttctgccgttcatcatcacggt
cccagtcaagttacctcaggaaatgtggagttaaatggatcaagcatcttacaaactggg
cagacactatctgctccgctccagctccatcagagacatgaaagctcttttgatgaccgt
cacaagtcctcaactccatctaatgaggtaaagccacttgtatcttctgtgacgcaaccg
gcagttgttcctgttagtgacgctccgagtattcagaagttacaaaatgcagttagtgct
ccatcaatgttgtcttctgcttcccctggttttgttcgtccgtcacgaggagctacctct
actaggtttggctctgctttgagcattgaaacattggttgcagcagctgagaaaagggat
gctcccgttgaggctccagcagagattcaggacaaagtattatttatagttaataatata
tcacttgctaatattgaggttaagtcgaaggagttttctgagatactgaaagagcaatac
tatccctggtttgcgcagtatatggttatgaaaagggcaagcattgagcccaattttcat
gacttgtacctgaaatttctggacaaacttaattcgaaggctttgaataaagagattgtt
caagccacgtatgagaactgcaaggttcttctagggtctgagcttataaaatcaagctca
gaggagcgttcattgctaaaaaatttaggtagctggcttgggaagcttactattggaagg
aatcaagtcttaagggctcgtgaaattgatcccaaatctttgatcatagaggcatatgag
aaagggttgatgattgctgtcataccttttacttcaaagattttggaaccatgtcagaat
agcctcgcatatcaaccaccgaatccctggacaatgggtattcttggattacttgctgag
atctattccatgccaaacttgaagatgaacctcaagtttgatatagaggttctattcaag
aatctaggagtggatttgaaggagataacaccaacttctcttctcaaggatcgcaacaga
gaacttgaagggaatccagatttctccaacaaagatgttggagcatctcaaccacagatt
gctgaagttaaatctggaattatttctccactaaaccaagttgagctaccacttgacgtt
gctccatctaattctgggagccacacacatctgttatctcagtatgctaccttgatggag
gatgacaagcttgctttggggttatctgatcagatcacttctgctcaaggactgttacaa
gctactccatcacagtccccattttctgttagtcagcatcccacagcaatacctaacatt
ggaacccacgtaattatcaaccagaagctcagtgccttgggggggctgcacgtgcatttc
caaagagtggttccaattgctatggatagagctatcaaagaaattgtctctggtattgtt
cagcgcagtgtttctatagctacccagacaactaaggagcttgttttaaaggactatgcc
atggaatcagatgacacaagaatttttactgcagcgcacttgatggtcgccagtttggca
ggaagtctagctcatgtcacatgcaaggaacccttgcgcagttcaatattaagtcagcta
agaaattctcttcagggattaaacattgcaagtgatcttctagaacaagctgttcaactt
gtaaccaatgataatctggatcttggctgtgcagtcattgagcaggctgctacagataag
gcggtagcaacaattgacggggaaataggtccgcagctttcagtaagaagaaagagagaa
ggtgttggtgcaacctattttgatgcaaacatgtatccacaaggttctatgggtgttgtg
ccagaagctctccgccctaaacctggtcatttgtccctttctcagcaacgagtttatgag
gattttgttcggcttccctggcaaaaccaatctattcaaagttcgcacgttctgccagtt
gctaccacagcttcatctggtagtactggtctcactagcacatatggttcagcatccgga
caacttaacacgggctactcaccaggacctggaagcaaatttgaagctgtttctcgtcca
ttagatgaagcgatggaatccaattctgccctccatcttagtattatgtgtaacagtgct
ccatctattcatgttgggatggctgatggtgtttcccagcatagttctgaaaatgattct
gttgttgcctcatttccttctgctgcttctgcccctgagctgcactctgtagagtcatct
gatgctgtaaaggaatctggagtgtcctcacagccaccaccttcacctgctgtaactgaa
cgtcttggaagtctctcagaaccttccctcaccacaggggctgcattggaaaaataccag
attgttgcacagaagttggaagctctggtgactaacgatgctagagaatcagaaatccag
ggagtcattggtgaagtacctgatattatactcaggtgtgttagtcgagatgaggctgcc
ttggctgtggctcaaaaggttttcaagggtttgtacgagaatgcaacaaaccagattcat
gttggcgcacatctagcaatgctgactgcgattcgtgatgtttgcaagcttgtctttacg
cagctcactagttgggtgatttattctgatgaggagcggaagtttaataaagaaattact
gttggccttatacgcagtgaactgctaaaccttgcagagtacaatgttcacatggcaaaa
cttattgatggtggcaggaataagccagcaacagagttcgccacttccttgctccaaact
ttggttattgaagaatctaaagttatctcagaacttcagagtcttgttgatgcaatggga
aaggctgctgcgaagcctggatctcccgagtcactgcagcaggtggttgaaattgtcaag
aatcctgctgctaatggagctgctccatctggtgttaatgttgggaaggatgacaaggcc
agacaatcgagagagaaaaaggcttctgttcactccccagtaagcagggaagagttcagt
attgtggagtctgcggaaccagatcctcctggttttcgcgagcaggtgtctatgctgttt
gctgagtggtaccggatttgtgaacttcctggtgcaaacgaaaatagttgtgcccattta
atcatacagttgcactcaagtggcatgctgaatggggatgatcttacggaccgatttttc
cggctactcacagagcttactgttgcacattgtctatcttctgaggtgattaattcaggc
acactgcaaactcctcaacaagtgcagaatctatccttccttgccattgatatttatgct
aaacttgtatttttaattctcaagatggagccgggatcaagtaaactaatgctcttgtcc
aagattttggcagttacagtgagatttattcaaaaggatgcagaggagaagaaatcatct
ttcaatgcaagaccgtattttagattgtttgttaactggctgctagaccttgggtctttg
gatcctgttattgatggtgctaactttcagatattgacagccttcgcaaatgcatttcat
gcgttgcaacccctcaaagttcctacattcagctttgcatggctcgagttggtgagtcat
aggagtttcatgcctaaaatgctagctggaaatggtcagaagggttggccctatatccaa
cgtttgctggttgacttatttcaattcatggagccttttttgaggaatgctgaactagga
gttccggttcacttcctgtataaaggcacccttagagtgttacttgtgctgctccatgat
ttccctgagttcctttgtgattatcacttcactttctgtgatgttattcccccgagttgc
attcaaatgcgaaatatcatcctcagtgcatttccccgtaacatgaggcttcctgaccca
tctactccaaacttaaagattgatttgcttgctgaaatcactcaatctccacgtgttctt
tctgaggttgatgcagctctgaaattaaagcagatgaagaccgatgtggatgagtatctc
aagacaaggcaacaaggttcttcatttttgaccgaattgaagcaaaaattgctcctttta
ccaaccgaagctgcctcagctggtactcgttacaatgtacccctcatcaactcccttgta
ctctatgtggggatgcaggctatccagcagcttcaggctagaacacctcacgcacaggca
aatcaaactgttccatttgtatatttggtgggtgctgctttggatatcttccagactctg
atagtggacctagatactgaaggacgctaccttttcctaaatgcaattgcaaaccaactg
cgctatccgaacacccatacacattacttctccttcattgttctttacttgttcgcggag
tcaaaccagcaggaaattatccaggagcaaatcacaagggtattgttggaacgtctcatt
gttaatcgccctcacccatggggtctactgataacattcattgagctaatcaagaatccg
aggtacaacttctggaaccgggctttcataaggtgtgcaccagagattgaaaaactcttt
gaatctgtatccaggtcttgtggcgcaaagcctgtggatgagagtatggtttcaggttgg
gtacctgagactgctcactga
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integrated database retrieval system
