Rhodococcus coprophilus: NCTC10994_04061
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Entry
NCTC10994_04061 CDS
T06666
Symbol
ligA
Name
(GenBank) NAD(+)-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rcr
Rhodococcus coprophilus
Pathway
rcr03030
DNA replication
rcr03410
Base excision repair
rcr03420
Nucleotide excision repair
rcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10994_04061 (ligA)
03410 Base excision repair
NCTC10994_04061 (ligA)
03420 Nucleotide excision repair
NCTC10994_04061 (ligA)
03430 Mismatch repair
NCTC10994_04061 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcr03032
]
NCTC10994_04061 (ligA)
03400 DNA repair and recombination proteins [BR:
rcr03400
]
NCTC10994_04061 (ligA)
Enzymes [BR:
rcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10994_04061 (ligA)
DNA replication proteins [BR:
rcr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10994_04061 (ligA)
DNA repair and recombination proteins [BR:
rcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10994_04061 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10994_04061 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10994_04061 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10994_04061 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
UPF0758_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SQI38819
UniProt:
A0A2X4UJH9
LinkDB
All DBs
Position
1:4377497..4379584
Genome browser
AA seq
695 aa
AA seq
DB search
MSEPTDAPATATPEARERWQDLAEQVREHQFRYYVRDAPIISDGEFDALLGELQALEEQY
TELRTPDSPTQLVGGGFATDFTAVGHLEPMLSLDNVFDEGELRAWLARAETETGTHPDYL
CEVKIDGVALSLVYENGRLVRAATRGDGRTGEDVTLNARTIDEVPEKLTATDEYPVPTLL
EVRGEVFFRLEDFQNLNAGLVAAGKAPFANPRNSAAGSLRQKNPAVTAQRRLRMYCHGYG
RIEGFAPQSQSQAYDAFAAWGLPVSPHTVRVNGADAVVERMRYWGEHRHDIEHELDGLVV
KIDDMGLHRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVVRKGVLIGDTVVIRKAGDVIPEVLGPVVDMRDGNEREFVMPNVCP
ECGTPLAPAKEADVDLRCPNSRNCPAQLRERVFHVAGRGAFDIEALGYEAATALLEGNII
SDEGDLFSLTEDDLRKAPFFLTSKGALSKNSERLLQNLANAKEQPLWRVLVALSIRHVGP
TAARALATEFGSLDRIRTASVDELAAVEGVGPTIAAAVGEWFTVDWHSAIVDKWAAAGVR
MEDERDESIARTLEGLSIVVTGTLASFSRDQAKEAILARGGKAAGSVSKKTAFVVVGDNP
GTKADKATDLGVPVIDEDGFRILLDQGPEAVREVG
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaccgaccgacgcgcccgccactgctactcccgaggcgcgtgagcgctggcag
gatctcgccgaacaggtgcgcgagcaccagttccgctactacgtgcgcgacgctccgatc
atctccgacggagagttcgatgcgctgctcggcgagctgcaggcactcgaggagcagtac
acggagttgcgcacgcccgactcgccgacccagctggtcgggggcgggttcgcaaccgac
ttcactgccgtcggtcacctcgagccgatgctcagcctcgacaacgtcttcgacgagggc
gagctgcgagcctggctcgcgcgcgcggagaccgagacgggcacccatccggactatctg
tgcgaggtcaagatcgacggtgtcgcactgagtctcgtgtacgagaacggccgcctcgtc
cgggccgcgacgcgcggggacggccgcaccggcgaagacgtcacgctcaacgcccgtacg
atcgacgaagtgcccgaaaagcttacggcgacagacgaatacccggtcccgacgcttctc
gaggtgcgcggtgaggtattcttccggctcgaggacttccaaaacctcaacgccggtctc
gtcgccgcgggaaaggcgccgttcgccaatccgcggaactccgccgcggggtcgctgcgc
cagaagaatcccgcggtcaccgcgcagcgacggctgcgcatgtactgccacggctacggc
aggatcgagggtttcgcgccgcagtcccagtcgcaggcatacgacgcattcgccgcgtgg
ggcctgccggtctcgccgcacaccgtccgcgtgaacggagcggacgccgtcgtcgaacgc
atgcggtactggggcgaacacagacacgacatcgagcacgaactcgacggcctggtcgtg
aagatcgacgacatgggcctgcaccggcggctcggagcaacctcccgcgccccacgctgg
gcgatcgcgtacaagtatccgccggaggaagtgacgaccaaactcctcgacatccgcgtc
agcgtcggacgtaccggccgggtcacgccgttcgcctacatggaaccggtcaccgtggcc
ggttccacggtctcgctcgcgacgctgcacaacgcgtcggaggtggtgcgcaaaggtgtc
ctgatcggtgacaccgtggtgatccgcaaagccggcgacgtcatccccgaagttctgggt
ccggtggtcgatatgcgcgacggcaacgaacgcgaattcgtcatgccgaacgtgtgtccc
gagtgcggcacgccgctcgcccccgcgaaggaagccgacgtcgacctgcgctgccccaat
tcacggaactgccctgcccagctgcgtgagcgggtcttccacgtcgccggtcgcggcgcg
ttcgacatcgaggcgctcgggtacgaggcagccaccgcgctgctcgaaggaaacatcatc
tccgacgagggcgacctgttctcgctgaccgaggacgacctgcgcaaggctcccttcttc
ctcacctcgaagggtgcgctgtcgaagaacagcgaacgcttgctgcagaacctggcaaat
gcgaaagaacaacccctgtggcgggtcctcgtcgcactgtcgatccgccacgtcggcccg
accgcggcacgcgcactggccacggaattcggcagcctggaccggatcaggacggcgtcc
gtcgacgaactcgccgcagtcgagggtgtcgggccgacgatcgcggccgctgtcggcgag
tggttcacggtcgactggcactccgcaatcgtcgacaaatgggcggcggccggggtgcgg
atggaggacgagcgcgacgagtcgatcgcgcgcactctcgagggactctcgatcgtcgtc
acgggcaccctcgcgagtttctcgcgcgaccaggcgaaggaagccattctggcgcgaggc
ggcaaggctgcgggctcggtgtcgaagaagaccgcattcgtggtggtcggggacaatccg
ggtaccaaagccgacaaggcgaccgatctcggtgttcccgtgatcgacgaagacgggttc
agaattctgctcgatcagggccccgaggccgtgcgcgaggtgggctga
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