Raphidiopsis curvata: NIES932_13110
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Entry
NIES932_13110 CDS
T09812
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rcs
Raphidiopsis curvata
Pathway
rcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES932_13110 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcs03021
]
NIES932_13110 (rpoB)
03400 DNA repair and recombination proteins [BR:
rcs03400
]
NIES932_13110 (rpoB)
Enzymes [BR:
rcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES932_13110 (rpoB)
Transcription machinery [BR:
rcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES932_13110 (rpoB)
DNA repair and recombination proteins [BR:
rcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES932_13110 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAZ89828
LinkDB
All DBs
Position
complement(1374980..1378321)
Genome browser
AA seq
1113 aa
AA seq
DB search
MNNENYMEPSFLLPDLIEIQRSSFRWFLEEGLIEELNSFSPITDYTGKLELHFLGHNYKL
KEPKYSVEESKRRDSTYGVQMYVPTRLLNKETGDIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKSEIDKNGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKTRKLS
IQVLLKALGLSDNEILDALRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTVMGGQ
QLLESRFFDPKRYDLGRVGRYKLNKKLRLSVPDTTRVLTPGDILSAVDYLINLEYDIGSI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNQYGFLETPFRPVENGRVCYEKPAVYMTADEEDDLRVAPGD
IPVDDNGQILGIQVPVRYRQEFSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRAL
MGSNMQRQAVPLLKPERPLVGTGLEAQGARDSGMVIVSRTDGDVVYVDATEIRVRVKEKA
ALTNRESESIPHKPQEIKYVLSKYQRSNQDTCLNQKPLVRIGEKVIAGQVLADGSSTEGG
ELALGQNVIVAYMPWEGYNYEDAILISERLVQEDVYTSIHIEKFEIEARQTKLGPEEITR
EIPNVGEDALRQLDEQGIIRVGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARD
VRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGN
KGIISRILPLEDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFECLLGWAGHNLGVRFKITP
FDEMYGEESSRRIVHGKLWEAREETSKDWVYNPENPGKIMVYDGRTGEPFDRAVTVGIAY
MLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELL
TVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLGLDIAVHKVETQTDGTSL
DVEVDLMADQVSRRTPPRPTYESFSRDSLDEDE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgagaattatatggaaccatcctttctattaccagatctaattgaaattcag
cgttctagctttcgctggtttttagaagagggtttaatagaagagctgaactcatttagt
cctattacggactatacagggaaattagaactccattttttaggacataactataagcta
aaagaaccgaaatatagcgtagaagagtcaaaaagaagagatagcacatacggtgtacaa
atgtatgtgcccacaagacttcttaataaagaaacaggtgatattaaagaacaggaagta
tttataggtgatctaccgttaatgacggatagaggaacctttattattaacggagccgag
cgggtaatagtcaaccaaatcgtgcgatcgcccggagtatattacaaatcagagattgat
aaaaacgggagaagaacatattctgccagtctaattcccaaccggggggcatggctaaaa
tttgagacagaccgtaatgatttagtgtgggtaagaatagataagacccgcaaattgtca
attcaggtactacttaaagcattaggactatcagacaacgagattttggatgctttaagg
catccagaatactttcaaaagaccattgaaaaagagggacaattctccgaagaagaggcc
cttctggagctatatagaaagctgagacctggggaaccacccacggtgatggggggacaa
cagctattagaatcacgctttttcgatcccaaacgttacgacctaggtagggtaggtaga
tataaactcaacaagaaactgcgcctttcagttcctgacaccactagggttctcacccca
ggagatattctatctgctgtggactatctcatcaacctagaatacgacattggtagcatt
gatgacattgaccatttaggaaatcgccgagttagaagcgttggtgagctgcttcagaac
caagtaagagttggtttaaaccgtttagagaggatcattagagaaagaatgaccgtctcc
gatgcggaagttttaacaccagcatcactagtgaaccccaaacccctagtagcagccata
aaagagttttttggttccagccagctaagtcaattcatggatcaaaccaaccccttagcg
gaactaacccataaacgacgcttgagtgctttaggtcctggtggactaaccagagagaga
gctggttttgccgtgcgagatattcatcccagccactacggacgcatttgtcctattgaa
acgccagaaggtccaaatgcggggttaattggttccctagccacccatgctcgtgttaac
cagtatggatttttagaaacacctttcagacccgtagaaaacggaagagtctgctacgaa
aaacctgctgtttacatgacagcagatgaggaagatgacctgcgagttgcacctggtgac
attcccgtagatgacaacggacaaatactaggaattcaagtacccgttcgttatcgccag
gaattttccaccactactcccgaacaggtagactacgtagctgtgtcaccagtacaaatc
gtctcagtggctaccagcatgattccctttttggagcacgatgatgccaaccgagcctta
atgggttctaacatgcaaaggcaagcagtacccttattgaaacccgagcgtcccctagtg
ggaactggactggaagcccaaggcgccagagactcaggtatggtaattgtttcccgtact
gacggagatgtggtgtatgtagatgcgaccgagattcgtgttcgggtcaaagaaaaagcc
gctcttaccaaccgtgaaagcgaaagtattccccataaaccccaggaaataaaatacgtt
ctctccaaatatcaacgttctaaccaggacacctgtctcaatcaaaaacccctagtgcgg
attggggaaaaagtcatagcaggtcaggtattagcagatggttcatctacagaaggggga
gaattagcattagggcaaaatgttattgttgcctacatgccctgggaagggtataactac
gaagacgcaattttaatttccgaaagactggtacaagaagacgtttacacatcaatacac
attgagaaatttgaaatagaagcaagacaaaccaaactaggtcctgaagagattaccaga
gaaatacccaacgttggggaagacgccctcagacaattagacgaacaggggataatcaga
gtaggggcctgggtagaatcaggagacattctagtggggaaagtaactcctaaaggagaa
tcagatcaaccaccggaggaaaaactactcagagcgattttcggagagaaagctcgcgac
gtgagggacaactccctgcgggttcccaatggggaaaaaggaagagtagtagatgtgcga
ctatttaccagagagcagggggatgaacttccaccgggagccaatatggtagtgcgagtg
tatgtagcccagaaacgtaaaatccaggttggtgacaaaatggctgggagacatgggaat
aaaggcatcatttcccgaattttgcccttagaagacatgccataccttcccgatggcacc
ccagtagatatagtcctcaaccccctaggtgtacctagtcgaatgaacgtaggacaggtg
tttgaatgcttattgggttgggcgggtcacaacctgggagtacgctttaaaatcaccccc
tttgatgaaatgtacggagaagaatcttcccgacgtatagttcacggcaaattatgggaa
gctagggaagaaaccagtaaggattgggtatataatcccgaaaaccccggcaaaatcatg
gtttatgatggacgcaccggcgaaccctttgatcgtgcagtcacagtggggatagcctat
atgctcaaacttgtccatttagttgatgataagattcatgctcgctccacgggtccttat
tccttagtcacccagcaacccttgggtggtaaagcacaacaaggaggtcaaagatttgga
gaaatggaagtgtgggcactagaggcatttggcgctgcttataccttacaggaactgtta
actgtgaaatcagatgatatgcagggacgtaatgaagcattgaatgccattgttaaaggg
aaagctattcctcgtcctggcactcctgagtccttcaaagtgttaatgagagaattacaa
tctttaggattggatattgcggtacataaggtagaaacccaaactgatggtacttccctg
gatgtagaagtggacttgatggccgatcaagtatctcgtcgcactcctccccgtccaaca
tacgagtccttttcccgtgattccctggatgaggatgagtaa
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