Ricinus communis (castor bean): 8265839
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Entry
8265839 CDS
T01087
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8265839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8265839
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8265839
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8265839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
8265839
NCBI-ProteinID:
XP_048226366
LinkDB
All DBs
Position
1:766619..785159
Genome browser
AA seq
2418 aa
AA seq
DB search
MPTLSSTISNQVRFLLHSLNEDNLDSVFRELCKFTENGLDESIVVLQTCLEHVNFQRTDL
KNMQLQPVILSIFKFLLDRPNFSTVLCQSLRSSEISEEFLDNFSNVLHLSLSEKIAIGLA
LSDSENIETRMGAKKFCIAQIEELCSNPVSMNSAQQIQNIVMFLQQSEGHTKHVDPFLQM
LSLVQPKDVFPFFLTPLLSDEMREANFLRNMDLFHECQENEFDALLAEMEKEMNAGEIVK
ELGYGCTFDSSHCKEILSNFLPLTESTISKILGTIARNHAGLEENQSTFSNFGLALGCSI
STDLPPLGSWDIDILVKTIKQLAPGTNWIKVVENMDYEGFYIPNEEAFSFFMSVYRHASQ
DLFPVHVLCGSVWKNALGQLSLLKYAVLAPPEVFTFAHSGRQLVYNDAVHGQKLQVGHAN
HAWLSLDLLEVLCQLAERGHSSSVRSILEYPLKHCPEILLLGMSHINTAYKLLQYEVSFT
VFPMIIKSTTSSGMILYLWHINPNVVVRGFVDAYNIEPDCTIKILDICQELKILSSVLDM
IPYAIGIRLAVLASRKELIDLEKWLTTNLIAYKDFFFEECLKFLKEVQLSGSQEFSSKPF
HHASSVVNIYMEASSIFLKVLKAQTGLIISSQLSDEMERLHITITDSNPRLQNGGSADSS
TPEPFSDDVEAEANSYFHQMFSGQLTIEAMVQMLARFKESPVRREQLIFECMIGNLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFIFGTKALD
QFVDRLIEWPQYCNHILQISHLRTTHSEIVSFIERQLARISSGHLESDGNNGSASHHHGL
SQASSGNGELISVNIPQSVQQLSSTLNVQQRHESPLDERHKVFLASSNDTKSVLSSGGQS
SVAPLSDNSIAQKSAAGATAMLSSSHGFIRPSRGVTSTKFGSALNIGTLEAAAERRETPI
EAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL
YLKFLDKVSSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNH
VLRGREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIY
SMPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREMEGNPDFSNKDVGVSQPQIVP
EVKPGIISPLNHVDLPLEVANPPNAVGHTHLLPQYAAPVNLSVGTLTEDEKLAALGMSDQ
LPPGQGLFQATPNQSPFSVSQLPTALPNFGTLVIINQKFNSWGLHLHFQRLVPLVMDRAV
KEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPL
RNSISTQLRNSLQGLNSTSDLLEHAVQLATNDNLDLGCAAIEQAATDKAIQTIDAEIAQQ
LSLRRKHRDGVGPTFFDANLYSQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQS
GQGSHTIPMGSSTSAVSTALAGAYGSGSGQLNPGYSSAPGNVGFEAVSRTLDMGSDATES
NSAAILSSSSIHIGATDGAIQPNSENSATSVSFSSAAPASEHSGDTSDTVKELGISSQPI
SSSAASDRLVTSASEPTLNTRDALDKYQIVAQKLEALVSSDGREVEIQGLITEVPEIILR
CVSRDEAALAVAQKVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEE
RKFNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKGATEFSISLIQALVVEESKVISEL
HNLVDALAKLAAKPGSSESLQQLIEIVRNPVANSAVISGFTVGKEDKSRQSRDKKAANQS
MSTSNREEYSIVESVEPDPAGFREQVSLLFAEWFRICDLPGANDAASTHYILQLHQNGLL
KGDDMTDRFFRIITELSVAHCLSSEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILKVE
QGSNRFFLLSKILAVTVRFIQKDSEEKKLSFNPRPYFRLFVNWLLDLVSPDPIIDGTNLQ
ILTAFANAFHNLQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFL
EPFLRSAELGMPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSA
FPRNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRHQGSSFL
SELKQRLLLSPSEAASAGTRYNVPLINSLVLYAGMQAIQQLQARAPHSQSSGNTAPLAVL
LVDAALDIYQTLIVELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQE
QITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGG
LKPMDESMVSGWVSEGTH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgttatcatcaacaatatcaaatcaggtacggttcttgcttcacagcttgaac
gaagacaacctcgactctgtttttcgagaactttgtaagtttactgaaaatggacttgac
gaaagcattgtggtgcttcaaacctgcttggaacatgtgaatttccaacggacagacttg
aaaaacatgcagctgcaaccggttattctttcaattttcaagtttcttttggacagacca
aatttcagtactgtgctttgtcagtcgcttagaagctcagagattagcgaagaattccta
gacaatttctctaatgtgttgcatttatctctgtctgaaaaaatcgccattggtcttgct
ctgtctgattctgagaatatcgaaaccagaatgggggcaaagaaattttgcattgctcaa
attgaggaactgtgttctaatccagtttccatgaactccgcccagcaaatccagaatatt
gttatgttcctccagcagtctgagggtcataccaaacatgtagatccctttttgcagatg
ttatccttggtacaaccaaaagatgttttccccttctttctaactccactgctttcagat
gaaatgcgtgaggccaatttcttgaggaatatggatctgttccatgaatgccaggaaaat
gaatttgatgcacttttagctgaaatggagaaggagatgaacgctggtgaaattgtaaag
gaattgggctatggatgcacatttgattcctcacactgcaaagagatattatccaacttt
ttgccactgactgagagcactatctcaaagatactcgggactattgctcggaaccatgct
ggccttgaggagaaccaaagcacattttcaaactttggcttagctcttggttgcagcatt
tccactgatctcccaccattaggctcttgggatattgacatccttgtaaagacaatcaag
caacttgctcctggtaccaactggataaaagtggtggaaaatatggattacgagggattt
tacatccctaatgaggaagcattctctttcttcatgtctgtatatagacatgcttcccag
gatctgttccctgtccatgttctctgcgggtctgtttggaaaaatgctcttggtcaacta
tctcttctcaaatatgccgtattggcaccaccagaagtgtttacctttgcccattccggg
aggcagctggtctataatgatgcagtacatggacaaaagcttcaggttgggcatgcaaat
catgcatggttgtctcttgacctactggaagtgctttgtcaactagctgagaggggacat
tctagttctgttcgatcaatccttgaatatcctctcaagcactgtccggaaatcttactt
cttgggatgtcacatatcaatactgcatataaacttctccaatatgaagtgtcttttact
gtttttcctatgataatcaaaagcaccacaagtagcggtatgatactttacctctggcac
ataaatcctaatgttgttgtgcggggatttgtagatgcttacaacattgagccagactgc
acgatcaagatattggacatctgccaagagctaaagattctgtcatcagtgttagacatg
attccatatgctattggtatcagattggcagtcctagcttcacgaaaagaacttatagac
cttgagaagtggctgactactaatttaattgcatacaaggattttttctttgaggaatgt
ctcaagttcttgaaggaggtccaacttagcggatcgcaggaattttctagcaaacctttc
catcatgctagttctgttgtgaatatttatatggaggctagctctatcttcctgaaggta
cttaaagctcagacaggcttaatcatctctagtcaactttctgacgaaatggaaaggttg
catataacaattacggattctaatccgaggctgcagaatggtggctctgcagattcttct
acccctgaaccgttctctgatgatgttgaggcagaagcaaactcttacttccatcaaatg
ttttctggtcagttgacaattgaggctatggttcaaatgcttgcccgatttaaagaatct
cccgtgagaagggagcagttaatttttgagtgcatgattggcaatctgtttgaggagtac
aggtttttccccaaatatcctgaaagacaattaaaaattgctgccgttctatttggttct
gttatcaagcaccagcttgtaactcatctaactcttgggatcgccttgcgcggtgtttta
gatgcactacgcaaacctccagattccaaaatgtttatctttgggaccaaggccttggat
cagtttgtagatcgcctgattgagtggccacagtactgcaatcatattttacagatatct
catctgcgtaccactcattcagaaattgtttcttttatcgaacggcaacttgccaggatt
tcatcaggtcatttggaatctgatggaaataatggttctgcttctcatcatcatggttta
tctcaggctagctcggggaatggggagttgattagcgtcaatattccacagtctgtgcag
caactttcttctacgctgaatgttcaacagagacatgaaagtcctcttgatgagcgccat
aaagtctttctggcttcatctaatgacaccaaatctgttttatcttctggagggcaatct
tcagttgctccgttgagtgataattcaatcgctcagaagagtgcagccggtgctacagct
atgctgtcttcttctcatggtttcatccgtccttcccgaggagttacatctaccaagttt
ggctctgctttgaacattggaacacttgaagctgctgctgagagaagggaaacaccaata
gaggctccagcatctgagattcaggacaaaatttcattcataattaataatatttcagct
gcaaatattgaagctaaagcaaaagaattcactgaaatattgaaagagcaatattatccc
tggtttgcccagtatatggttatgaaaagggcaagcattgagcctaattttcatgatttg
tacttgaagttccttgataaagttagctcaaaggccttgaataaggagatcgtccaggca
acttatgagaactgcaaggttctcttaggttcggagctaataaaatcgagttcagaagag
cgttcattgctaaaaaatttgggaagctggcttgggaaattaactattggtaggaatcat
gtcttgaggggtcgtgagatagatccaaaatctctgatcatagaggcatatgagaagggc
ttgatgattgctgttattccatttacttccaagattctggagccatgccagagcagtcta
gcctatcaacctcctaatccttggactatgggaattcttggattgcttgcagagatctac
tcaatgccgaacttgaaaatgaatctcaagtttgacatagaggttctattcaaaaacctt
ggtgtagatatgaaggacatagcgcccacttctcttttgaaagatcgaaagagagagatg
gaagggaaccctgatttctctaataaagatgttggagtatctcagccacagattgttcct
gaagttaaacctggaataatatctccgcttaatcacgttgatttgccactagaggttgcc
aacccacctaacgctgttggccatacacatttgttacctcagtatgctgctcctgttaat
ctttctgttgggacattgacggaggatgaaaaactagctgcactaggcatgtctgatcag
cttcctcctggtcaaggactattccaagctactcccaatcagtcacctttctctgtcagc
cagcttcccacagcattacctaactttggaactcttgttattatcaaccaaaaattcaat
tcttggggcttgcacttgcattttcaaagactggttcctcttgtaatggatagagctgtc
aaagagatagtttctagcatcgttcagcgtagtgtctctatagctacccagacgactaag
gagcttgttttgaaggattacgcgatggaatctgatgagacacggatatataacgcagca
cacttgatggttgcaagtttggctggaagcttagctcatgtaacatgcaaggaaccctta
cgtaattcaatatcaactcaactaaggaattcgcttcagggtttgaatagtacaagtgac
cttctggagcatgctgtgcaacttgctacaaatgataaccttgatcttggttgtgcagca
attgagcaggctgctacagataaggcaatacaaaccattgatgcggaaatagcccaacaa
ctttctttgagaaggaagcatcgagacggtgttggtccaacattttttgatgcaaacttg
tattcacaaggttctatgggtgtcgtacctgaggccctccgacctaaaccaggtcacctg
tctgtctctcaacagcgagtttatgaggactttgttcggcttccatggcaaaaccaatcc
ggccagggctctcatactatccctatgggttcctcgacttctgctgtctctactgctttg
gctggtgcatatggttcagggtcaggacaactcaatccaggctactcttccgctcctgga
aatgtaggatttgaagcagtctctcggacattggacatgggctctgatgccactgaatct
aattctgctgcaattcttagttcatcttctattcatattggggcaactgatggtgcaatc
cagcctaattctgaaaacagtgctacaagtgtttcattttcttctgctgctccagcctct
gaacattcaggggatacttctgatactgtaaaggagttgggaatctcttcacaaccaata
tcttcatcagctgcttctgatcgacttgtgaccagtgcttctgagcctacattgaacacg
agggatgcattggataaatatcagattgttgcacagaagttggaagctttggttagtagt
gatggcagagaagtagaaatccagggattaattactgaggttcctgagatcattctcaga
tgtgtaagccgagatgaggctgccttggctgtggcacaaaaggttttcaagggtttatat
gaaaatgcatcgaacaatttccatgttaatgcttgtcttgcaattctagctgctattcgg
gatgtttgcaagcttgtggtcaaagaactcactagctgggtgatctactcagatgaggag
cggaagttcaacaaagatattactgttggccttatacgcagtgaattgctcaatcttgca
gaatacaatgttcatatggcaaaacttattgatggtggaaggaataagggcgcaacggaa
ttttctatttcacttattcaagcattagttgttgaggagtcgaaagttatttctgagctc
cacaatcttgttgatgcgctggctaagcttgctgcaaaacctggatcttcagagtcatta
caacagcttattgagattgtcaggaatcctgttgctaattctgctgtgatatctggattt
actgtgggaaaagaggataagagcagacagtctagagataaaaaggctgcaaatcagtct
atgtctacatctaacagggaagagtacagcattgtggaatctgtggaaccagatcctgct
ggtttccgggaacaggtttccttgttatttgcagaatggtttagaatatgtgaccttcca
ggtgcaaacgatgcagcttctactcattatatcctacaattgcatcaaaatggactgttg
aagggagatgatatgacggaccgctttttccgcatcatcacagaactctctgttgcacat
tgcttgtcttctgaggtgatcaactctggtgcactacaatcgcctcaacaagggcagaat
ttgtccttccttgccattgatatttatgcaaaacttgtattttcaatcttgaaggtggag
cagggatcgaatagatttttccttttatctaagattttggctgtgactgtgaggtttata
cagaaggattcagaggagaaaaaattatcttttaaccctagaccttatttcagactgttt
gtgaactggcttttggaccttgtttcgccagacccgattattgatggtacaaatcttcag
atcctgacggcctttgccaatgctttccataatttgcagccccttaaagttcctgcattc
agctttgcttggcttgagttggttagccacaggagcttcatgccaaaattgctcactgga
aatgctcagaagggttggccctatgttcaacggttgctagtagacttgttccagttcctg
gagccattcttaaggagtgctgaactaggaatgcctgttcactttctttacaaaggtaca
ctaagagtactgctggtgctgcttcatgacttccctgagtttctatgtgactatcatttc
actttttgtgatgtgattcctccaagctgcatacaaatgcgtaatattatcctctctgca
tttccccgcaatatgaggctgccagatccatctactcctaacctgaagattgatttgcta
cccgaaataagggaggctcctcacattctctctgaggttgatgcagctcttaaagcaaag
cagatgaaagctgatgtagacgagtatctgaagaccaggcatcaaggttcttcgttcctg
agtgagttgaagcagagattactactttcaccaagtgaagctgcctctgctggtacccgt
tataacgtaccattgatcaactcccttgtgctttatgctgggatgcaggccatccaacag
ctgcaggcaagagcacctcattcacagtcatcgggaaacactgctcctctagctgtattg
ttggtggatgctgctttggatatttaccagactcttatagtggaactggacactgaaggc
cgatacctctttctgaatgctgttgccaaccaattgcgctatccaaacaaccacacccat
tatttctctttcgtcctactttatttatttgctgaatctaaccaggaaattattcaggag
cagatcacaagagtccttttggaacgcttaatagttaatcgacctcatccatgggggctt
ctgattacttttattgagctcatcaagaatcctcggtacaacttctggaaccgatctttc
ataagatgtgcaccagagattgaaaaactcttcgaatcggtggcaagatcatgcggtggc
ttaaagcctatggatgagagtatggtctcaggctgggtttctgagggcacacactaa
DBGET
integrated database retrieval system
