Ricinus communis (castor bean): 8272218
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Entry
8272218 CDS
T01087
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8272218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8272218
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8272218
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_10
TPR_MalT
ARM_TT21
TPR_14
TPR_8
ANAPC3
TPR_19
DUF627
Motif
Other DBs
NCBI-GeneID:
8272218
NCBI-ProteinID:
XP_002531955
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Position
3:complement(25599382..25609479)
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AA seq
870 aa
AA seq
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MDTKDSSSSPTVAANRDSSTTATTPAAAASGSSSSITEDDAVLSVNAALAKDASLHFQSR
RFVECLAVLYQLKQKKEDDPKVLHNIAIAEYFRDGCSDPKKLLDVLNNVKKKSEQLAQAS
GEQVEAANSAVNKATQGSKGSGATSHQFSAANGGTLVYMDEFDPAVATLNIAIIWFHLHE
YTKALSVLEPLYHNIEPIDETTALHVCLLLLDVALACQDASKSADVLIYLEKAFGVGGVG
QGDGSTAQQQSANLVAKSTSVPSSSSVVDASSSDLATSGNGLENSLSRTLSLSEETLEYE
TMFSLEISGQNLTRPSALSSANDLSRAQVDRTMSSIDLKLKLQLYKVRFLLLTRNLKQAK
REVKLAMNIARGRDSSTALLLKAQLEYARGNHRKAIKLLMASSNRTEMGVSSMFNNLGCI
YFQLGKYHSSSVLFSKALTSSSSLRKDKPLKMLTFSQDKSLLIMYNCGIQHLVCGKPFLA
ARFFQKASLIFYNVPILWLRLAECCLMALDKGLIKAADKSEIVVHVIGKGKWRHLAIDNG
KPRNGYADSIGREDLFLDSNGHPKLSLSLARQCLLNALHLLDSCDINHLKSTLPSSISLE
ENESSDAGSLKNSNHKSLTGHDTRASNVSVGLGQLNSNGDVKEPKGGTSQEIMQNSISYF
EDIHRRENQMIKQALLADLAYVELELENPEKALSAAKCLLELPECSRIYVFLSHVYAAEA
LCVLNKPKEAAEYLSIYMSGGNNVELPFSQEDTEQLRAEKSYDYEESNGGSATAKSSSVE
EPQGMEFLKPEEARGILYTNFATMYAAQGEIERAHHFVSQALSLVPDSPEATLTAVYVDL
ILGRSQAAIAKLKQCSRVRFLPSRVQLNKF
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggacactaaagattcgtcttcttcgccgaccgtcgccgctaatcgagactcgagcacc
actgccaccactccggccgccgccgcctccggttcctcatcatcgattactgaagatgac
gctgttctttctgtaaacgctgctcttgctaaggatgcttcattgcattttcagtctcgt
cgttttgttgagtgccttgccgttttgtatcagcttaaacaaaagaaagaagacgatcca
aaagttcttcataatattgctattgcggaatactttcgcgatggttgttcggacccaaag
aagctgcttgatgtacttaataatgttaagaagaaaagcgaacagcttgctcaagcttct
ggagaacaagttgaggctgcgaacagtgctgtaaataaagcaactcagggatctaaagga
agtggagcaacatcacatcagttttctgctgcaaatggtgggactcttgtttacatggat
gaatttgaccctgctgtggcaacattaaatatcgcaattatttggtttcatcttcatgaa
tacacgaaggcgttgtctgttctagaacccttgtatcacaatattgaacctattgacgag
acaactgcgctgcatgtctgccttttgttgctggatgtggcacttgcctgccaggatgca
tcaaaatctgctgatgtactgatttatctagaaaaagcttttggtgttggtggtgtgggt
caaggtgatggaagcacagcacaacagcaatctgcaaatctagttgcaaaatctacctct
gttccaagcagttcatcagtcgtggatgcttccagttctgatttagcaactagtgggaat
ggcttggaaaattccttatcaagaactttatcattatcagaggagacactcgagtatgaa
accatgttttcacttgagataagtggacagaacttgacgagaccatcagccctctcatct
gcaaatgatctttctagggcccaagtcgatagaactatgtcttcaattgatctgaagctt
aagttgcagctttataaggtacgctttctgcttctcacaaggaatttaaaacaagcaaaa
cgtgaagttaagcttgctatgaacattgcacgtggtagagattcgtccacagctcttctc
ttgaaggctcagcttgaatatgctcgtgggaatcatcgcaaagccatcaaattgctgatg
gcatctagtaatcggacagagatgggagtttcaagcatgttcaacaaccttggttgcata
tattttcagctgggaaagtaccattcatcgtctgttctcttttccaaggccttaactagc
agttcatctcttcggaaagataaacctctgaagatgcttactttctcacaagacaagtct
cttctcatcatgtacaattgtggcatacagcacttggtttgtgggaaaccctttctggct
gctcgctttttccaaaaagcaagtttaattttttataatgttcctatcttgtggctccgg
cttgctgaatgctgtctgatggctttagataagggacttataaaagctgcggacaaatca
gaaattgttgttcatgttataggcaagggaaaatggaggcatcttgctatagataatgga
aagccaagaaatggatatgcagattctattggaagggaagacctgtttttggacagtaat
gggcatcctaaactctctttgtcccttgctcggcaatgtctcctgaatgctctgcatttg
ttggacagttgtgatataaaccatttgaagtctactttgccttctagtatctccttggag
gaaaacgaatcaagtgatgcaggatctctcaaaaactcaaatcacaagagtttaactggc
cacgataccagagcatctaatgtatctgtgggcttaggtcagcttaactcaaatggtgat
gtaaaagagccaaaaggagggacaagtcaggagattatgcagaactctatctcttacttt
gaagatattcataggagagagaatcaaatgattaagcaagctcttcttgctgacttggca
tatgtagagttggaactggaaaatcctgaaaaggccttgtctgctgcgaagtgtcttctt
gagcttccagaatgctcaagaatttatgttttcctgagtcatgtgtatgcagcagaggcc
ctctgcgtgctgaacaagccaaaagaagcagctgaatacttgtcaatttatatgtcagga
ggaaataatgttgagttgccattcagccaggaagacactgagcaattgcgagcggagaaa
agttatgattatgaagaatccaatggaggatcggctactgccaagagctcttccgtggag
gaaccacaaggtatggagttcctcaagccagaagaggctagaggtatcctttacaccaat
tttgcgaccatgtatgcagcacaaggtgagatcgagcgggcacaccattttgtatcacaa
gcattgtcccttgtacctgacagtccagaggccactttgacagcagtttatgtggatctt
atacttggccggtcacaagcggcgattgccaagttaaaacaatgtagtcgagtcaggttc
cttccaagccgtgtacaattgaataaattttga
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