Rhizorhabdus dicambivorans: CMV14_04490
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Entry
CMV14_04490 CDS
T05084
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMV14_04490 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rdi03021
]
CMV14_04490 (rpoB)
03400 DNA repair and recombination proteins [BR:
rdi03400
]
CMV14_04490 (rpoB)
Enzymes [BR:
rdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMV14_04490 (rpoB)
Transcription machinery [BR:
rdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMV14_04490 (rpoB)
DNA repair and recombination proteins [BR:
rdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMV14_04490 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ATE63744
UniProt:
A0A2A4FWP7
LinkDB
All DBs
Position
complement(928137..932501)
Genome browser
AA seq
1454 aa
AA seq
DB search
MATKAVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADNYVSGLEKTLRS
VFPIRDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTDTRS
VLDIKEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFA
ARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNHEKGKLEAGDIV
AISGVNYACRVKAVAGNLVTIEDPTGSIVPGGSIQTAEGEKIARIVRIRMQGMSGEDILN
HFYRTQRYIRGEGGWKVPFVAENWRGQKPAFDVVNAATGEVVFPAGTKISPRAANKAGKD
GLETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTEENLDKLDKAGFDHVDLLDIDH
VSTGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAV
GRVKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELL
ENQYRVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSR
VNKYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDGEGRFVEELISAREAG
EFLMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFV
GTGMEETVARDSGAAIGARRSGIVDQVDATRIVIRATGSVDAGKSGVDIYTLMKFQRSNQ
STCINQRPLVKVGDVVHAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISER
IVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGD
ILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDK
DERAMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIRKGSTIDEAL
LDEVEKREWWKFAVQDDAVQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMN
VGQIFETHLGWAARGLGKQVTEALEVWREANPDAVGGAAPAAVVDRLKHVYGEQYHGEID
ALSGEQVVDMAKVLKNGVPMATPVFDGAREADVAAMLKLAGLDESGQVELFDGRTGDQFD
RKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYG
AAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSI
EDTSDDDGIAEAAE
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcagttccggcgaccgccaagaagcgcatccgcaaggtcttcgggaac
atccacgaagtcgtccagatgccgaacctgatcgaggttcagcgcgaatcctacgagcag
ttcctgcgctcgcgccccgcggacaactatgtctcgggcctcgagaagacgctccgctcg
gtcttcccgatccgcgatttcgccggcacagccgagctcgacttcgtccagtatgagctg
gaggaccccaagtacgacaccgacgagtgccgccagcgcggcatgacctatgcggcgccg
atgcgcgtcacgctgcgcctgatcgtgttcgaggtcgatcccgacacggacacccgttcg
gtcctcgatatcaaggagcaggacgtctacatgggcgacatgccgctcatgaccgagaac
ggcaccttcctgatcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgttcgccg
ggcgtgctgttcgaccatgaccgcggcaagacccatgcctcgggcaaatatctcttcgcc
gcgcgcgtcatcccctatcgcggctcgtggctcgacttcgagttcgacgccaaggacatc
gtcaacgtccgcatcgaccgcaagcgcaagctgccggtgaccagcctgctgcgcgcgctg
ggcgacgcggtgatcgaggtcaaccacgagaagggcaagctggaagcgggcgacatcgtc
gccatctccggcgtcaactatgcctgccgggtcaaggcggtcgccggcaacctcgtcacc
atcgaggacccgaccggatcgatcgtccccggcggcagcatccagaccgccgagggcgag
aagatcgcccgcatcgtccgcatccgcatgcagggcatgtcgggcgaggacatcctcaac
catttctaccgcacccagcgctacatccgtggcgagggcggctggaaggtgcccttcgtc
gccgagaactggcgcggccagaagccggcgttcgacgtggtgaacgccgccaccggcgag
gtcgtcttcccggccggcaccaagatcagcccgcgcgcggccaacaaggccggcaaggac
gggctcgagacgctgctgatcccgaccgaccagatcttcggccgctattcggcctatgac
ctgatcgacgagtcgaccggccgcatctacatcgaggccggcgacgaggtgaccgaggag
aatctcgacaagctcgacaaggccggcttcgaccatgtcgacctgctcgacatcgaccat
gtctcgaccggcccgtggatccgcaacacgctgaaggccgacaaggtcgaggaccgcgac
catgcgctgagcgagatctatcgcgtcatgcgccccggcgagccgccgacgaaggagacc
gccgaagcactgttcgccggcctgttcttcgactccgagcgctatgacctgtcggccgtc
ggccgcgtgaagctgaacatgcgcctcgaactcgatgccgaggacaccgtcaccacgctg
cgctccgaggacatactggccgtcgtcaagacgctggtcgacctgaaggacggcaagggc
gagatcgacgatatcgacaatctcggcaaccgccgcgtccgttcggtcggcgagttgctg
gagaaccagtatcgcgtcggcctgctccgcatggagcgcgcggtgaaggagcggatgtcg
tctgtcgacgtgtcgacggcgatgccgaacgacctgatcaacgccaagccggcggtggcc
gcggtccgcgaattcttcggctcgtcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtgacccacaagcgccgcgtctcggcgctcgggccgggcggcctcacccgc
gagcgcgcgggcttcgaggtccgcgacgtccatccgacccattatggccgcatctgcccg
atcgagacgccggaaggcccgaacatcggcctgatcaactcgctggcgagcttcagccgg
gtcaacaagtacggcttcatcgagacgccgtaccgcaagatcgtcgacggcaaggtgacc
aacgaggtcgtctatctgtccgccatggaagaggccaagcacaccatcgcgcaggcgaac
gccgagctcgatggcgagggccgcttcgtcgaggagctgatctccgcccgcgaggccggc
gagttcctgatggcgccgcgcgatcatgtcaccctgatggacgtgagccccaagcagctc
gtgtcggtcgcggcgtcgctgatccccttcctggagaatgacgacgccaaccgcgcgctg
atgggatcgaacatgcagcgccaggcggtgccgctggtccgcgccgaggcgccgttcgtc
ggcaccggcatggaagagacggtggcccgtgactcgggcgccgcgatcggcgcgcgccgg
tcgggcatcgtcgaccaggtcgacgccacccgcatcgtgatccgggcgaccggatcggtg
gacgcgggcaagtcgggcgtggacatctacacgctgatgaagttccagcgctcgaaccag
tcgacctgcatcaaccagcgcccgctggtgaaggtcggcgacgtggtccacgccggcgac
atcatcgccgacggcccgtcgaccgagttcggcgagctggcgctgggccgcaacgtcctc
gtcgcgttcatgccgtggaacggctacaactatgaggactccatcctgatctccgagcgg
atcgtgaaggacgacgtcttcacctcgatccacatcgacgagttcgaggtgatggcccgc
gacaccaagcttgggccggaggacatcacccgcgacatcccgaacgtcggcgaggaagcg
ctgcgcaacctcgacgaggcgggcatcgtctatatcggcgccgaggtggagccgggcgac
atcctgtgcggcaagatcacgccgaagggcgagagcccgatgacgccggaggagaagctg
ctccgcgccatcttcggcgagaaggcctccgacgtccgcgacacctctctgcggctgccg
ccgggcgtctcgggcaccgtcgtcgacgtgcgcgtgttcaaccgccacggcatcgacaag
gacgagcgcgcgatggcgatcgagcgcgaggagatcgaccgcctgaccaaggaccgcgag
gacgagcgcgccatcctgaaccgcgccaactatgcgcgtctgaaggagatgctgctcggc
cagatcgcgactgccgcgccgaagggcatccggaagggctcgaccatcgacgaggcactg
ctcgacgaggtcgagaagcgcgaatggtggaagttcgcggtgcaggacgacgccgtccag
gccgacctcgaagcggtcaaggcgcagtatgacgacgccgtcggcctgatcgtcaagaag
ttcgaggaccgcgtcgagaagctgcagcgcggcgacgagctgcccccgggcgtgctgaag
atggtcaaggtgttcgtcgcggtgaagcgcaagctgcagcccggcgacaagatggccggc
cgccacggcaacaagggtgtcatcagccgcatcctgccgcaggaggacatgccgttcctg
gaggacggcaccccggtcgacatcgtgctcaatccgctgggcgtgccttcgcgcatgaac
gtcgggcagatcttcgagacccatctcggctgggccgcgcgcggcctgggcaagcaggtg
accgaggcgctggaggtgtggcgcgaggccaatcccgacgcggtgggcggcgcggccccg
gccgcggtcgtcgaccggctcaagcatgtctatggcgagcaatatcatggcgagatcgat
gcgctttcgggcgagcaggtcgtcgacatggcgaaggtgctgaagaacggcgtgccgatg
gcgacgccggtgttcgacggcgcccgcgaagccgatgtggcggcgatgctgaagctcgcc
ggcctcgacgagagcggccaggtggaactgttcgacggccgcaccggcgaccagttcgac
cgcaaggtgaccgtgggctacatctacatgctgaagctccaccaccttgtcgacgacaag
atccacgcacgctcgatcgggccgtacagccttgtcacccagcagccgctgggcggtaag
gcgcagttcggcggccagcgcttcggcgagatggaagtgtgggcgctccaggcctatggc
gccgcctacacgctgcaggagatgctgacggtgaagtccgacgacgtggtcggccgcacc
aaggtctatgaggcgatcgtcaagggtgacgacaccttcgaggccggcatcccggagagc
ttcaacgtgctcgtcaaggaaatgcgctcgctgggcctcaacgtcgaactgtcctcgatc
gaggacacgtccgacgacgacggcatcgccgaggctgcggagtaa
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integrated database retrieval system
