Rhizobium etli CIAT 652: RHECIAT_CH0001741
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Entry
RHECIAT_CH0001741 CDS
T00720
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase protein, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHECIAT_CH0001741 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rec03021
]
RHECIAT_CH0001741 (rpoB)
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0001741 (rpoB)
Enzymes [BR:
rec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHECIAT_CH0001741 (rpoB)
Transcription machinery [BR:
rec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHECIAT_CH0001741 (rpoB)
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHECIAT_CH0001741 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Nup188_SH3-like
Motif
Other DBs
NCBI-ProteinID:
ACE90711
UniProt:
B3PW59
LinkDB
All DBs
Position
1735874..1740013
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR
DGEGWRIPFKPETLKGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAGDD
DLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGIILSNGFDEIPVLGIDHINVGAYIRNT
LSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LTVEDTVRILRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRRIVDGKVTNDVLYLSAMEEAKYYVAQANAEMNPDGSFVDEFVVCRHAGEVMLAPRDSM
NLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIGARRGGVVDQVDATRIVIRATEDLEAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDVVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGQVSIAGPKGFKKGTELSNAVVSEYPRSQWW
MFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGRQIGELIEAYKANGNIEPLRKTIGDVVGAGPKAEQVHEFDDDSVLRLADQWKR
GVSIATPVFDGANEGDVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQANQLPDAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgcaggcgcgtacgcaagttttttggtaagatc
cccgaagtcgcagaaatgccgaacctcatcgaggtccagaaggcgtcctacgaccagttt
ctgatggtggaagagccgaaaggcggccggcccgacgagggtcttcaggccgtcttcaag
tcggtttttcccatcaccgatttctccggcgcctcgatgctggaattcgtgtcctacgag
ttcgagccgccgaagttcgacgtcgacgaatgccgccagcgcgacctgacctatgccgcg
ccgctgaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggataccggcgccaag
tcgatcaaggacatcaaggaacaatccgtctacatgggcgacatgccgctcatgaccaac
aacggcacgttcatcgtcaacggcaccgagcgcgtcatcgtctcccagatgcaccgttcg
ccgggcgtcttcttcgaccatgacaagggcaagagccattcgtccggcaagctgctcttt
gctgcccgcgtcattccctatcgcggctcctggctcgatatcgaattcgacgccaaggac
atcgtctacgcccgtatcgaccgccgccgcaagattccggtgacgtcgctgctgatggcg
ctcggcatggacggcgaggaaatcctcgacaccttctacacgaagtcgctctacaagcgc
gacggcgaaggctggcgcattcccttcaagccggaaacgctgaagggtgccaaggcgatc
accgagatggtcgacgctgataccggcgaagtcgtcgtggaagccggcaagaagctgacc
ccgcgtctgctgcgtcagctttccgacaagggcctgaaggccctgaaggccggcgacgac
gatctctacggcaactaccttgccgaagacattgtcaactactcgaccggtgaaatctac
ctcgaagccggcgacgaaatcgacgagaagacgcttggcatcatcctgtcgaacggtttc
gacgagatcccggttctcggcatcgaccacatcaatgtcggcgcctatatccgcaacacg
ctgtcggccgacaagaacgagaaccgtcaggacgctctgttcgacatctaccgcgtcatg
cgtccgggtgaaccgccgaccatggaatcggccgaagccatgttcaactcgctgttcttc
gacgcggagcgttacgacctctccgccgtcggccgcgtcaagatgaacatgcgtctcgat
ctgaccgtcgaagacaccgtccgcatcctgcgcaaggacgacatcctggccgtggtcaag
atgctggtcgaactgcgcgacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtccgctcggtcggcgagctgatggagaaccagtaccgtctcggcctgctgcgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacacggtcatgccgcag
gatctgatcaacgccaagccggctgccgctgccgtccgcgaattcttcggttcctcgcag
ctctcgcagttcatggaccaggtcaacccgctctcggaaatcacccacaagcgccgcctt
tcggctcttggcccgggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
catccgacccattacggccgcatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcgacctttgcccgcgtcaacaagtacggcttcatcgagagcccg
tatcgccgcatcgttgacggcaaggtgacaaacgacgtgctctacctctccgccatggaa
gaggcgaagtattacgtcgctcaggccaacgccgagatgaacccggatggttccttcgtc
gacgaatttgtcgtctgccgccatgccggcgaagttatgctggcgccgcgcgacagcatg
aacctgatggacgtttcgccgaagcaggtcgtttcggtcgcagccgcgctcatcccgttc
ctggaaaacgacgacgccaaccgcgccctcatgggctcgaatatgcagcgtcaggccgtg
ccgctgctgcgcgccgaagcaccgttcgtcggcaccggcatggagccggtcgtcgcccgt
gactcgggtgctgccatcggcgcccgccgcggcggcgtggtcgaccaggtcgacgcgacc
cgtatcgttatccgcgccacggaagacctcgaagccggcaagtccggcgtcgatatctac
cgcctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgcccgctggtc
accgtcggtgacgtcgtcaaccgcggcgacattctcgccgacggcccgtcgaccgatctc
ggcgacctggcgctcggccgtaacgcgctcgtggcgttcatgccctggaacggctacaac
tacgaagactcgatcctgctctccgagcggattgttgccgacgacgtgtttacctccatc
cacatcgaagaattcgaagtgatggcgcgcgacaccaagctcggtcctgaggaaatcacc
cgcgatattccgaacgtttcggaagaagcgcttaagaacctcgacgaagccggcatcgtc
tatatcggcgccgaagttcagccgggcgatatcctcgtcggcaagatcactccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggcgaaaaggcctcc
gacgtgcgcgacacctccatgcgcatgccgcccggcacctacggcacgatcgtcgaagtt
cgcgtcttcaaccgccatggcgtcgagaaggacgagcgtgcgatggcgatcgagcgcgaa
gagatcgagcgtcttgccaaggaccgcgacgacgagcaggcgatcctcgaccgtaacgtc
tacggccgtttgatcgatatgctgcgcggccaggtctcgattgccggcccgaagggcttc
aagaagggcaccgagctttcgaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaggacgagaaggtccagagcgaactcgaagcgctccgcggccagtac
gacgaatccaagtcgcgccttgagcagcgcttcatggacaaggtcgagaaggtccagcgc
ggcgatgaaatgcctcctggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgt
aagatccagccgggcgacaagatggccggccgtcacgggaacaagggcgtggtctcgcgc
attgtgcctgtcgaggatatgccgttccttgaagacggcacgcatgtcgacgtcgttctg
aacccgctcggcgttccttcgcgcatgaacgtcggccagatcctggaaacgcatctgggc
tgggcttgtgccggcatgggtcgccagatcggcgaattgatcgaagcctacaaggcgaac
ggcaacatcgagccgctgcgcaagaccatcggcgatgtcgtcggtgccggtccgaaggcc
gagcaggtgcacgaattcgacgatgactcggttctgcgtctcgccgaccagtggaagcgc
ggcgtttcgattgcaacgcctgtcttcgacggtgccaacgaaggcgacgtcaacgacatg
ctgcgtctggcgggtctcaaggacaccggccagtcgacgctctatgacggccgtaccggc
gagcagttcgaccgccaggtcacggtgggctacatctacatgctgaagctcaaccacctg
gtcgacgataagatccatgcccgctcgatcggtccttactcgctcgtcacccagcagccg
ttgggcggcaaggcgcagttcggcggtcagcgcttcggcgaaatggaagtctgggcgctc
gaagcttacggcgcggcctacacgctgcaggaaatgctgacggtgaagtcggacgacgtc
gccggccgcaccaaggtctacgaagccatcgtccgcggagacgacacgttcgaagccggt
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctcagcgtcgag
cttgagaacactaagcttgatgaggcgcaggcaaaccagctgcccgacgcggccgagtaa
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