Rickettsia endosymbiont of Culicoides impunctatus: LF885_02805
Help
Entry
LF885_02805 CDS
T10695
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rem Rickettsia endosymbiont of Culicoides impunctatus
Pathway
rem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF885_02805 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rem03021
]
LF885_02805 (rpoB)
03400 DNA repair and recombination proteins [BR:
rem03400
]
LF885_02805 (rpoB)
Enzymes [BR:
rem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF885_02805 (rpoB)
Transcription machinery [BR:
rem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF885_02805 (rpoB)
DNA repair and recombination proteins [BR:
rem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF885_02805 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Terminase_2
RelB
Motif
Other DBs
NCBI-ProteinID:
UCM86169
LinkDB
All DBs
Position
complement(588596..592702)
Genome browser
AA seq
1368 aa
AA seq
DB search
MATQSLSIGKRIRKNFGHINLVASIPNLIEVQKNSYEKGFLQFGVRDFERENKGLQSVLS
SIFPIHDPSNIAYLEFAKYEFDNPKYDVEECTQRGLSYAAPLKVTLRLSIWDIDEDTGAR
EIKGIKEQEVYMGDIPLMTKNGTFVINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKFLY
SARVIPYRGSWLDFEFDAKDVMYFRIDRKRKLYATTLLRAIGMSTSEIIKFYYDTLTCFT
KNGCWATKFIPESITAHRLSNDLVDADTGNIILASGQKITPRLAKKFAQDGVKNILVERE
YLVGKYLSQDLINPDNGEVLAGIGEMITIDMLDSIMTLGILSVDVLAINTQSGPYIRNTL
FADKNQNYESALIDIFRVLRPGEPANIEAAKILFNNLFFEPERYDLSEVGRIKMNSRLEL
NIPESTVILTIEDIKHILKVLVDIKDGKGSIDDIDHLGNRRVRSVGELIENQFRIGLVRM
EKSVLERMSVVELDAVMPHDLVNSKVLVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLS
ALGPGGISRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARVNKHGFIETPY
RKVVDGHVTDEVVYLSAIEEGKYKIAQANAATDQKGLLQEELINCRIDGGNFVMLTPAEI
DYIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIRSDAPLVGTGIEGIVAQ
DSGVSVVALHDGIVEQVDSTRIVVRTKEQKTDGSPGVDIYNLLKFQRSNHNTCINQKPLI
NVGDYVVKGEVIADGPSTDNGEIALGRNVLVAFLPWSGYNFEDSILISERIVKDDVYTSI
HIEEFEIIARDTRLGPEEITRDIPNVSDESLRHLDEVGIVYVGAEVKSGDILVGKVTPKS
ESPMTPEEKLLRAIFGEKASDVRDSSLRVPSGITGTVVEVRVFSRRGVEKDERAIAIEKQ
QIEKLSKDREDELRIIEHFVFMRLEKILTGQIVVSGPKTLKSGQLISDQTLNSLSKGQFW
QLIVEDADVMNEIEQIKRHYDEKKDRLNKRFSSKVDKLQSGDDLPQGALKVVKVFIATKH
KLQPGDKMAGRHGNKGVISRIMPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLG
WAAVNLGKKISSMLDQVHNNKTDIEELKSFVSKVYGHNSTSKDIKKMSNEEIMAFCHNID
KGVYFATPVFDGAKVENVKEMLTMADQDPSGQTSLIDGRTGEYFDRTVTVGYKYFLKLHH
LADDKIHARSIGPYSLVTQQPLGGKSHFGGQRFGEMECWGLQAYGAAYTLQEMLTVKSDD
VVGRIKIYESIVRGDNNFESGIPESFNVMIKEFRSLCLNVKLEDTTTD
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcagtccttatcaattggtaaacgtataagaaagaattttggtcacataaat
ttggtagcatctataccaaatttgattgaggttcagaaaaattcttatgaaaaaggtttc
ttacagtttggagttagagactttgagcgagaaaacaaaggactacaatcagtattaagt
tcaatctttccgattcatgatccctctaatattgcctatttagaatttgctaaatatgag
tttgataatcctaaatatgatgttgaggagtgtacccaaagaggtcttagttatgctgct
ccccttaaagtcacattgcgattaagtatttgggatattgatgaagatactggagcaaga
gaaatcaaaggcattaaagaacaagaagtttatatgggggatatacccctaatgaccaaa
aatggtacctttgttattaatggtacagaaagggtggtagtatcacagatgcataggtca
cctggtgtattcttctatcatgatgaaggcaaagttcactcttcaggcaagtttttgtat
tctgctagggttataccttatagaggatcatggctagattttgaatttgatgctaaagat
gttatgtattttagaatagataggaaaagaaaactttatgctactactcttcttagagct
attggaatgtctaccagtgaaattataaaattctactatgatacattaacctgttttacc
aagaatggatgttgggcaacaaagtttatacctgagtctataaccgctcatagactatct
aatgacttagtagatgcggatactggcaatatcatacttgcatctggtcaaaagattacc
cctcgtctggctaagaaatttgctcaagatggagtaaaaaatattttggtagaacgtgag
tatttagtaggcaaatatttatcacaggatcttattaatccggataatggtgaagtacta
gctggcattggtgaaatgattacaatagatatgctggattctattatgactcttggaatt
ttgtctgttgatgtacttgctataaatacgcaatcaggtccttacataagaaatacctta
tttgctgataaaaaccaaaattatgaatcagcattgatcgacatatttagggtattaaga
ccaggagaaccagctaacattgaagctgctaagatattatttaataatttattctttgag
cctgaaagatatgatctttcggaagttggtcgtattaaaatgaattcaagattggaactt
aatataccagaatctacagttattttaactattgaagatataaaacatattcttaaggtt
ttagtagatataaaagatggtaaaggttcgatagatgatattgatcaccttggtaacaga
agagttaggtcagttggtgaactaattgagaatcaatttaggattggtcttgttcgtatg
gagaaatcagtacttgaaagaatgtccgtggttgagcttgatgctgttatgcctcatgat
ttagtaaattcaaaagttttagtttctgtagtaaaagaattttttagtacttcacaactt
tctcagtttatggatcaaactaatccattgtcagaaataactcataagagaagattatca
gctttaggacctggtggaattagtagggagagagctggatttgaagtaagggacgttcac
cccacccattatggacgtatttgtccaattgaaacaccagaaggacagaatataggtttg
atcaattccatggctacttacgccagggttaataaacatggtttcattgaaactccttat
cgaaaagttgtagatggtcatgtaactgatgaagttgtttacttgtcagcaattgaagaa
gggaaatataaaattgctcaagctaatgcagctaccgatcaaaaaggtttgttacaggaa
gagttaattaattgccgaatcgatggtggtaattttgttatgcttacccctgcagaaata
gattatattgacgttaccccgatgcaagttgtttctgttgctgcctcacttattccattt
ttggaaaatgatgatgctaatagagcattgatgggatcaaacatgcaacgtcaggctgta
ccacttattagaagtgatgcccctttagttggtactggtattgaaggaattgttgcacaa
gattctggagtttcagttgtagccttacatgatggaatagtagaacaagttgattcaact
agaatagtagttagaactaaagagcagaaaacagatggctcacctggtgtagacatttat
aatttattaaaatttcaaagatctaaccataatacttgtattaatcaaaaaccattaatt
aatgttggtgattatgtagtaaaaggtgaagtaattgctgatggaccaagcaccgataat
ggagagatagctcttggtagaaatgttctggtggctttcttaccatggagtggttataat
tttgaagattcaattttaatatcagaacgtattgtaaaagatgatgtttacacttcaatt
catattgaagaatttgaaataattgctagagatactagacttgggcctgaggaaatcact
cgtgatattccaaatgttagtgatgaaagtttacgtcatcttgacgaagtaggtatagta
tatgttggggcagaagtaaaatcaggcgatattttggtgggtaaggttactcctaaaagt
gagtcacctatgactccagaagaaaaattacttcgagctatttttggagaaaaggcttcg
gatgttcgggactcctctttacgtgttccttctgggataactggtacagtagtggaggta
cgagtattttcccgtaggggagtagaaaaagatgagcgtgctatagctattgaaaaacaa
caaattgaaaaattatcaaaagatagagaggatgaacttcgcatcatagagcattttgtt
tttatgcgtttagagaagattctaacaggacaaatagttgttagtggtcctaaaacctta
aagagcggtcaattaattagcgaccaaacccttaattcattatcaaaaggacagttttgg
cagctgattgttgaagatgctgatgtaatgaatgaaattgaacaaattaaacgtcattat
gatgaaaagaaagacaggctcaataagcgttttagtagtaaagtagacaagttacaaagt
ggcgatgacttaccgcaaggggcacttaaagttgtgaaagtatttattgcgactaaacat
aagctgcaacctggagataaaatggcaggaagacacgggaataaaggtgttatctctcgt
attatgccagaagaagatatgccatttttagaagatggtacagtagtggatatagttctt
aacccacttggcttaccttcacggatgaatataggacagattttagagactcatcttggt
tgggcggcagtaaatcttggtaaaaaaatatcttctatgttggatcaagttcataacaat
aagacggatatagaagagcttaaatcttttgtatcaaaggtatatggacataattcaacg
tcaaaagatataaagaaaatgtctaatgaagaaattatggcattttgtcataatatcgat
aagggagtatattttgcaactccagtttttgatggggcaaaggttgagaatgtaaaagaa
atgctaactatggcagatcaagatccatcaggtcaaactagcttaattgatggtagaaca
ggagaatattttgatcgtactgttacagttggctataaatatttcctaaaactgcaccat
ttggctgatgataaaattcatgctcgttctatcggtccttatagcttggtaactcaacaa
ccattaggtggtaaatcacattttggtggtcagagattcggtgagatggaatgttggggc
ttgcaagcttatggtgctgcttatacattacaagaaatgctaactgtaaaatcggatgat
gtggttggcagaattaaaatttatgaatctattgttcgaggtgataataattttgaatct
ggtatccctgagtcatttaacgtaatgatcaaagagtttagatccttatgtttgaatgta
aaacttgaagataccacaacagattaa
DBGET
integrated database retrieval system
