Rhodococcus erythropolis PR4: RER_17330
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Entry
RER_17330 CDS
T00881
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RER_17330 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rer03021
]
RER_17330 (rpoB)
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_17330 (rpoB)
Enzymes [BR:
rer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RER_17330 (rpoB)
Transcription machinery [BR:
rer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RER_17330 (rpoB)
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RER_17330 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RsgI_N
Motif
Other DBs
NCBI-ProteinID:
BAH32441
UniProt:
C0ZVQ6
LinkDB
All DBs
Position
1866032..1869538
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGRILAVSSQTKAVSGIPGAPKRVSFAKVREPLEVPGLLDVQTDSFEWLIGAQSWRER
AAALGDNAVSGGLEDILAELSPIEDFNGTMSLSFSDPRFDEVKASTDECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDMSVDK
STEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQITERFG
FSEILMATLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGR
YKINKKLGLNAGQPIVASTLTEEDIVATVEYLVRLHAGDTSMTAPGGVEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIREFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRRVVDGQVTDEVDYLTADEEDRHVVAQANSAIDREGR
FTDSKILVRRKGGEVEFVASSDIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSEAPLVGTGMELRAAVDAGDVIITEKTGVVEEISADYVTVMADDGSRKTYRMR
KFARSNQGTCANQRPIVDEGQRVEAGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIG
AEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVF
SRDEDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLSDGTPV
DIILNTHGVPRRMNIGQVLETHLGWIGKTGWNIQIASDGTRPDWAATLPEEMLSAPADSN
IATPVFDGAKEDELTGLLGATLPNRDGEQMVGPDGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAITMADGD
DEDLERAAANLGINLSRNEAATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctctagccagaccaaggcagtttccggaatcccc
ggagccccgaagagggtttcgttcgcgaaagttcgcgaacccctcgaagttcccgggctt
cttgacgtacagacagattcgttcgagtggctgatcggcgcgcagagttggcgtgaacga
gcagcggcactcggcgacaatgcagtgtccggtggtctcgaggacatcctcgcggagctt
tctccgatcgaggatttcaacggcactatgtcgctgtccttctccgaccctcgattcgac
gaggtcaaggcctcgacggacgagtgcaaagacaaggacatgacctacgcggcgccgttg
ttcgtcaccgcggagttcatcaacaacaacactggtgagatcaagagccagacggtcttc
atgggagatttcccgatgatgaccgacaagggcaccttcatcatcaacggcaccgagcgt
gtggtcgtctcgcagctcgtgcgttcccccggtgtgtacttcgacatgagcgtcgacaag
agcaccgagaaggatctgcacagcgtcaaggtgatcccgggtcgcggcgcatggctcgag
ttcgacgtcgacaagcgcgacaccgttggtgtccgtatcgaccgcaagcgtcgtcagcct
gtcaccgtcctgctcaaggcactcggctggaccacggagcagatcacggagcgcttcggc
ttctccgagatcctcatggccacgctggagaaggacaacaccgccggcaccgatgaggcg
ttgctcgacatctaccgcaagctgcgtccgggcgagccccccaccaaggagagcgcgcag
accctgctggagaacctgttcttcaaggacaagcgctacgacctcgctcgcgtgggtcgt
tacaagatcaacaagaagctcggcctgaacgcgggtcagccgatcgttgcatccacgctc
accgaagaagacatcgtcgccaccgtcgagtacctcgtgcgtctgcacgcaggtgacacc
tcgatgacggctccgggcggcgtcgaggttcccgtcgaggtcgacgacatcgaccacttc
ggcaaccgtcgtctgcgtaccgtcggcgagctcatccagaaccagatccgcgtgggcctg
tcccgcatggagcgtgtggttcgtgagcgcatgaccacgcaggacgtcgaggcaatcacg
cctcagacgctgatcaacatccggcccgtcgtcgctgcgatcagggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgt
cgtctgtccgccctcggcccgggtggtctgtcccgtgagcgcgccggcctcgaggttcgc
gacgttcacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggttcgctgtcggtctacgcccgcgtcaacccgttcggtttcatcgag
accccgtaccgtcgcgtcgtcgacggacaggtgaccgacgaggtcgactacctgaccgct
gacgaagaagaccgccacgtagtcgcgcaggccaactcggccatcgaccgcgagggtcgc
ttcaccgactcgaagattctcgtccgccgtaagggtggcgaggtcgagttcgtcgcgtcc
tccgacatcgactacatggacgtttcgccgcgtcagatggtgtccgtcgcaaccgcgatg
attccgttcctcgagcacgacgatgcaaaccgtgccctgatgggcgccaacatgcagcgt
caggctgtcccgctggttcgcagcgaggcacctctcgtcggaaccggcatggagctgcgt
gcagctgtggatgccggcgacgtcatcatcaccgagaagaccggtgtcgtggaggagatc
tccgcggactacgtcacggtgatggctgacgacggaagccgcaagacgtaccggatgcgc
aagttcgcgcgttccaaccagggcacgtgcgccaaccagcgtccgatcgtggacgaggga
cagcgtgtcgaggccggccaggttctggccgacggcccttgcaccgagaacggtgagatg
gcgctgggcaagaacttgctcgtcgcgatcatgccgtgggaaggccacaactacgaggac
gcgatcattctgtcgcagcgtctcgtggaagaggacgtcctgacctcgattcacatcgag
gagcacgagatcgatgcccgcgacaccaagctcggtgccgaggaaatcactcgcgacatc
ccgaacgtctccgacgaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggt
gccgaggttcgtgacggcgacgtgctggtcggaaaggtcacgccgaagggcgagaccgag
ctgacccccgaagagcgcctccttcgcgccatcttcggtgagaaggctcgcgaggttcgt
gacacgtccctcaaggttcctcacggtgagaccggcaaggtcatcggaatccgcgtgttc
tcacgtgacgaagacgacgatctgcctcccggtgtcaacgagttggtccgcgtctacgtg
gcacagaagcgcaagatccaggacggcgacaagctcgccggccgccacggtaacaagggc
gtcatcggcaagatcctgccgcaggaagacatgccgttcctctcggacggcacgcctgtc
gacatcatcttgaacacgcacggtgtcccgcgtcgtatgaacatcggtcaggtcttggag
acccacctcgggtggatcggcaagaccggctggaacattcagatcgcgtccgacggcact
cgtcccgactgggctgcgaccctgccggaagagatgctgtccgctccggccgactcgaac
atcgccaccccggtgttcgacggtgcgaaggaagacgagctcaccggtctcctcggcgcg
acgctgccgaaccgtgacggcgagcagatggtcggacccgacggaaaggccaccttgttc
gacggccgctccggcgagccgttcccgtacccggtctcggtcggttacatgtacatcatc
aagctgcaccacttggtcgacgacaagatccacgctcgttcgaccggtccgtactcgatg
atcacgcagcagcctctcggtggtaaggcccagttcggtggccagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggcgcggcttacacgctgcaggaactgctgaccatc
aagtcggacgacgtggtcggtcgagtcaaggtgtacgaagccatcgtcaagggcgagaac
atccccgaacccggcatccccgagtcgttcaaggtgctcctcaaggagctccagtcgctc
tgcctcaacgtggaggtgctgtcctcggacggcgcggccatcacgatggcggacggcgac
gacgaggacttggagcgggccgcagcgaacctgggcatcaacctgtccaggaacgaagct
gcgacggtcgacgacctcgcgaactag
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