Rhopilema esculentum: 135684923
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Entry
135684923 CDS
T09994
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like isoform X1
KO
K18735
protein SMG9
Organism
res
Rhopilema esculentum
Brite
KEGG Orthology (KO) [BR:
res00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
res03019
]
135684923
Messenger RNA biogenesis [BR:
res03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135684923
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
NB-ARC
AAA_22
MMR_HSR1
AAA_18
MeaB
ABC_tran
DmmA-like_C
Motif
Other DBs
NCBI-GeneID:
135684923
NCBI-ProteinID:
XP_065056701
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MDDNIGRGKSREEDGRDRRGERRDRGGRKRERRGRDSRDKDRGKRMERSRPSPMEKQDST
PQASAPMKQPIILTKPMAEKVLQEAQSKEAQGKEQHPVVIAIQKRDENKPPASLLSTNSG
TSRPSTIDSTKSQSQTLDSLSRREERSEQGKAQMVTSSQTSSTAQKLDQVVTGLAALHAT
PRVTMKHSSKVVDDSFYWSDKCLTSLLEQTDFVVVGVVGYQGVGKSTILSMLGDSKNEDA
LKSGLLFRSQSKQDVEKSLHRTEGIDMFVTPERLIFLDTQPLMSPSILDRFLRHERKVPS
DFGTAETCVEMQSLQILTFLFAVCHVVLVVTDHFSDNSLLKLLKTAEMLKPSTVAHSGQE
GSSASNAENLDEYFPHIVLVHNRCDHKMFDAKQLNHVCQTVDKFFGQSRLKLRGSASIIR
TEILPCAKLKLLSDFQDLNIFMLPEYDERESQDPKLLVTTYRGHPSFSLLVSALRHQLLS
IPRQHLTHHPLTERSWFHYAARTWDSIKKSPLLSEYQRLLAT
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggacgacaacatcggtaggggaaagtcgagagaagaagatggaagggatagaagggga
gaaaggagagacagaggtggaaggaagagagaaagaagaggcagggacagtagagacaaa
gatcgggggaagaggatggagaggagccgaccaagccccatggaaaaacaagattctaca
cctcaagcctctgccccaatgaaacaaccaattattctaacaaaacctatggctgaaaag
gttttgcaagaagcacaaagtaaagaggctcagggaaaagagcagcacccagttgttatt
gcaatccaaaaaagggatgaaaataaaccaccagcttctcttttatcaacaaacagtggc
acatcaaggccaagcaccattgattcaaccaagagtcagtcacaaacactggattccttg
tcacggcgggaggagagaagtgagcaagggaaggctcaaatggtcacaagttcacaaaca
agctcaacagcccaaaaactggatcaggttgttactggacttgctgctttgcatgcaacg
ccacgagtgaccatgaaacattcttccaaagttgttgatgactcattttactggagtgat
aagtgtcttacttctcttctggaacaaactgactttgtcgttgttggtgttgttgggtac
caaggtgttggcaaatcaaccattctatccatgctgggagattcaaaaaatgaagatgcc
cttaaaagtggacttcttttccggtcccaaagcaagcaagatgttgaaaagtctcttcac
agaaccgagggtattgatatgtttgtgacaccggaaagactcatttttctggatactcag
cctctgatgagtccgtcaattctggaccgttttttacgtcacgagaggaaagttccttct
gattttggaacggcagaaacttgcgtcgaaatgcagtcgttgcagattttgacctttttg
tttgctgtgtgccatgtcgtgctggtggtgacggaccatttttcagataatagcctgtta
aagcttttaaaaacagctgaaatgctaaaaccatcgaccgtcgcccactcgggacaagaa
ggctcttcggcgtccaacgctgaaaacctagatgagtacttccctcatatcgttcttgtc
cataaccgctgcgatcacaaaatgtttgatgccaagcagctgaatcacgtctgtcaaact
gttgacaaattctttgggcagtcgaggctaaaactccgaggaagtgcatcaataattaga
acagaaattttgccatgtgccaagctgaaacttctcagtgattttcaagatctcaacata
ttcatgctaccagaatacgatgaaagggagtcccaagacccaaaattactagttacaacg
tatcgtggtcatccgagcttttcgctgttggtgtcagcattacgtcatcagttgttgtca
atccctagacaacacttaacgcatcatccactcactgaacgaagctggtttcattatgcg
gcaagaacttgggattctatcaagaaatcgcctcttttatccgagtaccaacgactgtta
gcaacatag
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