Rhopilema esculentum: 135691393
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Entry
135691393 CDS
T09994
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
res
Rhopilema esculentum
Pathway
res03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135691393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
res03019
]
135691393
Messenger RNA biogenesis [BR:
res03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135691393
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135691393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
135691393
NCBI-ProteinID:
XP_065065316
LinkDB
All DBs
Position
Unknown
AA seq
2479 aa
AA seq
DB search
MTSGPCLDGLSLALSQISCLIIDLSKKNFKSNVSDLKNLIHKFGTEAERHLLRCLFSYVD
LTFEKGGNKDTPQITLLIQEFQELLIHPNFVSLICYCFDHIDILKKPNILTPNLLSNLGR
LLKLTKVQEVVFGIALQSCGTQDLRFLGDQFVKQKLPDLLKSYIESDIGSSQEAIGLSDV
AIEVLHLLLTYLNNCQKTDLNIKPEDEAAFLDSLRRDFPKERVPVVLSPLLYKEEGDKDE
FSYRINLDPGTMPRTGADIKLCDIMEELGYSCCRSHDECKEALTRYGVANINSQCVARVL
GMMGKTVSGLEGNGTLQAAAGGYKRFEDQGPSPASWNVEVFVDTVKDILPSLNWRQVILD
LDFPGFLIKTPDAIRLILHAFMRATGDVFPVEAIYKSWNNTYGQLTWIENSLSDPHAFCF
ADYQCRLVKVEILKSPPDDSNKEIMTWRSLELMETLLRLSEVGHYEAVLKLFAFPVKNCP
DLLLLALLQVNTTWHTLRNDLVSMLMPLFLGNHPNSMSVLHYAWNGQGQSHTIRHLVMQA
MADWYLKADAKNDQVEQQTKLSRILDVAQDLKALSMLLNSTPFSFVIDLAALASRREYLK
LDKWLNDKYREHKEQFANALVNFLKRRCPNLIGINPDKDIPKAVQLPAETVTTMLACLQP
QVSVLTPEIAATFKIMVANHGLPQKPRPNPLTMPVKRPGHDSGLSTPPLSGVQTDPFTFG
VSGQTSSQMGGFGAHPLAGTALGASSTFGGLGSLTSAIQPPKPSQSGNTLLSGSNGIQAS
SGFSGGSIGSSSFSTQTSFIHQLQQGSASQSGGLINGNTVDNLQSLASSLNSVGSLKRGP
LGSASLGGFTSYQQQQQQQQQQQQQQQQMTSSTQNRQHVERLKQVAIGDLSAVFPGMDQN
FSKEIEDESNTYFQRIYNQPPGTAISIDEVLDMLKRFKDSSIKKERDVFICMLRNVFEEY
RFFPHYPDKELRITACLFGGIIEQGLVTYMALGVALRYVLEALRKTPGSKMYMFGTTALD
RFKTRLKDYPHYCQHLASIPHFKEFPPHLVDYIVFGQRNQEPPSATRTGQSESPLFGGRP
LSSTGRLSSFSSSSPTPSQSSTLLTSAFSTSIASVSTPISPISSAISSMAITRTNTTISA
TASSETTSTSNTSAAISRKEPSIANTTNIDTLLGATEPAEIKQPPDSIQDKIHFIFNNIS
NSNLTQKAEELSQLIQQEYYPWLAQYFVMKRVSIEPNFHQLYTDFLKAIDIGDLSKQVIH
ETFRNIKVLLRSDKGPANFSDRSLLKNLGHWLGMQSLASDKPILYEDLEVKSLLIEAFFK
GQQELLYVVPFVAKVLESCGKSKVFRPPNPWLMGVMGVLSELHQMPDLKLNLKFEVEVLC
QTLNLDLKDVTPAEVLKDQEILGKIDHQLTFPEKEKLGSENQLGQTAAPPPPLFSYQEIN
VSAGAAGLAPYIQINQNIPLFQQYPHLKQCIRPAIERAVQELLSPVVERCLKICLTTVEM
IVKKDFALDPEESRTRTAAHHMARNITAGMAMITCKELLQQSLNSHIKSNLLATLRGANA
QQKEQLEHVASAVAVDNLELACAFIQKSSVEKCLMEIDKSLLSEYEIRKLARSESRRYCN
TNVLTYQAERMPEQIRMKVGGVTSSQMSVYEEFAKSIPGFLPPEATGAPEPFPKPLQEPI
TALFGNSQQDPNMPDDVVHILGKCAAEIEQHIHHMEQTMHQMMIPPPNPHLGQLHNLLDM
VVNARVTRDNASALSLIRKAVEGILETMLPTDTEMALRYKDCHLIVLRGFQDPRGYGPLW
TARQVSRVLGELPAELRFNIEGIDLLIRAHLINVGRDFDPLLTQWIDGGQNFRAVNFAMQ
LCRLYLLDEKNRSPITDNDLTNTLEALWRVSQGRQGTEGLSSLLDSVHPHVGLQNQQSFM
SQYQNDPLEKGSVPGLPSSLSQGLIGHEFEDPPGLYEKVDYLLKEWVRLYHHASAGRYSE
KAFQAFVQQLHQYGILKTDDLITRFFRLCTEICVSITYKALNEYAQNISQARTKCFTNTD
AYCRLIALLVKHSGDAQNNITKINVLNRVLGIIGNVLLQDHELRKVDFHQLPYQRMFVIL
LLELNAPETVLEAINFPVLSCFGNVLHDLRPSRAPGFAYAWLELVSHRTLMSKLLLNSPQ
QKGWIIYHQLLIDLFKFLAPFLRNVELAKQTHLLYKGTLRVLLVLLHDFPEFLCDYHFSF
CDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLTDIARPPRILTNFAAAIQPSNF
KKDLDSYLKTRAPVTFLSELRTYLQVSNEPGTRYNVALMNALVLYVGTQAIAYIQSKSGT
PSISTITHSSHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEAN
SEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNHNYKFWNHDFVHCAPEIEKLFESV
ARSCMQQKQPNRNGSDSQE
NT seq
7440 nt
NT seq
+upstream
nt +downstream
nt
atgacttctggtccatgcttggatgggttgtcgctggcgctgtcccagattagctgcttg
attatcgacctatctaaaaaaaacttcaaaagtaatgtatcagatttgaaaaaccttatt
cataaatttggaactgaggctgaacgacatttgcttcggtgtttgttttcgtatgttgac
ttaacttttgagaagggtggaaataaggacacaccacagattacattactcattcaagaa
tttcaagagcttcttattcatccaaattttgtgtcactcatttgctactgttttgatcat
attgatattttgaagaagcctaacatcctgacaccaaatttgttgagtaatttgggtaga
cttttgaagttgacaaaagttcaagaagttgtttttggtattgcactgcaaagttgtgga
actcaagacttgcgatttctaggtgatcaatttgtaaagcagaagctcccagatctattg
aaatcctatattgaatcagacattggtagtagccaagaagcaattggtctcagcgacgtt
gcgattgaagttcttcacttgctgttgacctacttgaataactgtcaaaagactgatctg
aacattaagccagaagacgaagctgcttttcttgattccttaaggagagatttccctaaa
gaaagggtgccagtggttttatcgccccttctttacaaggaggaaggcgacaaggacgaa
ttcagttacagaattaacctggacccaggaacaatgccacgaacaggggcggatataaag
ttgtgcgacataatggaggagttaggctatagctgttgcagaagccatgatgagtgcaaa
gaagctcttactagatatggtgtcgcaaacatcaactcgcagtgtgtcgcaagggtgcta
ggcatgatgggtaagacggtcagcggtctagaaggaaacggcactttacaggctgctgct
ggaggctataaaagatttgaagatcaaggtcctagccctgcgtcgtggaatgtagaggtt
tttgtcgatacagtcaaagatattcttccgtctttaaactggagacaagttattctcgat
ctagactttccaggttttttgataaaaacaccagatgccatacgactaattcttcatgca
tttatgagagcaactggtgatgtttttccggtagaggccatttacaaatcatggaataac
acttatggacagctgacttggatcgaaaacagcttgagtgacccacatgcattttgtttc
gctgattaccaatgccgactagtgaaagttgagattttgaagtctcctccagatgattca
aacaaagaaataatgacttggaggtctttagagctaatggaaactttgcttcgcctctca
gaagttggacactatgaagcagttctgaaactgtttgcttttcctgttaaaaattgtcca
gatcttctactgcttgccctcctccaagtgaatacaacatggcatacattgaggaacgac
cttgtatctatgctaatgccattgtttcttggcaatcaccccaattcaatgagtgttttg
cactacgcatggaatggccaggggcagagtcacaccattcgccacttggtaatgcaggcc
atggcagattggtacctgaaagcagatgctaaaaatgatcaagttgagcaacaaacaaaa
ctttctagaattctcgatgttgctcaggatcttaaggccttgtccatgcttctgaattca
acgccgttttctttcgttattgatcttgctgctttggcatcgaggcgagagtacctcaag
cttgacaagtggctcaacgacaagtacagagaacataaagagcaatttgcaaacgcactg
gtgaattttttaaagcgaagatgccctaatcttatcggcataaatcctgataaggatatc
ccaaaagctgttcaattgccagcagagacagtaacaacgatgttagcctgcttacagccg
caagtcagtgtgttaactccagagattgccgcaactttcaagataatggttgccaatcat
ggtctgccacaaaagccaagaccaaaccctcttaccatgcctgttaagagacctgggcat
gacagtggactctctactccaccgcttagcggtgttcaaacggacccattcactttcggt
gtctcgggacagactagttcgcagatgggaggttttggtgctcaccctttagccggaaca
gcacttggggcatcttcaacatttggcggtctcggtagtctaacatcggcaatacagccc
ccaaagccttctcaaagtggtaacactctgctatctggttcaaatggaattcaggcgtcg
agtggattcagtgggggaagcattggttcgtcatctttttcaacacaaacaagttttatt
catcagcttcaacaaggatcagcttctcagagtggaggtttgattaatggcaacactgtc
gataacttgcagtcactagcttcatcattaaattcggtcggttcattgaagcgaggacct
ctgggctctgcttccttaggcggatttacttcctaccaacagcagcagcagcagcagcag
cagcaacaacaacaacaacaacagatgacttcttcgacccagaacagacagcatgttgag
aggttgaagcaagttgcaatcggggatttgtctgctgtgtttcctggaatggatcaaaac
ttttccaaagaaattgaagatgagtccaatacgtatttccaaagaatttacaatcagcca
ccagggacggcgatatctattgatgaagtgcttgatatgcttaagagattcaaagattcg
tctattaagaaagaacgggatgttttcatttgtatgctgagaaatgtgtttgaagagtac
aggttttttccgcattatccagacaaagagttgcgcattacagcatgtttgtttggtgga
ataatcgaacaaggcttagttacgtatatggcattgggagtggcactgcgatatgttttg
gaagctctgcgtaaaactccaggcagcaaaatgtacatgtttggaacaactgcccttgac
agatttaagacaagacttaaagactatccacattactgccagcaccttgcttccatacct
catttcaaagaatttccaccccatctagtcgattacattgtttttggccaaagaaatcag
gagcctccgagtgctacgaggaccggtcaatctgaatcacctttattcggtggacgtcct
ctttcatcaactggcagattgtcgagtttttcatcaagttctccaacgccgagccaatca
agtacgctgctgacgtcagccttttcaacttcgattgcttctgtctcaactcctatttct
ccaatctcgagtgccatttcaagtatggcaataacaagaactaataccacgatctcggct
acagcttcaagcgaaacaacttctacaagtaacacatctgccgccatcagcaggaaagag
ccttctattgccaatacaaccaatattgatacacttcttggagcaactgaacctgctgaa
atcaaacagcccccagattcaatacaagacaaaatccatttcatcttcaacaacatttca
aacagcaatctaactcaaaaggcggaagagctctcacagttgattcagcaagaatactac
ccgtggctggcacagtattttgttatgaaaagagtcagcattgagccaaatttccatcaa
ctctacactgattttttgaaagcaattgatattggtgatctatcgaagcaagtgatccat
gagacattcagaaacattaaggtacttttgcggtcggataaaggccctgcaaacttttct
gacagatctctgttaaaaaatcttggccactggctgggaatgcagtcccttgcttctgat
aaacctattttgtacgaggatcttgaggtcaaatctcttctaatcgaagcatttttcaag
ggacaacaggagcttttgtatgtcgtgccttttgttgcaaaagttttggagtcttgtggt
aaaagcaaggtattcaggccaccgaatccttggctgatgggcgtcatgggggttttatca
gaactgcatcaaatgccggaccttaagttaaatttgaaattcgaagttgaagtgctttgc
caaaccttgaacttggatttgaaggatgtgactcctgctgaagtgctgaaagatcaagaa
attcttggaaagattgaccatcaactcacattccctgaaaaagaaaaactaggctcagaa
aaccaacttggacagacagccgctccccctccgcctcttttttcatatcaagaaatcaac
gtatctgctggagcagccggccttgctccatacattcaaatcaaccaaaatattcctttg
tttcaacaatatcctcacctcaagcagtgcatcagaccagcaatcgagagggctgtacaa
gagcttctctcccctgttgttgaaaggtgcctcaagatttgcctaacaactgttgaaatg
atagtgaagaaagatttcgctttggaccctgaggagtcccgaacaagaactgcagcacac
cacatggctagaaacatcacagctggaatggcaatgatcacgtgtaaagaactgctgcag
caaagtttgaacagtcatattaaaagcaatctacttgctactttacggggagctaatgct
cagcaaaaagagcaacttgaacatgtggcatcagctgttgctgtggataatctagaactg
gcttgtgcatttattcagaagtcatccgttgagaaatgtttgatggaaatagataagtcc
ttactctcagaatatgaaatcagaaagttagctcgctcagaaagtcgacgatattgtaac
acaaatgtcctgacttatcaagcagaaaggatgccggagcaaatcagaatgaaggttgga
ggtgttacatcaagccagatgagtgtctatgaagaatttgcaaaatccataccaggattt
ctacctcctgaggcaactggtgctcctgaaccatttccgaagccattgcaagagccaatt
acggctctttttggaaattctcaacaggacccaaatatgccagatgatgttgtacacatc
cttggtaaatgtgctgcggagatagagcagcacattcaccacatggaacaaacaatgcac
caaatgatgatacctccaccgaacccccatcttggtcagctgcataatcttcttgatatg
gtggtgaatgccagggtaactcgggataatgcttcggccctatcacttattagaaaggcc
gttgaaggcattctggagacaatgcttcccacggacactgagatggcgcttcgatacaag
gactgtcatcttattgttcttcgaggatttcaagaccctcgtggctatggtccactgtgg
acagcaagacaagtatcaagagttttgggagaattgccagccgaactaaggttcaatatt
gaaggcatagatctgctcattcgtgcacatttgatcaacgtcggtcgggatttcgaccct
ctgctaactcagtggattgacggtggccaaaacttccgtgctgtcaattttgcaatgcag
ttgtgtcgactgtatcttctagatgaaaagaacaggtccccgataacagataacgatctg
accaatacgttggaagctctttggcgcgtctcgcaagggagacaaggaaccgagggattg
tcaagcctccttgacagtgtgcatccgcacgtcggccttcaaaatcagcaaagtttcatg
agtcagtatcaaaatgatcctttggaaaaggggtcagtgccaggattaccctcttctttg
tctcaaggattaattggacatgaattcgaagatcctccaggattatacgaaaaggtcgac
tatcttttgaaagaatgggttcgcttgtatcatcatgctagtgctggcagatatagtgaa
aaagcgtttcaggcttttgtgcaacagcttcatcagtatgggattctcaaaaccgatgat
ttgataactcggtttttccgactgtgtacagagatttgtgtcagtataacgtacaaagcc
ctaaacgaatacgcccagaacatatcgcaagcaagaacaaaatgcttcacaaatacagat
gcatactgtcgactaattgccttactggtaaagcactcaggagatgcccaaaacaacatc
acaaagataaatgttttgaatagggtccttggcattataggaaacgtattgcttcaagac
catgaattgcggaaagtcgattttcaccagcttccataccaaagaatgtttgttattctt
ttgctcgagctcaacgcaccagagacggttttagaagcgatcaatttcccagttttatca
tgctttggaaacgttctacatgatttgaggccgtctcgtgctccaggctttgcttatgca
tggctcgaactggtttctcaccgaacattaatgtccaaactgctcctgaattcaccacag
caaaagggatggataatctatcaccagcttttgattgacctcttcaagtttttggctcca
tttttaagaaatgtcgaacttgcgaagcagactcacttattgtacaagggaacgcttcgc
gtcctactggtcttgctacatgatttcccagaatttttgtgcgattaccacttcagtttt
tgcgatgtcattccccctaactgcatccaaatgagaaatctgattcttagtgccttccca
agaaatatgagattgcctgatccattcacacccaatcttaaggttgatttgttgacagac
attgctagaccaccaagaatacttaccaatttcgctgctgctatccagccaagtaacttc
aaaaaggacttggattcataccttaagacaagagcaccggtcacgttcctgtctgagctt
cggacatatctgcaggtttcaaacgagccgggaaccagatacaatgtcgctttaatgaat
gccctcgtcctgtatgttggcactcaagcaatcgcatatattcagagcaaaagcggaacg
ccatccatatcaactataacccattcatcacacatggacattttccagaatttggcggtt
gatcttgatactgaagggcgttacttgttcctgaatgcaatagcaaatcagctgaggtat
cctaacagccacacgcattatttcagctgcactctgctgtatttgttcgctgaagccaat
tctgaggctatccaagagcaaattaccagggtgctccttgaaagattgattgtgaacagg
ccacatccctggggacttctaattacatttattgagctgatcaagaatcataattacaag
ttttggaaccacgattttgttcactgcgctcctgaaatagagaagctctttgaatcagtc
gctcgtagctgtatgcaacaaaagcaacctaaccgaaacggaagtgactcccaagaataa
DBGET
integrated database retrieval system
