Cupriavidus pinatubonensis JMP134: Reut_A1360
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Entry
Reut_A1360 CDS
T00268
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
reu
Cupriavidus pinatubonensis JMP134
Pathway
reu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
reu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Reut_A1360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reu03400
]
Reut_A1360
Enzymes [BR:
reu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Reut_A1360
DNA repair and recombination proteins [BR:
reu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Reut_A1360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAZ60730
UniProt:
Q472F3
LinkDB
All DBs
Position
1:complement(1462369..1465821)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPDAAPAFPFANLPLVKPGLRHSMAGLPGSADALAIAAYARQHRERVPMLAVVCANAVDA
QRLADEIPWFAPETRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPAS
TALYRLAPPSFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
YPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
REVFEGDPSKSPIYKDIGNGVPSAGIEYYLPLFFESSATLFDFLPADTQLAFVGKVDEAI
RRFWTDTTQRYDFMRHDRERPLLPPPQLFLSEEQFFIAAKPLARLVLQSEPAADGQPAFA
ASVPDVSVNRRAEDPLVNLESLLLDKATRVLMCADTAGRRETLLQLFAESGLRPQPVDDF
AAFLAGESHFSIAVAPLHSGFMLPSAKFAFVTEAELYAGTARRAGRRKQEQATAVDSMVR
DLAELKIGDPVVHSDHGIGRYHGLVSLDMGQGDEEFLHLEYDKGSKLYVPVHQLHVISRY
SGADPDTAPLHHLGSGQWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSPKDYET
FAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQV
AMLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTKKEIDAAVKQINEGTVDIVIGTHK
LLSDEVKFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRD
FSVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRAKLAEL
VPEARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFG
LAQLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAGRRLEAIQQMEELGSGFYLAMHDLEI
RGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKALKAGKEPDLMAPLAATTEINLGTPALL
PNDYCADVHERLSLYKRLANCETPERVDDIQEELIDRFGRMPDQAQALVETHRLRIAAAP
LGVRKIDAGEASISVQFVPNPPIDALRIIELVQKNRHIKLAGQDKLRIEAKMPDVAVRAQ
TIKQTLRQLA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgccgcacccgccttcccgttcgccaacctgcccctggtcaagcccgggctg
cgccatagcatggcgggcctgcccggctccgccgacgcactcgccattgccgcctacgcg
cgccagcacagggagcgcgtgccgatgctggccgtggtctgcgccaacgccgtcgacgcc
cagcggctcgccgatgaaatcccgtggttcgcgcccgaaacgcgcgtacgcctgctgccg
gactgggaaacgctgccctacgatagcttttctccccaccaggacctggtgtcggaacgt
ctcgcgacgctgcacgacatccagaccggccagtgcgacgtgatgctcgtgccggcctct
acagcgctctaccggctagcgccgccgtcattcctggccgcctatacgttcttcttcaag
cagggggaacggctggacgaagccgcgctcaaggcgcagttcacgctggcaggctacgag
cacgtcagcgccgtgatgcgtccgggcgaatacagcgtgcgcggcggcctgatcgacctg
tacccgatgggttcggcgctgccgtaccgcatcgatctcttcggcgacgagatcgaaacc
atccgcgcctttgatcccgacacgcaacgcagcctgtacccggtcaaggaagtccggctg
ctgccgggccgcgagtttccgcttgatgaagccgcccgcacggcattccgcggccgctgg
cgcgaagtcttcgaaggcgaccctagcaagtcgcccatctacaaggacatcggcaacggt
gttccttcggccgggatcgagtactacctgccgttgttcttcgagtccagcgcgacgctg
ttcgactttctgccggccgatacccagcttgccttcgtcggcaaggtggacgaagccatc
cgccgcttctggacggataccacgcagcgctacgacttcatgcggcatgaccgcgagcgc
ccgctgctgccgccgccgcaactgttcctgtccgaggagcagttcttcattgcggccaag
ccgctcgcgcggctggtactgcaaagcgaaccggcggcggacggccaacccgcgtttgcg
gcgagcgttcccgatgtctcggtgaaccgtcgcgccgaagatccgctcgtgaacctggaa
tccctgctgctggacaaggccacgcgcgtactgatgtgcgccgataccgccggccgccgc
gagaccctgctgcagctgttcgccgaaagcggcctgcgcccgcaacccgtggacgacttt
gccgcgttcctggctggcgagtcgcacttcagcatcgccgtggcgcccctgcacagcggc
ttcatgctgccgtccgcgaaattcgccttcgtcacggaagccgaactctacgccggcacc
gcgcgccgcgcgggccgccgcaaacaggaacaggccaccgccgtcgattcgatggtgcgc
gacctggccgagctgaagatcggcgacccggtggtgcacagcgaccacggcattggccgc
taccacggcctggtgtcgctcgacatgggccagggggacgaggaattcctgcatctcgaa
tacgacaagggcagcaagctgtacgtgccggtgcatcagctccacgtgatctcgcgctat
tcgggcgctgatccggacaccgcaccgctgcatcacctcggctcgggccagtgggacaaa
gccaagcgcagggctgcgcagcagatccgcgatacggcggccgaactgctgaacctgtac
gcacggcgcgccgcgcgcgaaggctttgcgttcccactctcccccaaggactacgagacc
ttcgccgaaagcttcggcttcgaggaaacgcccgatcaggccgcggcgatcgctgccgtc
atcgccgacatgacctcgggcaagcccatggaccggctggtgtgcggcgacgtcggcttc
ggcaagaccgaagtcgccttgcgcgcggcgttcgtcgccgtgctcggcggcaagcaggtt
gccatgctggcgccgaccacgctactcgccgagcagcatttccagacgctgtcggaccgc
ttcgccgaatggccggtgcgcatcgtcgagctgtcgcgcttcaagacgaagaaggaaatc
gacgcggcggtgaagcagatcaacgagggcacggtcgatatcgtgatcggcacgcacaag
ctgctctcggatgaagtgaagttccagcgcctcggcctcgtcatcatcgacgaggagcac
cgctttggcgtacgccagaaggaagcgctgaaaacgctgcgcgccgaggtcgacgtgctg
acgctcacggccacgccgattccgcgaacacttggcatggcgctcgaaggcctgcgcgat
ttttccgtgattgccacagcgccgcaaaaacgcctggccatcaagaccttcgtgcggcgc
gaggaagacggcgtgatccgcgaagccatcctgcgcgagctcaagcgcggcggacaggtg
tatttcctgcacaacgaagtcgagaccatcgagaataagcgcgcgaagctggccgaactg
gtgcctgaagcgcgcattgccgtggcccacggccagatgcacgaacgcgagctggaacgc
gtgatgcgcgacttcgtctcgcggcgcgacaacatcctgctgtgcacgacgatcatcgag
accggcatcgacgtgccaaccgccaacaccatcctgatccatcgcgccgacaaattcggt
ctcgcgcagcttcaccagttgcgtggccgcgtcggccgctcgcaccatcaggcctatgcg
tacttgctcgtgcatgatgtggatggccttaccaagcaggcggggcgccggctcgaggcc
atccagcagatggaagaactgggttcgggcttctacctggcgatgcacgacctggaaatc
cgcggcgccggcgaggtgcttggcgacaagcagtccggcgaaatccacgagatcggcttc
cagctctacaccgacatgctgaacgcagcggtcaaggcgctcaaggccggcaaggagccg
gacctgatggcgccgctcgcggcgaccaccgagatcaatctcggcacgcccgcgctgctg
cccaacgactattgcgccgacgtgcacgaacgcctgtcgctgtacaagcggctcgcgaac
tgtgaaaccccggagcgcgtcgacgacatccaggaagagctgatcgaccgcttcggccgc
atgccggaccaggcgcaggcgctggtggaaacccatcggctgcgcatcgccgcggcaccg
ctcggcgtgcgcaaaatcgatgcgggcgaggcgtcgatcagcgtacagttcgtgccgaat
ccgccgatcgatgcgctgcggatcatcgagctcgtgcagaagaaccggcatatcaagctc
gcggggcaggacaagctgcgcattgaagccaagatgcccgacgtggccgtgcgcgcgcag
accatcaagcagacgctgcgccagctggcatag
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