Candidatus Reidiella endopervernicosa: HUE57_07105
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Entry
HUE57_07105 CDS
T06650
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rev
Candidatus Reidiella endopervernicosa
Pathway
rev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUE57_07105 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rev03021
]
HUE57_07105 (rpoB)
03400 DNA repair and recombination proteins [BR:
rev03400
]
HUE57_07105 (rpoB)
Enzymes [BR:
rev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUE57_07105 (rpoB)
Transcription machinery [BR:
rev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUE57_07105 (rpoB)
DNA repair and recombination proteins [BR:
rev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUE57_07105 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
QKQ26074
UniProt:
A0A6N0HUJ0
LinkDB
All DBs
Position
1251336..1255412
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKRPSILEVPYLLATQLDSYRKFLQAGEEVQGRTEAGLHAAFTSV
FPIVSYSGNAHLEYVSYRLGEPVFDVKECQQRGMTFAAPLRVRVRLVIYDKDAPAGSKTI
KDIKEQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDLLFVRIDRRRKLPVTILLRALGFTNPEILDMFFETNAFHIDG
ESVNLDLVPERLRGETATFDIKVKGKVLVEAGRRITARHIREMDKAGVTSLEVPAEYLLG
KAISHDVVDQETGELICKANDEITEELFGSLVQAGVGDIQTLYTNDLDHGPYISSTLRTD
ATQSELEAQVEIYRMMRPGEPPTKEAAQTLFNNLFFNAERYDLSGVGRMKFNRRLRRDED
TGSGELSKEDIIEVIKELIDIRNGNGTVDDIDHLGNRRIRSVGEMAENVFRVGLVRVERA
VKERLSLAETEGLMPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLAVYARTNSYGFLETPYRKV
DDGKVTDQVDYLSAIEEGQFIIAQANATLDDNGALSDELVSARHLNEFTMTTPDQVQYMD
VSPKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGVERTVATDSGV
TEVALRGGVIESIDASRIVVRASDEETVAGESGVDIYNLTKYTRSNQNTCINQRPLVKPG
DKILRGDVLADGPSTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVQEDRFTTIHIE
ELTCVARDTKLGSEEISADIPNVGEGALSKLDESGIVYIGAEVKPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVEKDSRALSIEETELE
GFKKDLNDQFRIMEGDAYQRVEKILLGKLSDGGPNKLKAGDKVTKSYLADLPKEKWFEIK
LRNEESGEQLDAIADQLKSLRKDFDAKLNEKRSKITAGDDLAPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVISTIVPVEDMPYLEDGTTADVALNPLGVPSRMNVGQILETHLGWAA
KGVGKRIGQMLDTQREIAEMREFLDKVYNTSGKQEDLDSFSDEEIVELAGNLRKGVPMAT
PVFDGAAEVEIKRMLELAGLPESGQHTLYDGRTGDAFDRPVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTRM
YKNIVDGDHRMEAGMPESFNVLVKEIRSLGINMELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctacagctttaccgagaaaaaacgcattcgcaaggatttcggcaagcgccccagt
attctggaagtgccctatctgctcgcaacccagctggattcttatcgaaagtttctgcag
gccggtgaagaggtccaggggcgaacagaggcggggctgcatgcagcctttacttcggta
ttcccgattgtcagctactcgggtaatgctcacctcgagtatgtgagctatcgtcttggt
gaacccgtattcgacgtgaaagagtgtcagcagcgaggtatgacctttgctgctcctctg
cgtgttcgtgtgcgtctggttatctacgacaaggatgcaccagctggttcgaagaccatc
aaggatatcaaggagcaagaggtctacatgggtgagctacctctgatgaccgacaacggt
acctttgttattaacggcactgagcgagttatcgtctctcagctgcaccgttctcctggc
gttttcttcgatcacgacaaaggtaagactcactcatcaggtaagctgctcttctcggct
cgagttatcccttaccgtggttcatggctcgactttgaattcgatcccaaggatctactg
tttgtccgtattgaccgtcgtcgcaagctgccagtaacgattctgctgcgcgcacttggg
tttaccaatccagaaattctcgacatgttcttcgagacaaatgccttccatattgatggc
gaaagcgtaaaccttgatctggttccagagcgtctgcgtggtgagactgcaacctttgat
atcaaggtgaagggtaaggtgctggttgaagctggtcgccgtattaccgcacgtcatatc
cgtgagatggataaagcgggtgtcacctcgctggaggttcctgctgagtaccttcttggt
aaagcgatttcgcatgatgttgttgaccaggagactggtgagctgatctgtaaggccaat
gatgagatcaccgaggagctgtttggtagtctggtgcaggcgggtgtcggcgacatccag
accctctacaccaacgatctcgaccacggcccctacatctcctctaccctgcgtaccgac
gcgactcagtctgagcttgaggcccaggttgagatctaccgcatgatgcgtcctggtgag
ccaccgaccaaggaggctgcgcagaccctgtttaataacctcttctttaatgcagagcgt
tacgacctctcaggtgtcggtcggatgaagttcaatcgtcgtctcagacgtgacgaagat
accggctctggtgagctatctaaagaggacatcattgaggtcatcaaggagttgatcgac
atccgtaacggtaatggcaccgtcgatgatatcgaccatctcggtaaccgtcgtattcgt
tctgtaggtgagatggcggagaacgtcttccgcgtcggtctggtgcgtgtcgaacgtgcg
gttaaggagcgtctcagtctggcagagaccgaaggtctgatgccgcaggagctgatcaac
gccaagcctgttgctgcagcaattaaggagttcttcggatccagtcagctgtctcagttt
atggatcagaataacccactctctgaggtgacccacaaacgtcgtgtttcggcgctcggt
ccgggcggtctgacccgtgaacgtgccggctttgaggtgcgcgatgtgcatccgactcac
tacggccgtgtctgcccaatcgagacccctgaaggtccaaacatcggcctgattaacacc
ctcgcggtctatgcacgtactaacagctacggtttcctcgagaccccttaccgtaaggtt
gatgatggcaaggtgaccgatcaggtcgactacctttctgctatcgaagaggggcagttc
attatcgctcaggcaaatgccacgcttgatgataatggtgcgttgagtgatgagctggtc
tcggcgcgtcatttgaatgagttcaccatgaccaccccagatcaggtccagtatatggac
gtctcgccaaagcagatcgtatctgttgctgcggcactgattccgttccttgagcacgat
gatgctaaccgcgcgctgatgggatcgaacatgcagcgccaggcggtgccaactctgcgt
gccgacaagccgcttgttggtaccggtgttgagcgtaccgttgcgaccgactctggtgta
accgaggtagcgctacgtggcggtgtgattgagtcgattgatgcttcacgaatcgtggtg
cgcgccagcgatgaagagaccgttgccggtgagtcgggtgtcgatatctacaacctgacc
aaatacacccgttcaaatcagaacacctgcatcaatcagcgtccactggttaaaccgggc
gacaagattctgcgcggtgacgtattggccgatggcccctcaaccgatctcggtgagcta
gcgctgggtcagaacatgctggtcgcgttcatgccgtggaacggttacaactttgaggat
tcgatcctcatctctgaacgtgttgttcaggaagaccgctttactactatccatatcgaa
gagctgacctgtgtggctcgtgataccaagcttggttctgaagagatctcggctgatatc
ccgaatgttggtgagggcgcactctccaagctggatgagtcgggcatcgtctacatcggt
gctgaggttaagccgggcgacatcctggtcggtaaggttacacccaagggcgagacgcag
ctgactccggaagagaagctgttgcgtgcgatcttcggtgagaaggcgtctgatgttaag
gacacctcactgcgcgttccatctggtatggacggtaccgttatcgatgtgcaggtcttc
acccgtgatggtgtggagaaggattcacgtgcgctctccattgaagagactgaactcgag
ggattcaagaaggatctcaacgaccagttccgcattatggagggcgatgcctaccagcgt
gtagagaagatcctgcttggcaaactctctgatggtggcccgaacaagctcaaggcgggc
gataaggtcaccaagagctatcttgctgatctgcctaaggagaagtggttcgagatcaag
ctgcgcaacgaagagagtggtgagcagctagacgcgatcgctgatcagctcaagtcgctg
cgtaaggatttcgacgccaagctcaacgagaaacgctccaagatcactgcgggtgatgac
ctcgcaccaggcgtactgaagatggttaaggtctaccttgccgttaagcgtcgcatccag
ccgggtgacaagatggcgggtcgtcacggtaataagggtgttatctcaaccatcgttccg
gttgaggatatgccttacctcgaagatggcaccaccgctgatgttgcactcaacccgctg
ggcgttccttcgcgtatgaacgtcggtcagattcttgagacccacctcggctgggcggcc
aagggtgtcggtaagcgcattggacagatgctcgatacccagcgagaaatcgctgagatg
cgtgagttcctcgataaggtctataacaccagtggtaagcaggaagatctcgatagcttt
agcgacgaggagatcgttgagctggccggtaatctgcgtaagggtgtgccgatggcaaca
cctgtattcgatggcgcggctgaggtcgagatcaagcgcatgctggagctggcgggacta
cccgagagcggtcagcacaccctctacgatggtcgtaccggtgacgcctttgatcgtccg
gtcacggttggttacatgtatatgctcaagctgaaccatctggtcgacgacaagatgcat
gcgcgttctaccggtccatacagcctggttacccagcagccgctcggtggtaaggcgcag
tttggtggtcagcgcttcggtgagatggaggtctgggcgctggaggcttacggcgcagcc
tacaccctgcaggagatgctcaccgtcaagtccgatgatgttaacggtcgtactcgtatg
tacaaaaatatcgttgatggtgaccacagaatggaggcgggcatgcccgaatccttcaat
gtactggttaaggaaattcgctccctcggtatcaatatggagctggagcaggactag
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integrated database retrieval system
