Rhynchophorus ferrugineus (red palm weevil): 143198936
Help
Entry
143198936 CDS
T11283
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143198936 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfg03019
]
143198936 (Not1)
Messenger RNA biogenesis [BR:
rfg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143198936 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143198936 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
143198936
NCBI-ProteinID:
XP_076264685
LinkDB
All DBs
Position
Unknown
AA seq
2369 aa
AA seq
DB search
MNLDSLSFTLSQISYLIATLTKKNYKQVVGELLEVVTLHGLEADRHLVQCLFSSVNFSES
TTKVTTLSPHVQVILDQCARLFNTPSLLTSVCYITDRPLVNQKNLKVGPHFFSQLSKHLH
LTAVQEVLFALALRHSSISEVSCLAQSHLRHSVPLLVQSYIETEGSSRQHEGGLHETTPE
VLHLILSAILEAPKEVGVTNDIHTTFLNILQKDFPKERVPVVLAPLVYPEQFELAPEMTS
EGPGLSAAILDTSLADLVKEIGYGFTSSPDECRNTILKLGGRDIAPSTVARVLAVMCRTH
SGLDDSYIDSAIGPFAKGVPEVRPSWNVEIFVQALKEVSPSLQWNNVVAELDHPEFLIKD
RQGLCILITALKQGLQSLGFHPDTFPVDHFYKRWSNLEGQFSLIQQILKNPDVFCFADYR
CVSVAVDVLKTPPEQDSKELANWRSLNLIELLLNISEFALYNHVQELFKVPLHSCPDVLV
LALLQISGPVTLLRQELLTNLIPIFLGNHPNSGIILHHAWHSQSINIKPVIMHAMAEWYV
RGECDQTRLSRILDVAQDLKALSMLLNAQSAQSYPFIIDLACLASRREYLKLEKWLSDKI
NEHGEAFITACIKFLHRRCPQLGKDDCLNKSVQLPSDTLTTMIVCLQRCANNVSPECQEA
IIGIINSCTMLLKSRQQNPLIRSRGMDASLNPSVFANQIYNHGAVDQIQNLGTNLTNLNL
AGPANTTFNLQGGLGPLVQSPGSPSRLLSGPSNSPFPMLPMHQGPVVSSSSLVLGVNQIG
NIGRLGPTANLDKTRLSDYNLFPEGSPHVSKEIEDEANNYFQRIYNHPPNPYLSIDEVLN
MLKRFQDSHNKREKEVFNCMLKSLFEEYTFFPQYPDKELQITAQLFGGIIERGIVTSYIM
LGLALRFVLEALKKPEGSKMYYFGIAALDKFKGRLKEYHKYCEHVRTIPHFSDFPQHLQE
YVEYGLQGMEPPTKPDGPVLPASLAAMLAPPNVSMSQVYKNNSTVSSTVSSKTSTTPAST
LGSRPSIANATNIDTLLVATEKEEKAIAPPESLQDKTAFIFNNLSQLNLKTKCDELRDLV
VEEYYPWLAQYLVMKRASIEFNFHGLYSNFLDTLNIIEIYKMVVKETFRNIRVLLRSDKA
IANFSDRSLLKNLGHWLGMLTLARNKPILQIELDLKSLLMEAYHKGQQELLYVVPFVAKV
LESCSKSKVFKPPNPWTMALMSVLAELHSEPDLKLTLKFEIEVLCKNLEIDVAQLKPAVF
LKDPDRIRKIEYQLSQPAKKEPTLSSSQSNSLAEPELANIIAGQATSSPVMVMQNISTTP
TSALTAPPEPRFSYSDIQVNGMQSLHTHIIISPNIVLFQTHSQLKGLVRTAVERAVQEWI
PPVVDRAIKISLQACENIIRKDFALEPDEERMRLAAHYMVRNFTAGMVMITCRDQLLTAI
NTHLKQALNDHLPTPTAHGKDMIEQAASIVASDNMELACAFVQKTAVEKAIPEIDKRLMN
EYELRRIARKEGRCYCDAMALTYQECMPEPIRLKVGSLTGTQMAVYEEFARNIPGFLPSE
RDAAILMQKPSLTAPMEPQAHTNSNFAVNQAVLGSDDTSLLFEKLTSDVEQFIQLTNAQT
QYSHMYQNILVIRDCLFQFLRTRDVSPPQAIVQKCVESLQDCLVAPLSDTDPVVLRFKEV
IVRILKSIQGYFNQQWTNKVVTRYLTECREEQQRYNLEAVDTMIKSGLVNVPQYDLALAQ
CLENGLNYMGVSFAMQLVDLYIINDRSGQFVTESDLCNTIEVLAKIHAHTRQPPEGLGNL
IDTLRQNHDTPFCGDRAPMGPTVHIHNGILQVRAPNYEDPPGLVEKTDFLLREWINIYNS
QHQGRDSTKAFSIFVHQMNVHGILKTDDLITRFFRLSTQLCVETVYRALLDKSNANMTLI
RPKCYHTLDAFVRLVSLLVKHSGDANNTTTKIHLLNKVLGIVAGCLLQDHDTRTVDFQQM
PYQRIFTMLFLELNAPEPILEAINLHVLTAYCHTFHILRPSKAAGFCYAWLELISHRVFI
GRMLATTPQQKCWSLYAQLLVDLFRYLAPFLRNAELAKPVTMLYKGTLRVLLVLLHDFPE
FLCDYYYGFCDVIPPNCIQMRNLILSAFPRTMRLPDPFIPNLKVDMLPEISYAPRINTNI
SLTISPAQFKKDLDSYLKARAPVTFLSELRSNLQISNEPGVRYNISLMNALVLYVGTQAI
AYIRNKGLTPSMSTIAHSAHMDIFQNLTVDLDTEGRYLFFNAMANQLRYPNSHTHYFSCT
FLYLFAEANTEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTYKFWQHQFVHCAP
EIEKLFESVARSCFVKTSVQLQQEAEGQE
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttgattcattatcatttactttgtctcaaataagttatttaatagccacctta
acaaaaaagaactacaagcaagtagtaggagaacttttggaggtagtcactttgcatggt
ctcgaggcagaccgtcacttggtgcaatgtctgttttcttcagtaaacttttctgaatcc
acgaccaaagtcactactctctcgccgcacgtccaggtgatattggatcagtgtgctaga
ttgtttaacacgccgtccttgctaacatcggtctgttatattaccgaccgaccattagta
aaccaaaagaatttaaaagtagggccacattttttttctcaactgagtaagcacttgcat
ttaactgcagtccaagaagtactgtttgctctagcacttcgccattcttctatatctgaa
gtatcgtgcttagcccaatctcatctacgacatagtgttccccttttggtgcagtcttat
atagagacagaaggcagtagcagacaacacgagggtggtttgcacgaaaccaccccagaa
gtgttacatctcattttgtcagccatattagaagcccctaaggaggttggtgtaactaac
gacatacacaccacatttctgaatattctacagaaggattttcctaaggagcgcgtcccg
gttgttctagctcctttggtttacccagagcaatttgaattagcacccgaaatgacttcc
gaaggaccagggttatctgcagctatcctcgacacgtcgttagcagatcttgttaaagag
attggctatgggttcacgtcgtcgccagacgaatgcagaaacactattctgaagctggga
ggtcgcgatatcgccccgtcaacagtggcgcgcgtactggctgtcatgtgtcgtacgcat
agtggactcgacgactcttatatcgactctgccataggaccgttcgctaaaggcgtaccc
gaagtaagaccatcatggaacgtggagatttttgttcaagctttgaaggaggtttcgcca
tccctgcaatggaacaacgtcgtagctgaactggaccatccggaattcttaatcaaagat
cgacaaggtttgtgcattttaataaccgcactgaagcaaggtttgcagtcattaggcttt
catccggatacgtttcccgtcgaccacttctacaaaaggtggtcaaacttggagggacag
tttagtctaatccaacagatcttaaaaaatcccgatgtattttgtttcgccgactaccgg
tgcgtatctgtggctgtcgatgtattgaaaaccccaccggaacaagacagcaaagagctg
gccaattggagatctttaaatctcatcgaattattactgaatatttctgaatttgcacta
tacaatcacgtgcaggaactgtttaaggtgccgttgcacagttgcccggatgtactagtg
ttggctctgttgcaaatatcaggccctgttacccttctcagacaagaattattgaccaat
ttgatacctatattcctagggaatcaccccaattctggcattattctacatcacgcttgg
cacagtcagagtatcaacataaagccggttattatgcacgcaatggcagagtggtatgtc
agaggagaatgtgaccagacacgcttgtcacgcattttggacgtagcacaagacttgaaa
gcgctttcaatgctactgaacgcccagtctgctcagtcatacccgttcataatagacctg
gcttgcctcgcctctcgaagagaatacttgaagttagagaagtggctgtccgacaaaatc
aacgaacacggcgaagcttttatcacggcatgcattaaattcttacacaggcggtgcccc
cagttgggaaaggatgactgtctcaataagtcagtccaattaccgtcggatacgttgacg
acgatgatagtgtgtttgcagcgatgcgcaaataatgtcagtccagaatgccaggaagcg
attattggcattatcaatagttgtacaatgttgttaaagtcaaggcaacaaaatccgctg
attcgaagccgaggcatggatgcatctttgaacccttcagtttttgctaaccaaatatac
aatcatggcgccgttgatcaaatacaaaatctgggaaccaatttaaccaatttgaatttg
gccggccccgccaatacgacttttaacttgcaaggtggtttagggccgttagtacagtcg
ccagggtccccatcccgattgctcagcggtccgtcaaatagcccgtttccgatgttgccc
atgcaccaaggtccggtcgtttccagctcatcgctggtcctgggcgttaatcaaatcggt
aatataggaagattaggaccgaccgccaatttagacaaaactagattgtccgattacaat
ttgtttcctgaaggatctcctcatgtatcgaaagagatcgaagacgaggcaaataattac
tttcaaaggatttacaatcatcccccgaacccatatttatccatcgatgaagtacttaac
atgctgaaacggtttcaagactctcacaacaagagagaaaaggaagttttcaattgtatg
ttgaaaagtctctttgaagaatacacattttttccccaatatccagacaaagaactacag
attaccgcccaactttttggaggcatcatcgaaaggggaatagttacgtcgtacataatg
ttaggactagcattgcgtttcgtattggaagcgttgaaaaagccggaaggatccaaaatg
tattattttggtatcgcagccttagacaaattcaaaggtcgattaaaggaataccacaaa
tattgtgaacatgtcagaactattccgcattttagcgattttccccaacatctgcaagaa
tacgtcgaatatggtttacaaggaatggaaccgcccacaaaaccggacggtccggtttta
ccagcgagcttagctgcgatgttagcacccccgaacgtgtctatgtcgcaagtttacaag
aacaattcaacggtgagcagtacggtctctagcaaaactagcacgacacctgcgagtact
ctgggtagtcgaccttccatagcgaacgctaccaacatcgatactctccttgtggccact
gaaaaagaagagaaagcaatagctccacctgagtctcttcaagataagacggcgtttatt
ttcaacaatttaagtcaactaaatttaaagacaaagtgtgacgagcttcgcgatttagtt
gtcgaagagtactatccttggttagcacaatatttggtcatgaaacgcgcttctatcgag
ttcaactttcacggtctctactccaacttcctggataccttgaacataattgagatttat
aaaatggttgttaaagagacttttaggaatattcgagtactactgaggtccgataaagcc
atagccaatttttccgacaggtcattgttaaaaaatttgggccactggctaggaatgctg
acattggcacgcaacaagcctattttgcaaatcgaactggatttaaaatcgcttctgatg
gaagcctatcataaaggacaacaggaattgctttatgtagtgccgtttgtggctaaggtt
ttggagtcctgttcaaagagcaaggtgttcaagcctccaaacccctggaccatggcattg
atgagcgttctggcggaattgcattctgagccggatttaaaattgacgctaaagttcgaa
attgaagtactttgcaaaaatcttgagatcgacgttgcccagctgaaacccgcggtattc
cttaaggatccagatcgaatcagaaagatcgaatatcaattatcacaaccggctaaaaag
gagccgactctatcttcgtctcaaagcaatagtctcgccgaaccggaactggccaacatc
atcgccggccaagcgaccagttctccggtaatggtaatgcaaaacattagtacgacgcca
acttcagcgctgaccgccccacccgagccccgattcagttactcagacattcaagttaac
ggaatgcagtccttacacacacatattatcatttcgcccaatattgtcctatttcaaacg
cactcgcagcttaaaggtctggtgcgtactgcggtggagcgagccgttcaagaatggatt
ccaccggttgtcgatcgagccataaaaatttctttgcaggcctgcgagaatatcattagg
aaagactttgccctagaaccagacgaggaaaggatgcgcctggctgctcattacatggtc
cgaaattttaccgccgggatggtaatgattacttgccgtgatcagctgttaacggccatc
aatacacacttaaaacaagctctaaacgaccacttgcctacgcctaccgcccacggaaag
gacatgattgaacaagcagccagcatcgtggccagcgacaacatggaactggcatgcgct
ttcgtccagaaaactgcggtcgagaaggccattcctgaaattgacaaaaggttgatgaat
gaatatgaactaagaagaattgctaggaaggaagggcgatgctactgtgacgctatggca
ctaacctaccaagaatgcatgccagagccgatccgactaaaggtgggtagtttaacgggt
acccagatggcggtttatgaagagttcgccaggaacatccctggatttttaccgagcgaa
agagacgcagctattctgatgcagaagcctagcctaacagcccctatggaacctcaagct
cacacgaactctaactttgccgtcaaccaagccgttttgggaagcgacgatacatcgtta
ctgttcgaaaaacttaccagcgatgtggaacagttcattcaattgacaaacgcgcagacg
caatacagccatatgtatcaaaacatattagtcattagggactgtcttttccagttctta
agaaccagagatgttagtccgccacaggcaatcgtacaaaagtgcgtcgaaagtctgcaa
gattgtcttgtcgcacccttaagcgataccgatcctgtagttttaagattcaaagaggtc
atcgtgcggattttaaaatctatccaaggatatttcaaccagcaatggacaaataaggtc
gttaccagataccttactgaatgccgagaagaacaacagagatataacctcgaagctgta
gatacaatgattaaatcgggactggtgaacgttccgcaatatgatttggctctagctcag
tgtttagaaaacggtctgaattacatgggagtcagttttgccatgcagctggtggaccta
tatatcatcaacgatagatcaggccagtttgtgacagaaagcgatctatgcaacacgatc
gaagttttggccaagattcacgcgcataccaggcaaccgcccgaaggtcttggaaacctg
attgatacgcttagacagaaccacgacacgcccttctgtggcgacagagcaccgatgggt
ccaacggttcacatccacaatggtatattgcaggtcagggccccaaattacgaggacccc
ccgggactagttgagaaaaccgactttcttctacgggagtggataaacatttataattct
caacatcaaggacgggattctaccaaggcctttagcatctttgttcatcaaatgaatgtg
cacggcattctaaaaactgacgatctgataaccagattctttcgattgtcgacgcaactc
tgcgtagagacggtttatagagctctgctagataaatccaacgccaatatgactttaatt
cgccccaaatgttatcacacgcttgacgccttcgttcgactggtgtcgttgctggtgaaa
cattctggcgatgccaataacactacaaccaagatccatttgctgaacaaagttttgggt
atagtggccggttgcctgctacaagatcacgacacaagaacggtagacttccaacagatg
ccttatcagagaattttcaccatgttgtttttggagttgaacgcgcccgagcccatctta
gaagctattaatttgcatgtgctcaccgcttattgtcacacgttccacatattgagacct
tccaaggccgccggcttctgctacgcctggctcgagctgatatcccaccgagtcttcatc
ggccgcatgttagcgactacgccgcaacaaaaatgctggtcgctgtacgcgcagcttcta
gtggatctctttagatatttggctccgtttttgcgaaacgccgagctagccaaacctgtg
acgatgctctataagggcaccctcagggtgttgttagtgctgctgcacgacttccccgag
ttcctttgcgattattactatggtttctgcgacgtgatcccgcccaattgcattcaaatg
agaaacctgattttatcggccttcccgcgcaccatgaggctaccagatcccttcattcct
aatttgaaggtagatatgctgccagagatctcgtacgcgcctaggataaacaccaatata
tcactcaccatctctcccgctcagtttaagaaggatctggactcatacttgaaagcgcgg
gctcctgtcaccttcctctcggaactccgaagtaatttgcagatatcaaatgagcccggc
gtgagatacaacatttcgttgatgaacgcgctggtgctgtacgtcggcacccaagccatc
gcttatataaggaacaagggcctgactcccagtatgtctacgatagctcacagcgctcac
atggatattttccagaatctgactgttgacttggatacagagggcaggtatttgttcttc
aatgccatggcgaatcagttgcggtaccccaacagtcacacccattacttttcttgtacg
tttttgtacctgtttgccgaagccaataccgaagttattcaagaacaaatcacgagggta
ttgttggaacgattgattgttaacagaccacacccgtggggtttactcatcactttcatt
gaattaattaagaaccccacgtacaaattttggcaacatcaatttgttcactgcgcccca
gagattgaaaagctgtttgaatcggtggccaggtcgtgttttgtgaaaacttccgtgcag
cttcagcaagaggcggaaggacaagaatga
DBGET
integrated database retrieval system
