Reinekea forsetii: REIFOR_03126
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Entry
REIFOR_03126 CDS
T05208
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
REIFOR_03126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfo03021
]
REIFOR_03126
03400 DNA repair and recombination proteins [BR:
rfo03400
]
REIFOR_03126
Enzymes [BR:
rfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
REIFOR_03126
Transcription machinery [BR:
rfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
REIFOR_03126
DNA repair and recombination proteins [BR:
rfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
REIFOR_03126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ATX78245
UniProt:
A0A2K8KU21
LinkDB
All DBs
Position
complement(3422614..3426696)
Genome browser
AA seq
1360 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLEPVMDIPYLLAIQLDSYRSFLQADFDASERQDSGLHAAFKSV
FPIVSYSGNAALEYVSYKLGKPAFDVKECQLRGVTYAAPLRVKVRLIIYDKDSPSKAIKD
IKEQEVYMGEIPLMTDNGTFIINGTERVVVSQLHRSPGVFFDHDKGKTHSSGKLLHSARV
IPYRGSWLDFEFDPKDQVFVRIDRRRKLPATILLRALELNNQQILDLFFDRVEYKVKDTA
IEMMIVGARLKGETAAFEIKDKKGNVLVEEGKRITARHIRDFEEVGLQSAAVPDSYLLGK
ALATDLVDSKSGEILANCNDEITLDVLETIRTQKIKSFETLYTNDLDCGPFISDTLRNDP
TSTPLEALVEVYRMMRPGEPPTKESAETLFQNLFFSTDRYDLSAVGRMKFNRRLGREDDE
GAGILSRDDIVEVVKTLIAIRNGNGQVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
RERLSMAESEGLMPQDLVNAKPVAAAIKEFFGSSQLSQFMDQNNPLSGITNKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLATYARTNSYGFLETPYRKVS
AGKVSDEIVYLSAIDEARHTIAQANVTVDEHGMIQGEFVQVRHQNEFTLAPLDKVDMMDV
SPRQIVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLKSDKPLVGTGIERNVAIDSGVC
IVADRGGIVEYVDASRIVVKVAGDEIGEDDAGVDIYNLTKYTRSNQNTCINQRTIVNQGD
PIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNYEDSILVSEKVVKEDRFTSIHIQE
LTCIARDTKLGPEEITADIPNVGEAALNKLDESGIVYIGAEVGAGDILVGKVTPKSETQL
TPEEKLLRAIFGEKASDVKDTSLRVKGGMRGTVIDVQVFTRDGVERDQRSRDIERQALEE
FRKDLNAEYRIVENTLFERLTAALVGQPVSGGPDLQKGDVLTAEYLAALPRADWFKLRMQ
DEAMAAQLESAESRLKERKVDQEARFDDKKRKLQSGDDLQPGVLKVVKVYLAVKRYIQPG
DKMAGRHGNKGVISVIMPVEDMPYDAKGNPVDIVLNPLGVPSRMNVGQILETHLGAAAKG
LGDQINEMMLEQRSAGDLRDFMDQIYNHSGTGHRTETLGEFSDAEIMELAGNLRGGVPIA
TPVFDGAKEEEVKGLLRLAGMDDSGQIQLWDGRTGDLFENKTTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
MYKSIVDGDHRMEPGMPESFNVLVKEIRSLGIDMELENEE
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcttacaccgaaaaaaagcgaatccgtaaggatttcggcaaacttgagcca
gtaatggatattccatatctgttggctatacagttagattcctatcgtagttttctgcag
gcagattttgatgcctcagaacgccaagatagcggtctacatgctgcgtttaaatcggta
tttccaattgtcagttattctggcaacgctgcacttgaatatgtcagctataagctgggc
aaacctgcttttgacgttaaagaatgtcaattgcgcggggttacctatgcggcgccattg
cgcgtgaaagtgcgtcttatcatctatgataaagactcaccgagcaaagcaattaaggac
attaaagagcaagaagtctatatgggcgagatcccattaatgaccgataatggtaccttt
attattaatggtaccgaacgagttgtggtgtcccagctacatcgttcgccgggtgtcttt
tttgaccatgataaaggtaagacgcacagctcaggcaagttattgcactcagctcgagtt
atcccttaccgtggttcttggctggactttgaatttgatccgaaggatcaggtttttgtt
cgcatcgatcggcgccgtaagttgcccgcgaccatcttgttgcgtgctcttgaattaaac
aatcagcaaattctagatttgttctttgaccgcgtggaatacaaggttaaagacactgca
atcgaaatgatgattgtgggtgctcgattgaaaggcgaaaccgccgcatttgaaatcaaa
gataagaaaggcaatgtgctggtcgaagaaggcaagcgtattaccgcccgtcatatccgc
gactttgaagaagttggcctgcagtctgcagcagtaccggattcttaccttttgggcaaa
gccctggctaccgacttggttgattccaaatcgggtgaaattttggccaattgcaatgat
gaaatcacgctcgatgtactcgagacgattcgcacccaaaagattaagagttttgagacg
ctgtacaccaacgatctcgattgtggaccttttatttccgacactctgcgtaatgaccct
accagtacgcctctagaggccctggttgaagtttaccgcatgatgcgtccaggtgagcca
ccaacgaaagaatcggctgagacactgtttcagaacctgttcttttcaacggatcgctat
gacctgtccgctgttggccggatgaagtttaaccgtcgcctcggtcgtgaagacgatgaa
ggtgctggtattctgagccgcgatgatattgtcgaggttgttaagaccctgatcgcgatt
cgtaatggtaatggtcaagtcgatgatatcgatcacttgggtaaccgacgggtacgttcg
gtcggtgagatggctgagaaccagttccgtgtgggcttggttcgagttgaacgcgccgtg
cgtgaacgtctgtctatggccgaaagtgaaggtttgatgccacaggatttggtcaacgcc
aagccggttgcagctgccatcaaagagtttttcggttcgtctcagctgtcccagtttatg
gatcaaaacaacccgttgtccggaattaccaataagcgacgtgtgtcggcattgggaccc
ggcggtttgacacgtgaacgtgctggttttgaagtacgtgacgtgcacccgacccactat
ggccgtgtttgcccaattgaaacaccggaaggtccaaacatcggtctgatcaacactctg
gcaacctatgcgcgtaccaacagctatggtttcctggaaacgccgtaccgtaaggtatct
gcgggtaaggttagtgatgagatcgtttatttgtcggctatcgacgaggctcgccatacc
atcgcgcaggctaacgttacggtcgatgagcatggcatgatccagggcgaattcgttcag
gtccgccatcagaacgagtttaccctggccccgttagacaaggtcgatatgatggacgtg
tcaccacgtcagatcgtatccattgcggcctcgttaattccgttcttggaacacgatgat
gctaaccgagccctgatgggttcgaacatgcaacgtcaagccgtgcccacgctaaagtca
gataagcctttggtgggtaccggtatcgaacgtaatgtggctatcgactccggcgtctgt
atcgtcgcggatcgtggcggcatcgtggaatatgtcgatgcatcgcgcatcgtggtcaag
gtcgcaggtgatgaaatcggtgaagatgatgccggtgtcgatatttacaacctgaccaaa
tatacccgttcaaaccagaacacctgtattaatcagcgcaccattgtcaatcagggtgat
ccgattgcacgcggtgatgtacttgccgacggcccatccgtcgacctgggtgaattggct
cttggccaaaacatgcgcatcgcctttatgccgtggaacggatacaactacgaagattcc
atcttggtctctgagaaggttgtcaaagaggatcgctttacatcgatccatatccaggaa
ttgacctgtattgcccgagacaccaagttagggcctgaggaaattaccgcggatatcccg
aacgttggcgaggccgctctgaacaagcttgacgagtccggcatcgtttacatcggtgct
gaagtcggcgcaggcgatattctagtcggcaaggtaacgcctaagagcgaaacccaactg
accccagaagagaagctgttacgtgcgatctttggtgagaaagcctctgatgtgaaagat
acctccctgcgtgttaagggtggtatgcgcggtaccgttatcgatgttcaggtctttacc
cgtgatggtgtagagcgtgatcaacgttcacgtgatattgagcgccaagcgttggaagag
ttccgcaaagatttgaacgcagaatatcgtattgttgaaaatacgctgtttgagcgtctg
accgctgcgttagtcggccagccggtatccggtggacccgatcttcaaaaaggtgacgtg
cttacagccgaatacctagccgctttgccgcgtgctgactggttcaaactgcgtatgcag
gatgaagccatggccgcacagctggagtcggctgagagccgcttaaaagagcgtaaggtc
gatcaagaagctcgcttcgacgacaagaaacgcaaactgcagtcgggtgacgatctgcag
ccaggcgttttgaaggtggtcaaggtgtatctggcggttaaacgctacatacagccgggc
gacaagatggctggacgtcatggtaacaagggtgttatctcggtgattatgccggtcgaa
gacatgccttatgatgccaaaggcaacccagtcgatatcgtgcttaacccgctcggtgtg
ccttcgcggatgaacgttggtcagattttggaaacgcacctaggtgccgccgccaagggt
ctgggtgaccaaatcaacgagatgatgctcgagcagcgcagcgcaggtgatttacgtgac
tttatggaccagatttataaccactctggtaccggtcaccgtactgaaaccctcggtgaa
ttttccgatgcggaaatcatggagctggcaggtaatctgcgcggtggtgtacctattgcc
accccggtctttgatggcgcgaaagaagaagaagttaagggtctgttgcgtttagctggc
atggatgacagcggtcagatccaattgtgggatggccgtactggcgacctattcgaaaac
aaaacgactgtcggttacatgtacatgctcaagttgaaccacttagtggacgacaagatg
catgctcgttcaactggctcatacagtctggtaacacaacaaccattgggcggtaaagcg
caatttggtggtcaacgatttggtgaaatggaagtgtgggccttagaagcttacggtgcc
gcttacaccttgcaggaaatgttgacagtgaagtcagatgacgtgaatggccgtacgaaa
atgtataagagcattgtcgatggtgatcaccgtatggaacctggtatgccggaatctttc
aacgtattggtgaaagagatccgctcgctgggtatcgatatggagctggaaaacgaagag
taa
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