Rhodoferax ferrireducens: Rfer_3592
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Entry
Rfer_3592 CDS
T00334
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rfer_3592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfr03021
]
Rfer_3592
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_3592
Enzymes [BR:
rfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rfer_3592
Transcription machinery [BR:
rfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rfer_3592
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rfer_3592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
UbiD
Motif
Other DBs
NCBI-ProteinID:
ABD71296
UniProt:
Q21SF7
LinkDB
All DBs
Position
complement(4001536..4005588)
Genome browser
AA seq
1350 aa
AA seq
DB search
MLEIPYLLQMQKDAYTAFLQADVHPKKRTAEGLQAAFEAAFPIISHNGFVEMKYLEYNLA
KPAFDVRECQTRGLTFASAVRAKVQLFIYDRESSTSQNKVIKEVKEQEVYMGEVPLMTTK
GSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDF
LYFRVDRRRKMPVTILLKAIGLNHESILANFFVNDNFRLMDSGAQMEFVAERLRGEVARF
DITDKSGKVIVAKEKRVTARHTRELEQSGTTHISVPEDFLLGRVVARNIVDTDTGEILAK
ANEELTEALIKKLRLAGVQDLPCIYTNELDQGAYISQTLRSDETVDEFAARVAIYRMMRP
GEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKMGRPESTGPMVLTNEDILAVVKIL
VDLRNGRGDVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHDL
INSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHV
THYGRVCPIETPEGPNIGLINSLALYARLNDYGFIETPYRRVVDGKVTMEIDYLSAIEEG
KFVIAQANAVLDKDGKLTGEMISAREAGETIFAGPERVQYMDVSPAQIVSVAASLVPFLE
HDDANRALMGANMSRQAVPILRPEKPMVGTGIERVAAIDSGTVVTATRGGMVDYVDATRV
VIRVNDDEAQAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKKGDMLAKGDVIADGASTDLG
ELALGQNMLIGFMTWNGYNFEDSILISERVVADDRYTSIHIEELVVMARDTKLGCEEITR
DIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASD
VKDTSLRVDQGSQGTVIDVQVFTREGIVRDRRAQQIIDDELKRFRLDLNDQLRLVEADSF
DRIEKLLVGKVANGGPQKLAKGTTIDKAYLTSVEKHHWFDIRPAEDDVAAQLESIKNSME
QTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRHLQPGDKMAGRHGNKGVVSKI
VPVEDMPFMADGTPCDIVLNPLGVPSRMNIGQVLEVHLGWAAKGIGQRIGDMLQAEAKVA
ELRKFLDELYNGTGRKEDLAQLSDDEVLEMAGNLTSGVPFATPVFDGASEADIGAMLKLA
YPEDAIRQKGLTPARTQAYLYDGRTGDPFERPTTIGYMHYLKLHHLVDDKMHARSTGPYS
LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRTKVYESIVKGE
HSIEAGMPESFNVLVKEIRSLGIDIELERG
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaattccttacctgttgcaaatgcaaaaggatgcctacaccgcgttcctgcag
gctgatgttcaccccaaaaagcgaacagcagaagggcttcaagccgcttttgaagcggct
ttcccgatcatttcacacaatggctttgtcgagatgaaatatctcgagtacaacctggcc
aagcccgctttcgacgtgcgtgagtgccagacccgtggtctgactttcgcctcggcagtg
cgcgccaaggttcagctgttcatttatgaccgtgaatcgtcgacctcgcaaaataaagtg
atcaaagaggtcaaagagcaagaggtctacatgggcgaagtgcccctgatgaccaccaag
ggctcatttattatcaacggcacggagcgcgtgatcgtctcccagttgcaccgttccccc
ggtgtgttctttgaacacgacaagggcaaaactcacagttcgggcaagttgctgttctcg
gcccgaatcattccatatcgcggttcctggctcgattttgaattcgaccccaaggacttt
ctgtacttccgtgtggatcgtcggcgcaaaatgccggtcacgattctgctcaaggccatt
ggtttgaaccatgagtccatcctggcgaacttcttcgtcaatgacaatttccgtctgatg
gacagtggtgcccaaatggagtttgtggcagagcgcctgcgcggtgaagtggcccgtttc
gatatcaccgacaagagtggcaaagtgattgttgccaaagagaagcgagtgacggcccgc
cacacccgcgaactggaacagtctggcaccacgcacatcagcgtgcccgaggatttcttg
ctgggtcgtgtggtggcgcgcaatatcgttgacaccgatacgggtgaaattctggccaag
gccaatgaggaactcacggaagcactgatcaagaagctacgtttggctggcgtgcaggat
ctgccgtgtatttacaccaatgaactcgatcagggtgcgtacatttcgcaaaccttgcgc
agtgacgaaacggtggacgaatttgcagcccgtgtggccatctaccgcatgatgcgcccg
ggtgagccgccgaccgaggacgcggtgcaggcgctgttccagcgcttgttctacaaccct
gacacctacgatctgtcgcgtgtcggccggatgaagttcaacgccaagatgggccgaccg
gaatcgactggccccatggttctgaccaacgaggatatcctggcagtcgtcaagattctg
gtggacttgcgcaatggtcgcggcgacgtggacgacattgaccaccttggcaaccggcgt
gtgcgttgcgtgggtgagctggccgaaaaccagtaccggaccggtctggcgcggattgaa
aaagcggtcaaggagcgtctgggtcaggccgagcaggagccactcatgccgcatgacctg
atcaacagcaagcccatttcggcggcactgaaagagttcttcggcgcttcgcagttgtcc
cagttcatggatcagaccaacccgttgtcggagatcacccacaagcgccgcgtatcggcc
cttggcccaggtggtttgacgcgcgagcgcgccggctttgaagtgcgtgacgtgcacgtg
acccattacggtcgcgtgtgcccgattgaaacgccagaaggtccgaacatcggcctgatc
aattcgctggcgctgtatgcccgcctcaacgattacggtttcattgaaacgccctatcgt
cgcgtggttgatggcaaggtcacgatggagattgactatttgtcggcgattgaagaaggt
aaattcgtcatcgcgcaggccaatgcggtactggataaggacggcaagctcacgggcgag
atgatctctgcgcgtgaagcaggtgaaacgatttttgccgggcccgagcgtgtgcaatac
atggacgtgtcgccagcacagatcgtgtcagtggctgcctccttggtgccgtttctggag
cacgatgatgcgaaccgcgccttgatgggtgcaaatatgtcgcgtcaggccgtgccgatt
ctgcgcccggaaaagccaatggttggcacaggcattgagcgcgttgcggcgattgactcc
ggcactgtcgtgactgcaacgcggggcggcatggtggattacgtggatgcaacccgggtt
gtgattcgcgtcaatgacgacgaggcacaagccggtgaagtgggtgttgatatttacaac
ctcatcaaataccagcgctccaatcaaaataccaatatccatcagcggcccattgtcaaa
aagggcgacatgctggccaagggagacgtcattgctgacggtgcttccaccgatctgggt
gaactggctttgggccagaacatgctcattggcttcatgacctggaacggctacaacttc
gaagattcaattttgatcagcgaacgcgtggtggcagacgatcgctatacctcgattcat
attgaggagttggtcgtgatggcgcgtgataccaaacttggttgtgaagaaatcacccgt
gacattccgaacttgagcgaacaacagcttaatcgtctggatgagtccggcatcatttac
gttggcgccgaagttcagccgggtgacacgctggtgggcaaagttacccccaagggcgag
accacactgacaccggaagagaagctgctgcgtgccatcttcggtgaaaaagccagtgac
gtgaaagacacgtcattgcgtgtggaccagggctcccaggggaccgtgatcgacgtgcag
gtctttacccgcgaaggcatcgtgcgcgaccgccgggcacaacaaatcattgatgacgaa
ctcaagcgtttccggcttgacttgaatgaccaactgcgtctcgtggaagccgattcattt
gaccggatcgagaagttactggttggcaaagtggccaatgggggtccgcaaaaacttgcc
aaaggcacgaccattgacaaggcgtatttgacttcggttgaaaaacaccactggtttgat
attcgtccggctgaagacgatgtcgcagctcaattggagagcatcaagaactcgatggag
cagacccggcacagcttcgatctcgcctttgaagaaaaacgcaagaagttgacccaaggc
gacgagttgcctgctggtgtcttgaagatggtcaaggtttatctggctgtcaaacgccat
ctgcaaccgggcgacaaaatggccggccgccacggcaacaagggcgtggtgtccaagatc
gtcccggttgaagacatgccgttcatggcggatggcacgccttgcgatattgtgctcaat
cccctgggtgtgccgtcacggatgaatatcggccaggtgctcgaagtccatctgggatgg
gctgcaaaaggtattggacagcgcattggtgacatgttgcaggctgaagccaaggtggcc
gaattgcgcaagttcctggacgagctctacaacggtaccggtcgcaaggaagacctggct
caactgagtgacgacgaagtgctggaaatggctggtaatctgacgtcgggtgtgccgttc
gccacgcccgtgtttgacggcgcatcggaggctgacatcggggccatgctcaagctcgct
taccctgaggatgcgatcaggcaaaaggggctcaccccggcgcgcacccaagcttacctg
tacgacggccgcaccggcgacccgtttgagcggcccacgacgattggttacatgcactat
ttgaagctgcaccatttggtggacgacaaaatgcatgcccgttccactggcccgtacagt
ctcgtcacgcagcaaccgttggggggcaaggctcagtttggtggtcagcgcttcggtgag
atggaggtctgggcgctcgaagcgtacggggctgcctacacgttgcaggaaatgctcaca
gtcaaatcagatgacgtgcagggccgtaccaaggtgtacgagagcattgtcaagggtgag
cattcgatcgaagccggcatgccggagtcgttcaatgtgctggtcaaggaaattcgctca
ctcggtattgatatcgagctggaacgcggctag
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