Roseobacter fucihabitans: ROLI_035480
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Entry
ROLI_035480 CDS
T10342
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rfu Roseobacter fucihabitans
Pathway
rfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ROLI_035480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfu03021
]
ROLI_035480 (rpoB)
03400 DNA repair and recombination proteins [BR:
rfu03400
]
ROLI_035480 (rpoB)
Enzymes [BR:
rfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ROLI_035480 (rpoB)
Transcription machinery [BR:
rfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ROLI_035480 (rpoB)
DNA repair and recombination proteins [BR:
rfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ROLI_035480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WVX50451
UniProt:
A0ABZ2BXA8
LinkDB
All DBs
Position
complement(3514933..3519069)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDADTPTDGDGIQGVFQSV
FPVKDFNETSVLEYVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYNTVTYKLEK
NKGWVAPFFPDRVRGTRPTYDLVDAKTGEILFEQGKKVTPRAVKKLIDEGKVTELLLPYE
HIVGKFVAKDIINEETGAIYVEAGDEMTLEYDKDGTLIGGTAKELVEAGITEIPLLDIDN
VNVGPYMRNTMAQDKNMNRDTALMDIYRVMRPGEPPTVEAASNLFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTQRTLRREDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRKVENRKVTDEVQYMSATEEMRHTVAQANANLDSDMKFVNDLVSTRKSG
DYTLSPSENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLV
GTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATADLELGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGDTVQKGQVVADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDEMAILDRNIYARLKSMIMGKVAVKGPKGVASNSEINEDL
LEMLTRGQWWQLALKDEADAQVVEALNEQYEIQKRTLDARFEDKVEKVRRGDDLPPGVMK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGINVDEALQDYRRSGDLTPVREAMSHAYGQDVYDEGIAGMDEET
LVEAAGNVTRGVPIATPVFDGAKEADVNDSLKRAGFDTSGQSVLFDGRTGEQFARPVTVG
VKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttccttggccagaaacgtctacgtaaatattatggcaaaatccgtgaa
gttttggagatgccaaacctaattgaggtacagaaatcctcatatgatcttttcctgaat
tccggtgatgcggatacgccgactgatggcgacggcatccagggggttttccagtccgtt
ttcccggtgaaggatttcaacgaaacctccgtgctggaatacgtcaagtacgagctggaa
aagcccaaatacgatgttgaggaatgtcagcagcgcgacatgacctattcggcaccgctc
aaagtgaccctgcgcctcatcgtgttcgatgtggacgaagacactggcgcgaaatccgtc
aaggacatcaaggaacaagacgtcttcatgggtgacatgccgctaatgaccccgaacggg
acatttgtggtgaacggcaccgagcgcgtgatcgtatcccagatgcaccgctcccccggc
gttttctttgatcacgacaagggcaagactcattcctcgggtaaactcctgtttgcctgc
cgcatcatcccctatcgcggcagctggctcgactttgaattcgacgccaaagacatcgtc
tttgcccggatcgaccgtcgtcggaaattgcccgtcacgacgctcctctacgcgcttggt
cttgaccaggaagcgatcatggacgcctattacaacaccgtcacctacaagctggaaaag
aacaaaggctgggtcgccccgttcttcccggaccgggtgcgcggcacccgtccgacctac
gatctggtcgatgcgaaaaccggtgaaatcctgtttgagcagggcaagaaagtcacgcca
cgcgcggttaagaaattgatcgacgagggcaaagtaaccgaattgctgctgccctatgag
catatcgtgggcaaattcgtcgccaaggacatcatcaacgaagaaactggtgcgatctat
gtcgaagccggtgatgagatgacgctggaatacgacaaagacggcacgctcattggcgga
acggccaaagagttggtcgaggctggtatcaccgagattccattgctggacatcgataac
gtcaacgtcggcccctacatgcgcaacaccatggcgcaggataagaacatgaaccgcgac
accgcgctcatggacatctaccgcgtcatgcgtccgggcgagccgcccaccgtcgaggcc
gcgtcgaacctgtttgacacgctgttctttgacagtgagcgctatgatctctcggctgtg
ggccgcgtgaaaatgaacatgcgtctggctctggatgccgaagacacgcagcgtacgttg
cgccgtgaggacattgtggcctgcatcaaggcgctggtcgatctgcgcgacggacgcggt
gacatcgacgacatcgaccacctcgggaaccgccgcgtgcgctccgttggcgagctgatg
gaaaaccaataccgcgttggcctgctgcgcatggagcgtgcgatcaaagagcgtatgtca
tctgtcgagatcgacacggtgatgccacaggacctgatcaacgcgaaacctgccgctgct
gcggtacgtgaattctttggttcttcgcagctcagccagttcatggaccaaaccaacccg
ctctccgaggtcacgcataagcgtcgcctttccgcgcttgggccgggcggtttgacacgt
gaacgtgcgggctttgaagtgcgcgacgtacaccccacgcactacggtcggatgtgcccg
attgaaacgccggaagggccgaacatcggtctgatcaactcgctggccacttttgcccgc
gtgaataaatacggcttcatcgagacaccctaccgcaaggtcgaaaaccgcaaggtgacc
gacgaagtgcaatacatgtccgcgaccgaggaaatgcgtcacaccgtggcgcaggccaac
gcgaacctcgacagtgacatgaagttcgtgaacgatctggtttccacgcggaaatcggga
gattatacgctgtcgccatccgagaatgtggacctgattgacgtcagcccgaaacagctg
gtgtcggtcgcggcctcgttgatcccattcctggaaaatgacgatgcgaacagggctctg
atgggctcgaacatgcagcgtcaggcggttcctttgcttcaggccgaggccccgcttgtg
ggcaccggcatcgaagaggtcgtggcgcgcgattccggtgcggcgatcatggcgaaacgc
gcgggcatcatcgaccaggtcgacgcccagcggatcgttattcgcgcgaccgctgatttg
gaactgggcgatgcgggtgtggacatttaccgcatgcgtaaattccagcgctccaaccag
aacacctgcatcaaccagcgtccgttggttaaggtgggtgacacggttcaaaaaggacag
gtggttgccgatggtccatcgacggatatgggagaactggcgctcggcaagaacgtcgtc
gtcgcctttatgccgtggaatggatacaactatgaggattccatcctgatctccgagcgg
attgcccgtgatgacgtcttcacctcgatccatatcgaggaattcgaagtcgccgcgcgt
gacacgaagctggggccagaagagatcacccgggatatcccgaatgtcggtgaggaagcc
ctgcgcaacctcgacgaagcgggcatcgtttacatcggtgccgatgtggaaccgggcgat
attctggtcggtaagatcacgccaaaaggtgagagcccgatgacgccggaagaaaagctc
ctccgggccatcttcggtgaaaaagcgtcggatgtgcgtgacacctcgttgcgcgtgaag
ccgggtgatttcggcacggtcgtcgaagtgcgcgtctttaaccgccatggtgtggaaaaa
gacgaacgtgccttgcagatcgagcgtgaagaagtcgagcgtttggcacgtgaccgtgac
gatgaaatggctattttggatcgcaacatctatgcgcgcctgaagtccatgatcatgggt
aaggttgcggtaaagggtccgaaaggcgttgcgtctaattcggagattaacgaggatctg
ctggaaatgctgacccgtggtcagtggtggcaattggcgctcaaagacgaagctgacgcg
caggtcgtagaggcgctgaatgagcaatacgagatccagaaacggaccttggatgcgcgt
tttgaggataaggtcgagaaagtccgtcgtggcgacgatctgcccccaggcgtgatgaag
atggtcaaggtttttgtcgcggtaaagcgcaagctgcaaccgggcgataaaatggccgga
cgtcacggcaacaaaggggtcatttccaaggtggttcccatggaagatatgccgttcctt
gcggacggtacgccggttgatttctgtctgaacccgctgggtgtgccgtcgcgtatgaac
gtcggtcagattctcgagacgcacatgggctgggccgcacgcggtttgggcatcaatgtg
gatgaggccttgcaggactatcgtcgctctggcgatctgacgcctgtgcgcgaagccatg
agccatgcatacggccaagacgtttacgacgaaggcatcgccggtatggatgaggaaacc
ctcgttgaggcggcaggtaacgtcacacgtggcgtgccgatcgcaacgccggtttttgac
ggtgccaaggaggcggatgtgaacgactcgttgaaacgtgcgggctttgacacatccggt
caatcggtactgtttgacggtcgtacaggcgagcagtttgcgcgtcccgtgactgttggc
gtcaaatacttgctgaaactgcaccaccttgtggatgataaaatccacgcgcgttcgacc
gggccatactcgttggtcacccagcagcctttgggtggtaaagcgcagtttggtggtcag
cgtttcggggaaatggaggtctgggcgctggaagcttatggcgctgcatataccctgcag
gaaatgctgaccgtgaaatcggatgacgtggccgggcggacgaaagtctatgaaagcatc
gtcaaaggcgaggacaattttgaagcgggcgtgcccgaaagcttcaacgttctggtcaaa
gaagtccgcggtctcggcctcaatatggaactcctggacgcggaggaggacgaataa
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integrated database retrieval system
